Wall clock time and date at job start Wed Apr 1 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47147 * 2 1 4 4 C 1.50702 * 109.46832 * 239.99501 * 2 1 3 5 5 O 1.21274 * 120.00499 * 239.99706 * 4 2 1 6 6 N 1.34778 * 119.99504 * 60.00540 * 4 2 1 7 7 C 1.47481 * 125.67117 * 0.02562 * 6 4 2 8 8 C 1.55018 * 104.89918 * 155.94667 * 7 6 4 9 9 C 1.54523 * 101.56745 * 36.36809 * 8 7 6 10 10 C 1.47189 * 125.66328 * 179.97438 * 6 4 2 11 11 C 1.52507 * 110.04242 * 206.94050 * 9 8 7 12 12 N 1.47295 * 108.46513 * 187.27016 * 11 9 8 13 13 C 1.36939 * 121.05727 * 229.35549 * 12 11 9 14 14 H 1.07996 * 119.99609 * 153.87468 * 13 12 11 15 15 C 1.38807 * 119.99976 * 333.87206 * 13 12 11 16 16 N 1.31617 * 120.00087 * 343.62351 * 15 13 12 17 17 Si 1.86801 * 119.99779 * 163.62598 * 15 13 12 18 18 H 1.48496 * 109.47482 * 90.00109 * 17 15 13 19 19 H 1.48503 * 109.47165 * 210.00341 * 17 15 13 20 20 H 1.48505 * 109.46950 * 329.99720 * 17 15 13 21 21 C 1.47157 * 117.88088 * 49.33110 * 12 11 9 22 22 C 1.53291 * 108.49878 * 308.80369 * 21 12 11 23 23 O 1.42056 * 110.33124 * 83.94526 * 9 8 7 24 24 C 1.50694 * 109.47130 * 119.99818 * 2 1 3 25 25 C 1.38675 * 120.42011 * 239.99472 * 24 2 1 26 26 C 1.38627 * 118.42183 * 180.02562 * 25 24 2 27 27 C 1.38226 * 119.16161 * 0.02562 * 26 25 24 28 28 N 1.31858 * 120.76682 * 359.97438 * 27 26 25 29 29 C 1.31890 * 121.71763 * 359.70707 * 28 27 26 30 30 H 1.09003 * 109.47665 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46851 * 300.00363 * 1 2 3 32 32 H 1.09002 * 109.47405 * 60.00358 * 1 2 3 33 33 H 1.09007 * 110.35193 * 37.09766 * 7 6 4 34 34 H 1.08994 * 110.35761 * 274.81249 * 7 6 4 35 35 H 1.09010 * 111.00924 * 154.44373 * 8 7 6 36 36 H 1.08998 * 111.02108 * 278.28089 * 8 7 6 37 37 H 1.09002 * 109.90604 * 300.91213 * 10 6 4 38 38 H 1.09003 * 109.90897 * 61.97986 * 10 6 4 39 39 H 1.09003 * 109.64342 * 306.96596 * 11 9 8 40 40 H 1.09009 * 109.63798 * 67.37510 * 11 9 8 41 41 H 0.97011 * 119.99560 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.63510 * 68.50647 * 21 12 11 43 43 H 1.09007 * 109.62964 * 188.90335 * 21 12 11 44 44 H 1.08995 * 109.51509 * 172.91261 * 22 21 12 45 45 H 1.09004 * 109.51016 * 293.06482 * 22 21 12 46 46 H 1.07992 * 120.78652 * 0.02934 * 25 24 2 47 47 H 1.07998 * 120.42286 * 180.02562 * 26 25 24 48 48 H 1.08005 * 119.61756 * 179.97438 * 27 26 25 49 49 H 1.08008 * 119.61146 * 180.30993 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 0.8712 0.9327 -2.7343 8 6 1.2936 1.3925 -4.1531 9 6 1.5514 0.0394 -4.8534 10 6 2.1267 -0.8434 -3.7343 11 6 2.5703 0.2167 -5.9742 12 7 2.6593 -1.0457 -6.7278 13 6 3.8717 -1.6180 -7.0068 14 1 3.9424 -2.6843 -7.1626 15 6 5.0097 -0.8275 -7.0894 16 7 4.8966 0.4770 -7.2230 17 14 6.7017 -1.6152 -7.0108 18 1 7.1483 -1.9667 -8.3827 19 1 7.6648 -0.6600 -6.4062 20 1 6.6371 -2.8449 -6.1808 21 6 1.4038 -1.6727 -7.1709 22 6 0.4641 -1.7846 -5.9650 23 8 0.3340 -0.5000 -5.3484 24 6 2.0323 -0.7103 1.2304 25 6 2.8302 -0.0448 2.1489 26 6 3.2697 -0.7383 3.2659 27 6 2.9010 -2.0609 3.4257 28 7 2.1408 -2.6620 2.5316 29 6 1.6995 -2.0316 1.4604 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.0709 1.7188 -2.0059 34 1 -0.1847 0.6626 -2.7218 35 1 0.4874 1.9388 -4.6431 36 1 2.2027 1.9925 -4.1152 37 1 3.2148 -0.8588 -3.7969 38 1 1.7359 -1.8573 -3.8194 39 1 2.2480 1.0182 -6.6390 40 1 3.5435 0.4625 -5.5491 41 1 5.6920 1.0294 -7.2803 42 1 0.9391 -1.0574 -7.9413 43 1 1.6114 -2.6653 -7.5706 44 1 -0.5149 -2.1299 -6.2971 45 1 0.8765 -2.4932 -5.2466 46 1 3.1026 0.9892 1.9975 47 1 3.8922 -0.2514 4.0019 48 1 3.2396 -2.6083 4.2930 49 1 1.0746 -2.5557 0.7523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972638018.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:50 Heat of formation + Delta-G solvation = -27.725685 kcal Electronic energy + Delta-G solvation = -31533.680263 eV Core-core repulsion = 27460.942685 eV Total energy + Delta-G solvation = -4072.737577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.92988 -41.13209 -39.95850 -37.56374 -36.29839 -35.67876 -33.37238 -33.17494 -32.88180 -30.79115 -30.37295 -29.19746 -27.61259 -26.02838 -25.07136 -24.65066 -24.40057 -22.95348 -22.62654 -20.58535 -20.17202 -18.91307 -18.33122 -18.10057 -17.76636 -17.22452 -17.00453 -16.59788 -16.24725 -16.11156 -15.82164 -15.56240 -15.33722 -15.21222 -14.88848 -14.64099 -14.59769 -14.48850 -14.17660 -13.96240 -13.65196 -13.42786 -13.34726 -13.23546 -13.02718 -12.83654 -12.73003 -12.54712 -12.45432 -12.33997 -12.20061 -12.18568 -12.08315 -11.78110 -11.17299 -10.97003 -10.81316 -10.67345 -10.52329 -10.39736 -9.91776 -9.71527 -8.75282 -7.95266 -5.39618 0.15003 0.36368 1.38816 1.41951 1.50381 1.55230 1.90711 2.42299 2.75383 2.87602 3.19096 3.33134 3.40279 3.51078 3.63275 3.70637 3.77994 3.96339 4.02384 4.04011 4.12270 4.19486 4.22252 4.27561 4.36700 4.38619 4.49324 4.56574 4.62269 4.65612 4.75154 4.79919 4.81213 4.85199 4.90244 4.91773 5.02333 5.05102 5.15492 5.18851 5.20477 5.21623 5.24181 5.34321 5.49375 5.57288 5.78440 6.25407 6.33970 6.50678 7.03137 7.04134 7.08612 7.72200 8.24990 9.10622 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.003256 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.244333 B = 8597.820638 C = 9770.919383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 H 0.138 0.862 4 C 0.521 3.479 5 O -0.588 6.588 6 N -0.611 5.611 7 C 0.103 3.897 8 C -0.114 4.114 9 C 0.093 3.907 10 C 0.110 3.890 11 C 0.173 3.827 12 N -0.615 5.615 13 C -0.263 4.263 14 H 0.064 0.936 15 C -0.042 4.042 16 N -0.929 5.929 17 Si 0.957 3.043 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.105 3.895 22 C 0.051 3.949 23 O -0.369 6.369 24 C -0.127 4.127 25 C -0.072 4.072 26 C -0.169 4.169 27 C 0.079 3.921 28 N -0.521 5.521 29 C 0.108 3.892 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.012 0.988 40 H 0.063 0.937 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.067 0.933 44 H 0.124 0.876 45 H 0.039 0.961 46 H 0.166 0.834 47 H 0.170 0.830 48 H 0.177 0.823 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 6.186 18.736 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 H 0.156 0.844 4 C 0.312 3.688 5 O -0.468 6.468 6 N -0.344 5.344 7 C -0.018 4.018 8 C -0.153 4.153 9 C 0.051 3.949 10 C -0.014 4.014 11 C 0.047 3.953 12 N -0.340 5.340 13 C -0.393 4.393 14 H 0.082 0.918 15 C -0.238 4.238 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.021 4.021 22 C -0.026 4.026 23 O -0.288 6.288 24 C -0.130 4.130 25 C -0.098 4.098 26 C -0.189 4.189 27 C -0.078 4.078 28 N -0.230 5.230 29 C -0.048 4.048 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.142 0.858 45 H 0.057 0.943 46 H 0.183 0.817 47 H 0.187 0.813 48 H 0.194 0.806 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.480 4.948 18.976 22.724 hybrid contribution 1.952 -0.231 -0.970 2.192 sum -9.529 4.716 18.006 20.911 Atomic orbital electron populations 1.21971 0.89746 1.03115 1.05276 1.20217 0.99416 1.00576 0.86923 0.84403 1.21003 0.79469 0.84177 0.84193 1.90723 1.40399 1.28974 1.86750 1.48662 1.51055 1.30346 1.04319 1.22778 0.95417 0.86788 0.96802 1.22806 1.04046 0.93879 0.94522 1.22458 0.86039 0.94229 0.92192 1.22070 0.98318 0.97244 0.83743 1.21012 0.96631 0.87140 0.90514 1.44371 1.01521 1.25517 1.62559 1.19425 0.85508 0.91435 1.42909 0.91781 1.25629 1.01282 0.96133 1.00791 1.70125 1.28571 1.04496 1.54279 0.85436 0.80564 0.77626 0.77847 1.20584 1.21568 1.20526 1.21770 0.87253 0.97640 0.95389 1.23113 1.00977 0.84613 0.93942 1.87661 1.29789 1.34786 1.76545 1.20489 1.00088 0.95562 0.96826 1.21903 0.93456 1.01662 0.92740 1.22489 1.01322 0.95668 0.99399 1.23301 0.93366 0.93530 0.97559 1.67652 1.11980 1.39684 1.03718 1.22421 0.96861 0.91979 0.93544 0.93292 0.88848 0.89189 0.86449 0.88664 0.86780 0.89215 0.94379 0.93184 0.97023 0.91854 0.93878 0.95610 0.91493 0.85789 0.94321 0.81684 0.81276 0.80566 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.82 71.98 0.63 -1.38 16 2 C -0.05 -0.96 2.27 -12.29 -0.03 -0.99 16 3 H 0.14 1.76 7.64 -2.39 -0.02 1.74 16 4 C 0.52 15.94 7.09 87.66 0.62 16.56 16 5 O -0.59 -24.36 15.47 -3.01 -0.05 -24.40 16 6 N -0.61 -18.13 3.33 -812.21 -2.70 -20.83 16 7 C 0.10 2.05 5.14 86.88 0.45 2.50 16 8 C -0.11 -2.95 6.21 31.80 0.20 -2.75 16 9 C 0.09 3.35 0.81 -10.20 -0.01 3.34 16 10 C 0.11 4.25 5.97 86.49 0.52 4.76 16 11 C 0.17 8.10 3.97 86.06 0.34 8.44 16 12 N -0.62 -30.87 2.98 -698.66 -2.08 -32.95 16 13 C -0.26 -14.62 9.66 84.03 0.81 -13.81 16 14 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 15 C -0.04 -2.38 4.96 84.86 0.42 -1.96 16 16 N -0.93 -54.01 11.13 21.65 0.24 -53.76 16 17 Si 0.96 45.91 29.58 68.60 2.03 47.94 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 21 C 0.10 4.30 6.72 86.35 0.58 4.88 16 22 C 0.05 1.73 6.76 72.08 0.49 2.22 16 23 O -0.37 -12.80 10.25 -148.97 -1.53 -14.32 16 24 C -0.13 -2.87 4.40 -19.78 -0.09 -2.96 16 25 C -0.07 -1.25 9.81 22.47 0.22 -1.03 16 26 C -0.17 -2.73 10.11 22.36 0.23 -2.50 16 27 C 0.08 1.62 11.18 84.69 0.95 2.57 16 28 N -0.52 -14.60 10.36 -195.83 -2.03 -16.63 16 29 C 0.11 3.02 9.13 84.67 0.77 3.79 16 30 H 0.05 0.85 7.40 -2.39 -0.02 0.83 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.00 5.00 -2.39 -0.01 0.99 16 33 H 0.12 1.41 7.37 -2.38 -0.02 1.39 16 34 H 0.10 1.60 7.07 -2.39 -0.02 1.58 16 35 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.09 2.36 8.01 -2.39 -0.02 2.34 16 37 H 0.04 1.79 7.61 -2.39 -0.02 1.77 16 38 H 0.05 2.10 6.05 -2.39 -0.01 2.09 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 3.37 5.93 -2.38 -0.01 3.36 16 41 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 2.64 7.96 -2.38 -0.02 2.62 16 44 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.04 1.39 6.25 -2.38 -0.01 1.38 16 46 H 0.17 1.72 8.00 -2.91 -0.02 1.69 16 47 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 48 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 49 H 0.13 3.90 7.53 -2.91 -0.02 3.88 16 Total: -1.00 -78.65 382.25 1.94 -76.71 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.96 Total: 16.56 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 7.10 Total: 21.70 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -6.57 Total: -124.19 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.57 Total: -38.73 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -78.65 1.94 -76.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972638018.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.980 kcal (2) G-P(sol) polarization free energy of solvation -78.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds