Wall clock time and date at job start Wed Apr 1 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.50698 * 109.47467 * 119.99692 * 2 1 3 5 5 O 1.21281 * 119.99828 * 84.06003 * 4 2 1 6 6 N 1.34772 * 120.00416 * 264.06432 * 4 2 1 7 7 C 1.47485 * 125.66769 * 184.37530 * 6 4 2 8 8 C 1.55280 * 104.77817 * 155.88369 * 7 6 4 9 9 C 1.54492 * 101.42498 * 36.68942 * 8 7 6 10 10 C 1.47184 * 125.66252 * 4.67851 * 6 4 2 11 11 C 1.52518 * 110.09856 * 206.77811 * 9 8 7 12 12 N 1.47307 * 108.39614 * 186.95946 * 11 9 8 13 13 C 1.36937 * 121.06991 * 229.37686 * 12 11 9 14 14 H 1.07992 * 120.00488 * 152.07865 * 13 12 11 15 15 C 1.38809 * 119.99701 * 332.07911 * 13 12 11 16 16 N 1.31614 * 120.00416 * 348.78953 * 15 13 12 17 17 Si 1.86807 * 119.99978 * 168.78408 * 15 13 12 18 18 H 1.48496 * 109.46722 * 60.00201 * 17 15 13 19 19 H 1.48499 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47155 * 300.00280 * 17 15 13 21 21 C 1.47165 * 117.86715 * 49.40471 * 12 11 9 22 22 C 1.53276 * 108.54787 * 308.86473 * 21 12 11 23 23 O 1.42070 * 110.38317 * 83.74444 * 9 8 7 24 24 C 1.50697 * 109.47398 * 240.00101 * 2 1 3 25 25 C 1.38669 * 120.42207 * 120.25221 * 24 2 1 26 26 C 1.38629 * 118.41928 * 180.24810 * 25 24 2 27 27 C 1.38226 * 119.16331 * 359.74107 * 26 25 24 28 28 N 1.31851 * 120.76325 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72430 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47138 * 58.78915 * 1 2 3 31 31 H 1.09000 * 109.46612 * 178.79168 * 1 2 3 32 32 H 1.08997 * 109.46765 * 298.78778 * 1 2 3 33 33 H 1.08998 * 110.35405 * 274.84472 * 7 6 4 34 34 H 1.08998 * 110.35270 * 37.13242 * 7 6 4 35 35 H 1.09004 * 111.22558 * 278.59590 * 8 7 6 36 36 H 1.08999 * 110.93140 * 154.66040 * 8 7 6 37 37 H 1.09001 * 109.90822 * 300.88181 * 10 6 4 38 38 H 1.09001 * 109.90739 * 61.96065 * 10 6 4 39 39 H 1.08992 * 109.68231 * 306.68893 * 11 9 8 40 40 H 1.09001 * 109.67440 * 67.20598 * 11 9 8 41 41 H 0.97004 * 120.00462 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.62699 * 68.57857 * 21 12 11 43 43 H 1.08995 * 109.62600 * 188.95839 * 21 12 11 44 44 H 1.08999 * 109.51580 * 172.81786 * 22 21 12 45 45 H 1.08997 * 109.51432 * 292.96610 * 22 21 12 46 46 H 1.07995 * 120.78778 * 359.96710 * 25 24 2 47 47 H 1.08005 * 120.41945 * 179.72516 * 26 25 24 48 48 H 1.08002 * 119.61838 * 180.02562 * 27 26 25 49 49 H 1.08008 * 119.61407 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1321 -1.9190 1.2346 6 7 2.3709 -0.0025 2.3263 7 6 2.9592 -0.5565 3.5600 8 6 3.7109 0.6364 4.2106 9 6 2.7645 1.8117 3.8794 10 6 2.2089 1.4509 2.4929 11 6 3.5515 3.1167 3.8169 12 7 2.5969 4.2286 3.6672 13 6 2.7713 5.1847 2.7026 14 1 1.9159 5.7023 2.2944 15 6 4.0476 5.4886 2.2494 16 7 5.1007 5.0277 2.8903 17 14 4.2707 6.5518 0.7296 18 1 3.6456 7.8792 0.9581 19 1 5.7198 6.7269 0.4564 20 1 3.6240 5.8938 -0.4340 21 6 1.4501 4.2792 4.5880 22 6 0.7538 2.9138 4.5753 23 8 1.7188 1.8903 4.8380 24 6 2.0324 -0.7104 -1.2304 25 6 2.8344 -0.0464 -2.1463 26 6 3.2690 -0.7382 -3.2662 27 6 2.8955 -2.0591 -3.4289 28 7 2.1354 -2.6601 -2.5348 29 6 1.7037 -2.0331 -1.4578 30 1 -0.3633 0.5325 -0.8789 31 1 -0.3632 -1.0275 -0.0217 32 1 -0.3633 0.4949 0.9006 33 1 2.1751 -0.9212 4.2234 34 1 3.6574 -1.3584 3.3202 35 1 4.6899 0.7823 3.7541 36 1 3.8010 0.4988 5.2882 37 1 2.7688 1.9777 1.7201 38 1 1.1534 1.7161 2.4323 39 1 4.1233 3.2450 4.7358 40 1 4.2287 3.0962 2.9630 41 1 5.9927 5.2398 2.5734 42 1 1.7995 4.5025 5.5960 43 1 0.7532 5.0516 4.2627 44 1 -0.0186 2.8917 5.3440 45 1 0.3010 2.7451 3.5983 46 1 3.1102 0.9865 -1.9930 47 1 3.8913 -0.2512 -4.0025 48 1 3.2303 -2.6052 -4.2985 49 1 1.0822 -2.5584 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972638016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:47 Heat of formation + Delta-G solvation = -10.264779 kcal Electronic energy + Delta-G solvation = -31853.001721 eV Core-core repulsion = 27781.021305 eV Total energy + Delta-G solvation = -4071.980416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.77363 -39.96128 -38.70299 -36.14276 -34.60705 -34.56140 -32.18578 -31.79670 -31.31032 -29.90681 -29.05878 -27.64264 -25.88875 -25.05542 -23.59039 -23.45722 -23.34117 -21.88647 -20.91976 -19.42325 -18.64792 -17.33984 -17.09704 -17.08152 -16.56189 -15.99691 -15.64248 -15.24870 -15.03315 -14.47716 -14.44712 -14.23566 -13.95839 -13.83403 -13.71447 -13.54979 -13.20044 -13.09264 -12.97056 -12.81707 -12.62400 -12.35995 -12.03351 -11.92635 -11.58483 -11.44788 -11.40976 -11.13907 -11.06601 -10.89734 -10.84964 -10.56017 -10.38637 -10.05057 -9.99843 -9.69813 -9.56822 -9.45536 -9.12552 -9.00019 -8.67364 -8.44521 -6.83691 -5.95051 -3.42131 1.03901 1.24594 2.70081 3.09116 3.25260 3.31864 3.32827 3.80224 4.14156 4.32363 4.32912 4.47712 4.63499 4.77197 4.84369 4.91487 4.95412 5.02479 5.10592 5.18982 5.20177 5.28071 5.39181 5.47012 5.51941 5.57123 5.63966 5.70128 5.74902 5.79058 5.83698 5.91048 5.94903 6.02444 6.04486 6.05129 6.21984 6.23276 6.25267 6.34005 6.43444 6.54654 6.66319 6.69286 6.96322 7.36315 7.59691 7.65160 7.81152 7.95018 8.22578 8.24466 9.00396 9.61718 10.19841 11.12749 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.004048 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.064483 B = 6915.742696 C = 8621.207105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 H 0.103 0.897 4 C 0.536 3.464 5 O -0.545 6.545 6 N -0.611 5.611 7 C 0.111 3.889 8 C -0.118 4.118 9 C 0.087 3.913 10 C 0.086 3.914 11 C 0.163 3.837 12 N -0.596 5.596 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.905 5.905 17 Si 0.904 3.096 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.109 3.891 22 C 0.044 3.956 23 O -0.374 6.374 24 C -0.125 4.125 25 C -0.067 4.067 26 C -0.178 4.178 27 C 0.093 3.907 28 N -0.490 5.490 29 C 0.133 3.867 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.100 0.900 41 H 0.257 0.743 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.153 0.847 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 -8.744 -5.251 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 H 0.121 0.879 4 C 0.325 3.675 5 O -0.423 6.423 6 N -0.344 5.344 7 C -0.011 4.011 8 C -0.156 4.156 9 C 0.045 3.955 10 C -0.036 4.036 11 C 0.037 3.963 12 N -0.320 5.320 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.549 5.549 17 Si 0.733 3.267 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.017 4.017 22 C -0.034 4.034 23 O -0.293 6.293 24 C -0.128 4.128 25 C -0.093 4.093 26 C -0.198 4.198 27 C -0.063 4.063 28 N -0.198 5.198 29 C -0.023 4.023 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.064 0.936 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.170 0.830 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.031 -10.363 -5.337 13.124 hybrid contribution 0.524 1.964 -0.761 2.171 sum -5.507 -8.398 -6.098 11.749 Atomic orbital electron populations 1.21710 0.91358 1.03107 1.03092 1.20168 0.98158 1.00305 0.90137 0.87887 1.19994 0.77303 0.87080 0.83161 1.90666 1.54785 1.13776 1.83058 1.48619 1.61756 1.09315 1.14726 1.22291 0.96973 0.96617 0.85260 1.22775 0.98092 0.92646 1.02103 1.22685 0.88544 0.98126 0.86173 1.22684 1.01895 0.79180 0.99863 1.21291 0.90766 0.81912 1.02367 1.44105 1.25850 1.26363 1.35637 1.19139 0.91779 1.14853 1.12674 0.91400 1.25097 0.95756 0.98974 0.99467 1.69931 0.97552 1.48125 1.39335 0.86352 0.76920 0.80592 0.82788 1.20756 1.21486 1.20944 1.21597 0.91308 0.94616 0.94224 1.23099 0.90816 0.89449 1.00011 1.87699 1.37562 1.54876 1.49174 1.20431 0.99896 0.96087 0.96349 1.21580 0.94233 1.00430 0.93052 1.22093 1.02314 0.96316 0.99028 1.22783 0.93777 0.92313 0.97474 1.67765 1.10720 1.38554 1.02779 1.22763 0.95711 0.90901 0.92965 0.91082 0.91613 0.91485 0.91267 0.90773 0.89065 0.89053 0.89793 0.91023 0.94868 0.88209 0.93305 0.95502 0.91868 0.89809 0.93623 0.84596 0.84790 0.82988 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.01 37.16 0.33 -1.16 16 2 C -0.07 -0.86 2.57 -92.93 -0.24 -1.10 16 3 H 0.10 1.32 6.65 -51.93 -0.35 0.97 16 4 C 0.54 8.43 6.82 -10.99 -0.07 8.35 16 5 O -0.54 -9.84 14.94 5.56 0.08 -9.76 16 6 N -0.61 -9.54 3.33 -170.51 -0.57 -10.11 16 7 C 0.11 1.64 6.90 -2.29 -0.02 1.62 16 8 C -0.12 -1.77 6.23 -24.74 -0.15 -1.93 16 9 C 0.09 1.51 0.80 -89.73 -0.07 1.44 16 10 C 0.09 1.41 5.27 -3.32 -0.02 1.39 16 11 C 0.16 3.50 3.94 -3.85 -0.02 3.48 16 12 N -0.60 -13.48 2.97 -172.18 -0.51 -13.99 16 13 C -0.26 -6.33 9.67 -15.06 -0.15 -6.48 16 14 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 15 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 16 N -0.91 -24.18 10.94 55.49 0.61 -23.57 16 17 Si 0.90 20.07 29.57 -169.99 -5.03 15.04 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.11 2.08 6.72 -3.54 -0.02 2.06 16 22 C 0.04 0.72 6.76 37.30 0.25 0.97 16 23 O -0.37 -6.60 10.26 -35.23 -0.36 -6.96 16 24 C -0.13 -1.67 4.73 -104.48 -0.49 -2.16 16 25 C -0.07 -0.81 9.81 -39.28 -0.39 -1.19 16 26 C -0.18 -1.91 10.11 -39.44 -0.40 -2.31 16 27 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 28 N -0.49 -6.95 10.36 -13.25 -0.14 -7.09 16 29 C 0.13 1.90 9.20 -17.55 -0.16 1.74 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.72 7.37 -51.93 -0.38 0.33 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 35 H 0.09 1.36 8.01 -51.93 -0.42 0.94 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.48 7.09 -51.93 -0.37 1.11 16 38 H 0.07 1.15 6.02 -51.93 -0.31 0.83 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 2.37 5.89 -51.93 -0.31 2.07 16 41 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.72 6.22 -51.93 -0.32 0.40 16 46 H 0.14 1.45 8.00 -52.49 -0.42 1.03 16 47 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 48 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.16 2.29 6.67 -52.48 -0.35 1.94 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -29.96 385.74 -9.41 -39.36 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.41 Total: 5.60 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -1.90 Total: 5.66 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.61 Total: -54.76 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.28 Total: -16.72 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.96 -9.41 -39.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972638016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.100 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds