Wall clock time and date at job start Wed Apr 1 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47170 * 2 1 4 4 C 1.50698 * 109.47467 * 119.99692 * 2 1 3 5 5 O 1.21281 * 119.99828 * 84.06003 * 4 2 1 6 6 N 1.34772 * 120.00416 * 264.06432 * 4 2 1 7 7 C 1.47485 * 125.66769 * 184.37530 * 6 4 2 8 8 C 1.55280 * 104.77817 * 155.88369 * 7 6 4 9 9 C 1.54492 * 101.42498 * 36.68942 * 8 7 6 10 10 C 1.47184 * 125.66252 * 4.67851 * 6 4 2 11 11 C 1.52518 * 110.09856 * 206.77811 * 9 8 7 12 12 N 1.47307 * 108.39614 * 186.95946 * 11 9 8 13 13 C 1.36937 * 121.06991 * 229.37686 * 12 11 9 14 14 H 1.07992 * 120.00488 * 152.07865 * 13 12 11 15 15 C 1.38809 * 119.99701 * 332.07911 * 13 12 11 16 16 N 1.31614 * 120.00416 * 348.78953 * 15 13 12 17 17 Si 1.86807 * 119.99978 * 168.78408 * 15 13 12 18 18 H 1.48496 * 109.46722 * 60.00201 * 17 15 13 19 19 H 1.48499 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47155 * 300.00280 * 17 15 13 21 21 C 1.47165 * 117.86715 * 49.40471 * 12 11 9 22 22 C 1.53276 * 108.54787 * 308.86473 * 21 12 11 23 23 O 1.42070 * 110.38317 * 83.74444 * 9 8 7 24 24 C 1.50697 * 109.47398 * 240.00101 * 2 1 3 25 25 C 1.38669 * 120.42207 * 120.25221 * 24 2 1 26 26 C 1.38629 * 118.41928 * 180.24810 * 25 24 2 27 27 C 1.38226 * 119.16331 * 359.74107 * 26 25 24 28 28 N 1.31851 * 120.76325 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72430 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47138 * 58.78915 * 1 2 3 31 31 H 1.09000 * 109.46612 * 178.79168 * 1 2 3 32 32 H 1.08997 * 109.46765 * 298.78778 * 1 2 3 33 33 H 1.08998 * 110.35405 * 274.84472 * 7 6 4 34 34 H 1.08998 * 110.35270 * 37.13242 * 7 6 4 35 35 H 1.09004 * 111.22558 * 278.59590 * 8 7 6 36 36 H 1.08999 * 110.93140 * 154.66040 * 8 7 6 37 37 H 1.09001 * 109.90822 * 300.88181 * 10 6 4 38 38 H 1.09001 * 109.90739 * 61.96065 * 10 6 4 39 39 H 1.08992 * 109.68231 * 306.68893 * 11 9 8 40 40 H 1.09001 * 109.67440 * 67.20598 * 11 9 8 41 41 H 0.97004 * 120.00462 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.62699 * 68.57857 * 21 12 11 43 43 H 1.08995 * 109.62600 * 188.95839 * 21 12 11 44 44 H 1.08999 * 109.51580 * 172.81786 * 22 21 12 45 45 H 1.08997 * 109.51432 * 292.96610 * 22 21 12 46 46 H 1.07995 * 120.78778 * 359.96710 * 25 24 2 47 47 H 1.08005 * 120.41945 * 179.72516 * 26 25 24 48 48 H 1.08002 * 119.61838 * 180.02562 * 27 26 25 49 49 H 1.08008 * 119.61407 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.1321 -1.9190 1.2346 6 7 2.3709 -0.0025 2.3263 7 6 2.9592 -0.5565 3.5600 8 6 3.7109 0.6364 4.2106 9 6 2.7645 1.8117 3.8794 10 6 2.2089 1.4509 2.4929 11 6 3.5515 3.1167 3.8169 12 7 2.5969 4.2286 3.6672 13 6 2.7713 5.1847 2.7026 14 1 1.9159 5.7023 2.2944 15 6 4.0476 5.4886 2.2494 16 7 5.1007 5.0277 2.8903 17 14 4.2707 6.5518 0.7296 18 1 3.6456 7.8792 0.9581 19 1 5.7198 6.7269 0.4564 20 1 3.6240 5.8938 -0.4340 21 6 1.4501 4.2792 4.5880 22 6 0.7538 2.9138 4.5753 23 8 1.7188 1.8903 4.8380 24 6 2.0324 -0.7104 -1.2304 25 6 2.8344 -0.0464 -2.1463 26 6 3.2690 -0.7382 -3.2662 27 6 2.8955 -2.0591 -3.4289 28 7 2.1354 -2.6601 -2.5348 29 6 1.7037 -2.0331 -1.4578 30 1 -0.3633 0.5325 -0.8789 31 1 -0.3632 -1.0275 -0.0217 32 1 -0.3633 0.4949 0.9006 33 1 2.1751 -0.9212 4.2234 34 1 3.6574 -1.3584 3.3202 35 1 4.6899 0.7823 3.7541 36 1 3.8010 0.4988 5.2882 37 1 2.7688 1.9777 1.7201 38 1 1.1534 1.7161 2.4323 39 1 4.1233 3.2450 4.7358 40 1 4.2287 3.0962 2.9630 41 1 5.9927 5.2398 2.5734 42 1 1.7995 4.5025 5.5960 43 1 0.7532 5.0516 4.2627 44 1 -0.0186 2.8917 5.3440 45 1 0.3010 2.7451 3.5983 46 1 3.1102 0.9865 -1.9930 47 1 3.8913 -0.2512 -4.0025 48 1 3.2303 -2.6052 -4.2985 49 1 1.0822 -2.5584 -0.7476 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972638016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:45 Heat of formation + Delta-G solvation = -27.959950 kcal Electronic energy + Delta-G solvation = -31853.769041 eV Core-core repulsion = 27781.021305 eV Total energy + Delta-G solvation = -4072.747736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.93288 -41.14140 -39.98292 -37.51187 -36.24017 -35.65094 -33.31273 -33.11624 -32.93930 -31.00695 -30.24031 -29.19633 -27.46851 -26.15051 -24.98317 -24.67942 -24.48293 -23.15126 -22.22815 -20.79500 -19.96756 -18.82768 -18.50105 -18.05191 -17.89309 -17.19043 -16.86673 -16.59095 -16.36483 -16.07923 -15.72576 -15.47675 -15.21342 -15.15783 -14.89013 -14.76475 -14.65157 -14.49843 -14.05420 -13.98815 -13.67486 -13.52698 -13.32282 -13.16665 -12.92764 -12.80905 -12.72356 -12.58110 -12.44876 -12.36317 -12.26728 -12.14497 -12.12470 -11.76139 -11.16330 -11.06180 -10.74671 -10.64591 -10.47809 -10.41209 -9.96400 -9.72692 -8.66682 -7.86062 -5.35553 0.10440 0.31029 1.48090 1.49968 1.51118 1.57493 1.88426 2.49778 2.80248 2.84213 3.28519 3.30673 3.39163 3.43556 3.65053 3.69456 3.77878 3.92969 3.99927 4.03174 4.06857 4.17581 4.23040 4.30856 4.32937 4.36336 4.52537 4.57419 4.62963 4.65737 4.70923 4.76302 4.79427 4.81864 4.88210 4.93003 4.97416 5.07689 5.09317 5.13372 5.16067 5.22238 5.27859 5.31711 5.58355 5.65295 5.75118 6.33188 6.38209 6.42367 6.98422 7.03113 7.11404 7.78549 8.33569 9.19288 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.004048 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.064483 B = 6915.742696 C = 8621.207105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 H 0.106 0.894 4 C 0.534 3.466 5 O -0.570 6.570 6 N -0.612 5.612 7 C 0.114 3.886 8 C -0.112 4.112 9 C 0.092 3.908 10 C 0.100 3.900 11 C 0.175 3.825 12 N -0.612 5.612 13 C -0.259 4.259 14 H 0.074 0.926 15 C -0.043 4.043 16 N -0.936 5.936 17 Si 0.962 3.038 18 H -0.279 1.279 19 H -0.299 1.299 20 H -0.271 1.271 21 C 0.104 3.896 22 C 0.049 3.951 23 O -0.378 6.378 24 C -0.135 4.135 25 C -0.077 4.077 26 C -0.170 4.170 27 C 0.087 3.913 28 N -0.515 5.515 29 C 0.117 3.883 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.001 0.999 40 H 0.073 0.927 41 H 0.250 0.750 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.055 0.945 46 H 0.149 0.851 47 H 0.167 0.833 48 H 0.183 0.817 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -8.714 -6.487 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 H 0.124 0.876 4 C 0.324 3.676 5 O -0.450 6.450 6 N -0.345 5.345 7 C -0.008 4.008 8 C -0.150 4.150 9 C 0.050 3.950 10 C -0.022 4.022 11 C 0.049 3.951 12 N -0.336 5.336 13 C -0.388 4.388 14 H 0.091 0.909 15 C -0.238 4.238 16 N -0.582 5.582 17 Si 0.790 3.210 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.197 1.197 21 C -0.021 4.021 22 C -0.028 4.028 23 O -0.297 6.297 24 C -0.138 4.138 25 C -0.103 4.103 26 C -0.189 4.189 27 C -0.070 4.070 28 N -0.225 5.225 29 C -0.039 4.039 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.019 0.981 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.073 0.927 46 H 0.167 0.833 47 H 0.184 0.816 48 H 0.200 0.800 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.193 -10.335 -6.558 14.197 hybrid contribution 0.880 1.983 -0.354 2.198 sum -6.313 -8.352 -6.911 12.545 Atomic orbital electron populations 1.21711 0.89831 1.03295 1.03998 1.20176 0.99383 0.99823 0.88821 0.87631 1.20479 0.76652 0.86861 0.83645 1.90655 1.55888 1.14960 1.83508 1.48664 1.61747 1.08933 1.15140 1.22307 0.97134 0.96345 0.85056 1.22760 0.97481 0.91726 1.03042 1.22434 0.88710 0.96623 0.87193 1.22415 1.01894 0.79452 0.98469 1.21000 0.90719 0.83875 0.99495 1.44358 1.26734 1.26433 1.36105 1.19469 0.91895 1.14660 1.12806 0.90866 1.25754 0.95620 1.00495 1.01966 1.70101 0.97560 1.49738 1.40788 0.85433 0.76107 0.79196 0.80276 1.20532 1.22513 1.19696 1.21771 0.90473 0.97047 0.92827 1.23169 0.90683 0.87047 1.01887 1.87710 1.37573 1.55124 1.49272 1.20464 1.00615 0.95926 0.96779 1.21863 0.93919 1.01197 0.93287 1.22456 1.01568 0.95943 0.98944 1.23344 0.92889 0.93044 0.97692 1.67741 1.11848 1.39478 1.03387 1.22649 0.96538 0.91417 0.93324 0.89468 0.91855 0.91166 0.90604 0.90463 0.89352 0.87758 0.91269 0.90215 0.98056 0.90867 0.94069 0.96608 0.90862 0.86408 0.92672 0.83321 0.81589 0.80027 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.01 71.98 0.65 -2.07 16 2 C -0.06 -1.52 2.57 -12.29 -0.03 -1.55 16 3 H 0.11 2.58 6.65 -2.39 -0.02 2.57 16 4 C 0.53 16.46 6.82 87.66 0.60 17.06 16 5 O -0.57 -20.56 14.94 -3.03 -0.05 -20.60 16 6 N -0.61 -18.58 3.33 -811.77 -2.70 -21.28 16 7 C 0.11 3.24 6.90 86.97 0.60 3.84 16 8 C -0.11 -3.30 6.23 31.88 0.20 -3.11 16 9 C 0.09 3.17 0.80 -10.22 -0.01 3.16 16 10 C 0.10 3.18 5.27 86.47 0.46 3.64 16 11 C 0.18 7.68 3.94 86.07 0.34 8.02 16 12 N -0.61 -27.68 2.97 -698.67 -2.07 -29.76 16 13 C -0.26 -12.77 9.67 84.03 0.81 -11.96 16 14 H 0.07 3.48 7.85 -2.91 -0.02 3.45 16 15 C -0.04 -2.18 5.08 84.86 0.43 -1.75 16 16 N -0.94 -51.22 10.94 21.65 0.24 -50.99 16 17 Si 0.96 41.14 29.57 68.60 2.03 43.17 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.30 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 C 0.10 3.86 6.72 86.34 0.58 4.44 16 22 C 0.05 1.48 6.76 72.07 0.49 1.97 16 23 O -0.38 -12.66 10.26 -148.98 -1.53 -14.19 16 24 C -0.14 -3.50 4.73 -19.77 -0.09 -3.59 16 25 C -0.08 -1.72 9.81 22.47 0.22 -1.49 16 26 C -0.17 -3.22 10.11 22.36 0.23 -3.00 16 27 C 0.09 1.84 11.18 84.69 0.95 2.78 16 28 N -0.52 -14.29 10.36 -195.84 -2.03 -16.32 16 29 C 0.12 3.32 9.20 84.67 0.78 4.10 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.34 7.37 -2.39 -0.02 1.32 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.09 2.66 8.01 -2.38 -0.02 2.64 16 36 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.07 2.42 7.09 -2.39 -0.02 2.40 16 38 H 0.08 2.40 6.02 -2.39 -0.01 2.39 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.07 3.60 5.89 -2.39 -0.01 3.59 16 41 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 44 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.06 1.58 6.22 -2.39 -0.01 1.56 16 46 H 0.15 2.87 8.00 -2.91 -0.02 2.84 16 47 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 49 H 0.15 4.38 6.67 -2.91 -0.02 4.36 16 Total: -1.00 -65.09 385.74 2.02 -63.07 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.95 Total: 26.40 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 7.19 Total: 20.50 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -6.57 Total: -118.34 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.57 Total: -34.79 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -65.09 2.02 -63.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972638016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.107 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds