Wall clock time and date at job start Wed Apr 1 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.34777 * 120.00376 * 275.00479 * 4 2 1 6 6 O 1.21512 * 119.99817 * 359.97438 * 5 4 2 7 7 C 1.48161 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.39390 * 120.66629 * 359.97438 * 7 5 4 9 9 C 1.38865 * 118.61488 * 180.02562 * 8 7 5 10 10 O 1.35684 * 119.69744 * 180.18150 * 9 8 7 11 11 N 1.31837 * 120.60230 * 0.15494 * 9 8 7 12 12 C 1.32728 * 122.69416 * 359.92608 * 11 9 8 13 13 C 1.37461 * 120.23867 * 359.55186 * 12 11 9 14 14 C 1.50487 * 122.88453 * 180.44441 * 13 12 11 15 15 C 1.52763 * 110.63282 * 342.73998 * 14 13 12 16 16 C 1.53322 * 108.34370 * 50.64691 * 15 14 13 17 17 C 1.50760 * 117.45716 * 179.59073 * 12 11 9 18 18 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 19 19 C 1.53953 * 113.74647 * 158.73801 * 18 2 1 20 20 N 1.47803 * 86.03866 * 222.08719 * 19 18 2 21 21 C 1.36940 * 134.45480 * 204.64597 * 20 19 18 22 22 H 1.08004 * 120.00062 * 179.86839 * 21 20 19 23 23 C 1.38806 * 119.99897 * 359.86583 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 59.99985 * 25 23 21 27 27 H 1.48495 * 109.46849 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99870 * 25 23 21 29 29 C 1.47580 * 91.05616 * 24.54814 * 20 19 18 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 34 34 H 1.08004 * 120.69052 * 359.97438 * 8 7 5 35 35 H 0.96703 * 114.00184 * 89.99472 * 10 9 8 36 36 H 1.08995 * 109.39474 * 222.32805 * 14 13 12 37 37 H 1.09004 * 109.02296 * 102.90947 * 14 13 12 38 38 H 1.09010 * 109.68749 * 290.93749 * 15 14 13 39 39 H 1.09003 * 109.69002 * 170.36388 * 15 14 13 40 40 H 1.08997 * 109.64152 * 170.54247 * 16 15 14 41 41 H 1.09003 * 109.64193 * 49.91151 * 16 15 14 42 42 H 1.09006 * 109.24968 * 282.43036 * 17 12 11 43 43 H 1.08994 * 109.25393 * 41.89556 * 17 12 11 44 44 H 1.08997 * 112.94423 * 290.33469 * 18 2 1 45 45 H 1.08999 * 113.76379 * 336.35463 * 19 18 2 46 46 H 1.09004 * 113.76409 * 107.74717 * 19 18 2 47 47 H 0.96996 * 120.00162 * 180.02562 * 24 23 21 48 48 H 1.08999 * 113.77170 * 221.15419 * 29 20 19 49 49 H 1.09002 * 113.86789 * 89.76287 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1609 2.4116 7 6 2.6414 -0.7164 3.5668 8 6 2.9770 -2.0685 3.5199 9 6 3.4355 -2.6805 4.6790 10 8 3.7719 -3.9948 4.6573 11 7 3.5475 -1.9961 5.8002 12 6 3.2373 -0.7085 5.8881 13 6 2.7863 -0.0280 4.7822 14 6 2.4272 1.4331 4.8122 15 6 2.2221 1.9077 6.2496 16 6 3.4370 1.4749 7.0787 17 6 3.4014 -0.0441 7.2314 18 6 2.0400 -0.7212 -1.2491 19 6 3.4849 -0.3520 -1.6316 20 7 2.9979 -0.3177 -3.0267 21 6 3.5876 -0.4758 -4.2525 22 1 2.9929 -0.4038 -5.1512 23 6 4.9497 -0.7284 -4.3400 24 7 5.6744 -0.8166 -3.2449 25 14 5.7542 -0.9434 -6.0123 26 1 5.5662 0.2920 -6.8145 27 1 7.2057 -1.2010 -5.8337 28 1 5.1303 -2.0915 -6.7178 29 6 1.6214 -0.0472 -2.5684 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 2.8816 -2.6287 2.6014 35 1 4.6989 -4.1600 4.4368 36 1 1.5091 1.5919 4.2467 37 1 3.2342 2.0067 4.3559 38 1 1.3182 1.4570 6.6597 39 1 2.1326 2.9939 6.2686 40 1 3.3951 1.9431 8.0621 41 1 4.3534 1.7703 6.5677 42 1 2.5656 -0.3212 7.8740 43 1 4.3324 -0.3808 7.6876 44 1 1.8529 -1.7948 -1.2261 45 1 3.8047 0.6191 -1.2539 46 1 4.2071 -1.1448 -1.4365 47 1 6.6262 -0.9927 -3.3061 48 1 0.8587 -0.5970 -3.1199 49 1 1.3910 1.0132 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970997265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:35 Heat of formation + Delta-G solvation = -19.552241 kcal Electronic energy + Delta-G solvation = -30413.501754 eV Core-core repulsion = 26341.118604 eV Total energy + Delta-G solvation = -4072.383150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27362 -40.81817 -39.67120 -38.87866 -36.68688 -36.23638 -34.57336 -34.12436 -32.01774 -30.78025 -30.45901 -29.35331 -26.80239 -26.06229 -25.48881 -24.41309 -24.28496 -22.82218 -21.84980 -20.99853 -20.53216 -19.55286 -18.78752 -18.33098 -18.01098 -17.09651 -16.94259 -16.90576 -16.40104 -16.21403 -15.75761 -15.56928 -15.21516 -15.12467 -14.80233 -14.70866 -14.59966 -14.38768 -14.06837 -13.80369 -13.42188 -13.34037 -13.25415 -13.08940 -12.89382 -12.84036 -12.67867 -12.57540 -12.57454 -12.05131 -11.87865 -11.76535 -11.74401 -11.57049 -11.49135 -11.26124 -11.16082 -10.89934 -10.86663 -10.26083 -10.10095 -9.68225 -8.92506 -7.91169 -5.24540 -0.48054 -0.14169 1.44574 1.47810 1.53822 1.70831 1.95546 2.39929 2.46768 2.64752 3.28125 3.30896 3.35627 3.47532 3.66242 3.72376 3.77857 3.90737 4.01256 4.04908 4.14648 4.28366 4.36260 4.43099 4.46846 4.49080 4.58567 4.63564 4.73775 4.75192 4.77313 4.81832 4.85479 4.99997 5.02055 5.03467 5.08678 5.15839 5.24164 5.25693 5.33223 5.35690 5.43199 5.45166 5.52583 5.56058 5.64981 5.93161 6.41687 6.54358 6.79569 6.91190 7.07125 7.60504 8.55977 9.25342 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.002524 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.544548 B =11091.562844 C =11767.560747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.067 0.933 4 N -0.702 5.702 5 C 0.557 3.443 6 O -0.549 6.549 7 C -0.088 4.088 8 C -0.153 4.153 9 C 0.304 3.696 10 O -0.486 6.486 11 N -0.510 5.510 12 C 0.147 3.853 13 C -0.089 4.089 14 C -0.079 4.079 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.065 4.065 18 C -0.110 4.110 19 C 0.167 3.833 20 N -0.645 5.645 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.068 4.068 24 N -0.954 5.954 25 Si 0.978 3.022 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.274 1.274 29 C 0.131 3.869 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.410 0.590 34 H 0.165 0.835 35 H 0.421 0.579 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.004 0.996 46 H 0.042 0.958 47 H 0.247 0.753 48 H 0.065 0.935 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -0.474 21.788 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.056 3.944 3 H 0.085 0.915 4 N -0.353 5.353 5 C 0.344 3.656 6 O -0.429 6.429 7 C -0.098 4.098 8 C -0.174 4.174 9 C 0.124 3.876 10 O -0.296 6.296 11 N -0.230 5.230 12 C 0.011 3.989 13 C -0.092 4.092 14 C -0.116 4.116 15 C -0.158 4.158 16 C -0.154 4.154 17 C -0.103 4.103 18 C -0.130 4.130 19 C 0.042 3.958 20 N -0.371 5.371 21 C -0.364 4.364 22 H 0.102 0.898 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.806 3.194 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.006 3.994 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.247 0.753 34 H 0.182 0.818 35 H 0.283 0.717 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.022 0.978 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.083 0.917 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.434 -0.282 22.381 23.919 hybrid contribution 1.331 -0.218 -2.127 2.518 sum -7.103 -0.500 20.255 21.470 Atomic orbital electron populations 1.22060 0.93075 1.03151 1.02541 1.20912 0.95200 0.96012 0.82306 0.91497 1.45938 1.65909 1.14629 1.08830 1.18249 0.77717 0.86259 0.83335 1.90712 1.51377 1.16162 1.84606 1.20306 1.01041 0.94076 0.94408 1.22446 1.00965 0.93748 1.00269 1.18935 0.96088 0.84904 0.87715 1.84751 1.35188 1.17180 1.92467 1.66912 1.17398 1.09193 1.29478 1.21229 0.93668 0.87471 0.96490 1.20819 0.97750 0.98714 0.91903 1.20680 1.03196 0.88913 0.98806 1.21674 0.98819 1.01988 0.93316 1.21610 0.98416 0.93442 1.01891 1.20515 1.04478 0.95185 0.90119 1.23457 0.96294 1.00578 0.92663 1.22183 0.93967 0.96489 0.83155 1.46418 1.05910 1.82867 1.01934 1.19409 0.91947 1.40593 0.84449 0.89794 1.25627 0.96783 1.02965 1.00751 1.69997 1.05818 1.56663 1.27775 0.85163 0.76896 0.78231 0.79114 1.20583 1.22137 1.19927 1.22680 0.87626 0.97614 0.91507 0.90889 0.90465 0.92881 0.75319 0.81804 0.71746 0.89125 0.91148 0.91130 0.89786 0.88227 0.91854 0.88419 0.88856 0.87733 0.97826 0.93991 0.94364 0.91709 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.31 71.98 0.67 -2.77 16 2 C 0.16 4.55 2.38 44.99 0.11 4.65 16 3 H 0.07 2.26 7.41 -2.39 -0.02 2.24 16 4 N -0.70 -17.90 5.03 -445.13 -2.24 -20.14 16 5 C 0.56 15.56 7.71 86.88 0.67 16.23 16 6 O -0.55 -17.94 12.87 -3.75 -0.05 -17.99 16 7 C -0.09 -2.18 5.91 -19.83 -0.12 -2.29 16 8 C -0.15 -3.29 9.55 22.70 0.22 -3.08 16 9 C 0.30 6.84 7.75 84.84 0.66 7.49 16 10 O -0.49 -9.11 13.56 -90.02 -1.22 -10.33 16 11 N -0.51 -12.24 10.18 -297.41 -3.03 -15.26 16 12 C 0.15 3.22 6.62 42.26 0.28 3.50 16 13 C -0.09 -2.11 5.77 -19.58 -0.11 -2.22 16 14 C -0.08 -1.74 4.29 29.70 0.13 -1.61 16 15 C -0.12 -1.81 5.99 30.62 0.18 -1.62 16 16 C -0.12 -1.44 5.97 30.61 0.18 -1.26 16 17 C -0.07 -0.98 5.91 29.77 0.18 -0.80 16 18 C -0.11 -3.67 3.47 -10.13 -0.04 -3.71 16 19 C 0.17 7.79 7.08 86.45 0.61 8.41 16 20 N -0.64 -32.64 3.70 -716.07 -2.65 -35.29 16 21 C -0.24 -13.18 10.70 84.03 0.90 -12.28 16 22 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.95 -57.54 11.39 21.65 0.25 -57.29 16 25 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.13 4.92 7.64 86.49 0.66 5.58 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.67 7.52 -2.39 -0.02 1.65 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.41 8.68 6.72 -92.70 -0.62 8.05 16 34 H 0.16 2.78 6.51 -2.91 -0.02 2.76 16 35 H 0.42 3.92 9.06 -74.06 -0.67 3.25 16 36 H 0.09 2.34 5.91 -2.39 -0.01 2.33 16 37 H 0.07 1.72 8.11 -2.38 -0.02 1.70 16 38 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 42 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 46 H 0.04 2.18 7.16 -2.38 -0.02 2.16 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 Total: -1.00 -74.54 391.12 -1.57 -76.12 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.30 Total: 21.74 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.64 Total: 10.78 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -7.67 Total: -127.98 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.27 Total: -28.32 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.54 -1.57 -76.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970997265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.565 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds