Wall clock time and date at job start Wed Apr 1 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21512 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.48161 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.39390 * 120.66629 * 359.97438 * 7 5 4 9 9 C 1.38865 * 118.61488 * 180.02562 * 8 7 5 10 10 O 1.35684 * 119.69744 * 180.18150 * 9 8 7 11 11 N 1.31837 * 120.60230 * 0.15494 * 9 8 7 12 12 C 1.32728 * 122.69416 * 359.92608 * 11 9 8 13 13 C 1.37461 * 120.23867 * 359.55186 * 12 11 9 14 14 C 1.50487 * 122.88453 * 180.44441 * 13 12 11 15 15 C 1.52763 * 110.63282 * 342.73998 * 14 13 12 16 16 C 1.53322 * 108.34370 * 50.64691 * 15 14 13 17 17 C 1.50760 * 117.45716 * 179.59073 * 12 11 9 18 18 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 19 19 C 1.53953 * 113.74647 * 158.73801 * 18 2 1 20 20 N 1.47803 * 86.03866 * 222.08719 * 19 18 2 21 21 C 1.36940 * 134.45480 * 204.64597 * 20 19 18 22 22 H 1.08004 * 120.00062 * 179.86839 * 21 20 19 23 23 C 1.38806 * 119.99897 * 359.86583 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 59.99985 * 25 23 21 27 27 H 1.48495 * 109.46849 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99870 * 25 23 21 29 29 C 1.47580 * 91.05616 * 24.54814 * 20 19 18 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 1.08004 * 120.69052 * 359.97438 * 8 7 5 35 35 H 0.96703 * 114.00184 * 89.99472 * 10 9 8 36 36 H 1.08995 * 109.39474 * 222.32805 * 14 13 12 37 37 H 1.09004 * 109.02296 * 102.90947 * 14 13 12 38 38 H 1.09010 * 109.68749 * 290.93749 * 15 14 13 39 39 H 1.09003 * 109.69002 * 170.36388 * 15 14 13 40 40 H 1.08997 * 109.64152 * 170.54247 * 16 15 14 41 41 H 1.09003 * 109.64193 * 49.91151 * 16 15 14 42 42 H 1.09006 * 109.24968 * 282.43036 * 17 12 11 43 43 H 1.08994 * 109.25393 * 41.89556 * 17 12 11 44 44 H 1.08997 * 112.94423 * 290.33469 * 18 2 1 45 45 H 1.08999 * 113.76379 * 336.35463 * 19 18 2 46 46 H 1.09004 * 113.76409 * 107.74717 * 19 18 2 47 47 H 0.96996 * 120.00162 * 180.02562 * 24 23 21 48 48 H 1.08999 * 113.77170 * 221.15419 * 29 20 19 49 49 H 1.09002 * 113.86789 * 89.76287 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1609 2.4116 7 6 2.6414 -0.7164 3.5668 8 6 2.9770 -2.0685 3.5199 9 6 3.4355 -2.6805 4.6790 10 8 3.7719 -3.9948 4.6573 11 7 3.5475 -1.9961 5.8002 12 6 3.2373 -0.7085 5.8881 13 6 2.7863 -0.0280 4.7822 14 6 2.4272 1.4331 4.8122 15 6 2.2221 1.9077 6.2496 16 6 3.4370 1.4749 7.0787 17 6 3.4014 -0.0441 7.2314 18 6 2.0400 -0.7212 -1.2491 19 6 3.4849 -0.3520 -1.6316 20 7 2.9979 -0.3177 -3.0267 21 6 3.5876 -0.4758 -4.2525 22 1 2.9929 -0.4038 -5.1512 23 6 4.9497 -0.7284 -4.3400 24 7 5.6744 -0.8166 -3.2449 25 14 5.7542 -0.9434 -6.0123 26 1 5.5662 0.2920 -6.8145 27 1 7.2057 -1.2010 -5.8337 28 1 5.1303 -2.0915 -6.7178 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.8816 -2.6287 2.6014 35 1 4.6989 -4.1600 4.4368 36 1 1.5091 1.5919 4.2467 37 1 3.2342 2.0067 4.3559 38 1 1.3182 1.4570 6.6597 39 1 2.1326 2.9939 6.2686 40 1 3.3951 1.9431 8.0621 41 1 4.3534 1.7703 6.5677 42 1 2.5656 -0.3212 7.8740 43 1 4.3324 -0.3808 7.6876 44 1 1.8529 -1.7948 -1.2261 45 1 3.8047 0.6191 -1.2539 46 1 4.2071 -1.1448 -1.4365 47 1 6.6262 -0.9927 -3.3061 48 1 0.8587 -0.5970 -3.1199 49 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970997265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:36 Heat of formation + Delta-G solvation = 5.403894 kcal Electronic energy + Delta-G solvation = -30412.419575 eV Core-core repulsion = 26341.118604 eV Total energy + Delta-G solvation = -4071.300971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.35892 -39.64763 -38.32177 -37.93133 -35.88770 -34.95342 -33.59616 -32.24835 -30.85324 -29.93364 -29.57367 -27.56169 -25.47186 -24.69017 -24.00769 -23.58133 -23.34049 -21.43904 -20.80962 -19.97798 -19.30371 -18.56042 -17.43776 -17.04148 -16.71812 -16.12793 -15.92632 -15.50006 -15.15913 -14.91044 -14.58835 -14.42004 -14.06195 -14.00524 -13.88959 -13.61959 -13.50689 -13.07230 -13.03102 -12.61695 -12.42637 -12.17301 -12.06017 -11.81391 -11.71938 -11.38982 -11.33504 -11.12656 -11.08392 -10.92841 -10.89897 -10.75593 -10.42614 -10.22481 -9.98912 -9.93540 -9.80833 -9.47874 -9.28672 -8.95678 -8.82169 -8.79781 -6.90662 -5.79241 -3.11585 0.46493 0.71866 2.71596 3.03544 3.24770 3.37689 3.41862 3.43007 3.54182 4.11990 4.35818 4.42789 4.50524 4.59396 4.68904 4.70973 4.86415 5.02627 5.13314 5.20901 5.21719 5.25150 5.30103 5.34520 5.44858 5.49705 5.54715 5.59680 5.67406 5.70702 5.72689 5.82116 5.88681 5.92444 5.97843 6.09896 6.13889 6.17554 6.28520 6.33584 6.38519 6.52829 6.60337 6.72487 7.19036 7.21689 7.31773 7.49212 7.52208 7.63450 7.95369 8.14989 9.02022 9.68472 10.57174 11.37738 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.002524 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.544548 B =11091.562844 C =11767.560747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.091 0.909 4 N -0.707 5.707 5 C 0.558 3.442 6 O -0.525 6.525 7 C -0.075 4.075 8 C -0.154 4.154 9 C 0.308 3.692 10 O -0.480 6.480 11 N -0.494 5.494 12 C 0.150 3.850 13 C -0.077 4.077 14 C -0.083 4.083 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.066 4.066 18 C -0.148 4.148 19 C 0.171 3.829 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.399 0.601 34 H 0.147 0.853 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.026 0.974 46 H 0.071 0.929 47 H 0.254 0.746 48 H 0.045 0.955 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 0.130 21.023 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.357 5.357 5 C 0.344 3.656 6 O -0.402 6.402 7 C -0.086 4.086 8 C -0.176 4.176 9 C 0.127 3.873 10 O -0.287 6.287 11 N -0.213 5.213 12 C 0.015 3.985 13 C -0.080 4.080 14 C -0.120 4.120 15 C -0.162 4.162 16 C -0.160 4.160 17 C -0.104 4.104 18 C -0.168 4.168 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.351 4.351 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.004 3.996 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.164 0.836 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.044 0.956 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.192 0.340 21.618 22.786 hybrid contribution 0.961 -0.403 -1.904 2.171 sum -6.230 -0.063 19.714 20.676 Atomic orbital electron populations 1.22137 0.95438 1.01887 1.02235 1.21172 0.93612 0.97651 0.82945 0.89143 1.46051 1.66039 1.14187 1.09451 1.18035 0.78193 0.86519 0.82883 1.90718 1.50317 1.15068 1.84137 1.20336 1.00047 0.93411 0.94786 1.22313 1.01496 0.94205 0.99559 1.18779 0.96309 0.84446 0.87719 1.84798 1.33341 1.18146 1.92439 1.66822 1.16814 1.08644 1.29036 1.20759 0.94594 0.87694 0.95499 1.20627 0.97391 0.98235 0.91748 1.20774 1.04766 0.89389 0.97073 1.21682 0.98054 1.01302 0.95193 1.21618 0.99306 0.94179 1.00859 1.20394 1.03691 0.94674 0.91618 1.23846 1.01019 0.99700 0.92229 1.22296 0.91287 0.98500 0.83371 1.45981 1.03268 1.82601 1.01991 1.18981 0.91447 1.41749 0.82953 0.90306 1.24779 0.96041 1.02334 0.97285 1.69800 1.06135 1.55124 1.25836 0.86205 0.78423 0.78008 0.83152 1.21183 1.21559 1.21072 1.22482 0.89696 0.96628 0.90756 0.92669 0.91214 0.92705 0.76543 0.83554 0.74003 0.87280 0.89724 0.91690 0.90903 0.90777 0.91256 0.89642 0.89529 0.89362 0.95624 0.91058 0.93627 0.93712 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.31 37.16 0.35 -1.65 16 2 C 0.15 2.19 2.38 -67.94 -0.16 2.03 16 3 H 0.09 1.51 7.41 -51.93 -0.39 1.13 16 4 N -0.71 -9.22 5.03 -54.66 -0.28 -9.50 16 5 C 0.56 7.74 7.71 -12.18 -0.09 7.65 16 6 O -0.52 -8.37 12.87 5.35 0.07 -8.30 16 7 C -0.07 -0.93 5.91 -104.56 -0.62 -1.55 16 8 C -0.15 -1.72 9.55 -38.92 -0.37 -2.09 16 9 C 0.31 3.61 7.75 -17.32 -0.13 3.47 16 10 O -0.48 -4.82 13.56 -18.75 -0.25 -5.08 16 11 N -0.49 -6.15 10.18 -9.62 -0.10 -6.25 16 12 C 0.15 1.70 6.62 -82.46 -0.55 1.16 16 13 C -0.08 -0.92 5.77 -104.18 -0.60 -1.52 16 14 C -0.08 -0.90 4.29 -28.11 -0.12 -1.03 16 15 C -0.12 -1.01 5.99 -26.69 -0.16 -1.17 16 16 C -0.12 -0.87 5.97 -26.71 -0.16 -1.03 16 17 C -0.07 -0.55 5.91 -28.00 -0.17 -0.72 16 18 C -0.15 -2.54 3.47 -89.69 -0.31 -2.85 16 19 C 0.17 3.88 7.08 -2.84 -0.02 3.86 16 20 N -0.61 -15.44 3.70 -177.68 -0.66 -16.10 16 21 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 22 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.08 11.39 55.49 0.63 -26.45 16 25 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.13 2.55 7.64 -2.96 -0.02 2.53 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 4.46 6.72 -40.82 -0.27 4.19 16 34 H 0.15 1.33 6.51 -52.48 -0.34 0.99 16 35 H 0.40 2.15 9.06 45.56 0.41 2.56 16 36 H 0.11 1.36 5.91 -51.93 -0.31 1.06 16 37 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.06 0.51 8.10 -51.92 -0.42 0.09 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.03 0.62 7.99 -51.93 -0.41 0.20 16 46 H 0.07 1.79 7.16 -51.93 -0.37 1.41 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -33.91 391.12 -9.79 -43.70 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.68 Total: 4.70 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -3.40 Total: 0.38 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.40 Total: -58.29 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.19 Total: -13.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.91 -9.79 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970997265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.105 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds