Wall clock time and date at job start Wed Apr 1 2020 03:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21555 * 120.00395 * 0.02562 * 5 4 2 7 7 C 1.47865 * 120.00031 * 180.02562 * 5 4 2 8 8 C 1.39702 * 120.07194 * 359.72696 * 7 5 4 9 9 C 1.38059 * 120.14243 * 179.72086 * 8 7 5 10 10 C 1.38096 * 120.29605 * 0.55525 * 9 8 7 11 11 C 1.39665 * 120.14506 * 359.72149 * 10 9 8 12 12 C 1.47864 * 120.07257 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00007 * 359.97438 * 12 11 10 14 14 O 1.21554 * 119.99883 * 179.97438 * 12 11 10 15 15 C 1.39297 * 120.07226 * 180.02562 * 7 5 4 16 16 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 17 17 C 1.53041 * 109.46332 * 180.02562 * 16 2 1 18 18 C 1.53190 * 109.31361 * 178.60104 * 17 16 2 19 19 N 1.46924 * 108.76422 * 54.65229 * 18 17 16 20 20 C 1.36938 * 120.62707 * 126.40600 * 19 18 17 21 21 H 1.07997 * 120.00548 * 331.82331 * 20 19 18 22 22 C 1.38818 * 119.99900 * 151.82191 * 20 19 18 23 23 N 1.31619 * 119.99776 * 343.07628 * 22 20 19 24 24 Si 1.86794 * 120.00037 * 163.07248 * 22 20 19 25 25 H 1.48504 * 109.47271 * 90.00439 * 24 22 20 26 26 H 1.48498 * 109.47246 * 210.00631 * 24 22 20 27 27 H 1.48500 * 109.47104 * 330.00259 * 24 22 20 28 28 C 1.46921 * 118.74105 * 306.38135 * 19 18 17 29 29 C 1.53043 * 109.45889 * 59.96913 * 16 2 1 30 30 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 32 32 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 33 33 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 34 34 H 1.08001 * 119.92835 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.85094 * 180.27730 * 9 8 7 36 36 H 1.08006 * 119.92787 * 179.69772 * 10 9 8 37 37 H 0.96994 * 119.99844 * 359.97438 * 13 12 11 38 38 H 0.96994 * 119.99557 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.14903 * 359.97438 * 15 7 5 40 40 H 1.08998 * 109.45946 * 299.99944 * 16 2 1 41 41 H 1.09006 * 109.49033 * 298.56713 * 17 16 2 42 42 H 1.09004 * 109.49907 * 58.65693 * 17 16 2 43 43 H 1.09003 * 109.59716 * 294.86739 * 18 17 16 44 44 H 1.08999 * 109.70155 * 174.50222 * 18 17 16 45 45 H 0.97000 * 119.99690 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.59222 * 293.82594 * 28 19 18 47 47 H 1.09006 * 109.70406 * 173.46617 * 28 19 18 48 48 H 1.08996 * 109.49606 * 301.33993 * 29 16 2 49 49 H 1.08999 * 109.49655 * 61.40257 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8575 1.1612 2.4118 7 6 2.6405 -0.7149 3.5644 8 6 2.9683 -2.0716 3.5047 9 6 3.4345 -2.7222 4.6296 10 6 3.5693 -2.0406 5.8230 11 6 3.2397 -0.6855 5.8979 12 6 3.3852 0.0429 7.1764 13 7 3.8358 -0.6010 8.2713 14 8 3.0984 1.2224 7.2400 15 6 2.7736 -0.0215 4.7651 16 6 2.0401 -0.7213 -1.2492 17 6 3.5705 -0.7217 -1.2486 18 6 4.0774 -1.4748 -2.4825 19 7 3.4748 -0.8771 -3.6817 20 6 4.2607 -0.4516 -4.7193 21 1 5.2718 -0.1221 -4.5310 22 6 3.7578 -0.4439 -6.0131 23 7 2.6779 -1.1381 -6.3035 24 14 4.6135 0.5517 -7.3419 25 1 5.6370 -0.2914 -8.0104 26 1 3.6140 1.0038 -8.3427 27 1 5.2699 1.7344 -6.7289 28 6 2.0130 -0.7449 -3.7468 29 6 1.5292 -0.0001 -2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 1.1527 34 1 2.8605 -2.6116 2.5757 35 1 3.6908 -3.7701 4.5770 36 1 3.9301 -2.5567 6.7005 37 1 4.0643 -1.5423 8.2207 38 1 3.9309 -0.1233 9.1101 39 1 2.5174 1.0264 4.8177 40 1 1.6767 -1.7489 -1.2490 41 1 3.9344 0.3055 -1.2740 42 1 3.9338 -1.2146 -0.3469 43 1 3.7905 -2.5242 -2.4137 44 1 5.1629 -1.3959 -2.5409 45 1 2.3263 -1.1324 -7.2075 46 1 1.5577 -1.7347 -3.7811 47 1 1.7341 -0.1833 -4.6385 48 1 0.4395 0.0205 -2.4867 49 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997183918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:53 Heat of formation + Delta-G solvation = -36.350623 kcal Electronic energy + Delta-G solvation = -29807.685610 eV Core-core repulsion = 25734.574028 eV Total energy + Delta-G solvation = -4073.111583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.80698 -39.86400 -38.45646 -37.69169 -35.37900 -34.33770 -33.06177 -31.91452 -31.49819 -30.87432 -29.68808 -28.99880 -25.48803 -24.76064 -24.33337 -22.73748 -22.03026 -21.59854 -20.61648 -20.31812 -19.25239 -18.75678 -17.47358 -16.96471 -16.69373 -16.46251 -16.07117 -15.28636 -15.06882 -14.92255 -14.77745 -14.67732 -14.19895 -14.09756 -13.83813 -13.59439 -13.39878 -13.33002 -12.98481 -12.79637 -12.47176 -12.34595 -12.22790 -11.83288 -11.77852 -11.36660 -11.12798 -10.99310 -10.69593 -10.54737 -10.43532 -10.25012 -10.19392 -10.16594 -10.05153 -9.88313 -9.57093 -9.51773 -9.48794 -9.44139 -8.97774 -8.46278 -6.65905 -5.78704 -3.20682 0.19543 0.65737 2.20993 2.87936 2.89584 3.14483 3.37619 3.44928 3.47850 3.54653 4.19709 4.25792 4.34620 4.50385 4.61602 4.68705 4.91209 4.94171 5.12792 5.21302 5.33487 5.38785 5.43405 5.52418 5.66258 5.70795 5.73241 5.77767 5.82515 5.86279 5.95474 6.07619 6.17461 6.22492 6.27389 6.32415 6.32628 6.44867 6.51279 6.61369 6.71763 6.76845 6.81954 6.84550 6.98724 7.36489 7.46073 7.66165 7.77986 7.80198 8.13627 8.45959 9.22268 9.85812 10.42413 11.29784 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.002006 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.682068 B =13957.987399 C =14220.794307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.088 0.912 4 N -0.713 5.713 5 C 0.556 3.444 6 O -0.533 6.533 7 C -0.136 4.136 8 C -0.059 4.059 9 C -0.132 4.132 10 C -0.065 4.065 11 C -0.149 4.149 12 C 0.564 3.436 13 N -0.851 5.851 14 O -0.533 6.533 15 C -0.001 4.001 16 C -0.084 4.084 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.251 4.251 21 H 0.064 0.936 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.172 3.828 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.397 0.603 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.130 0.870 37 H 0.400 0.600 38 H 0.406 0.594 39 H 0.150 0.850 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -6.960 26.470 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.106 0.894 4 N -0.364 5.364 5 C 0.342 3.658 6 O -0.410 6.410 7 C -0.139 4.139 8 C -0.078 4.078 9 C -0.150 4.150 10 C -0.084 4.084 11 C -0.152 4.152 12 C 0.350 3.650 13 N -0.416 5.416 14 O -0.409 6.409 15 C -0.021 4.021 16 C -0.103 4.103 17 C -0.165 4.165 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.046 3.954 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.237 0.763 39 H 0.168 0.832 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.073 0.927 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.092 -5.357 26.161 26.726 hybrid contribution 0.704 -0.464 -0.399 0.933 sum -0.388 -5.821 25.762 26.414 Atomic orbital electron populations 1.22205 0.95399 1.01978 1.02485 1.21224 0.93819 0.97680 0.83248 0.89409 1.46052 1.66705 1.13985 1.09662 1.18139 0.78035 0.86593 0.83036 1.90802 1.50016 1.15367 1.84839 1.20043 1.04717 0.94440 0.94675 1.21613 0.93880 0.93189 0.99075 1.21071 1.00860 1.00759 0.92292 1.21462 0.95773 0.92866 0.98323 1.19824 1.06556 0.94545 0.94317 1.18218 0.76373 0.86452 0.83947 1.43727 1.69903 1.15207 1.12756 1.90864 1.49382 1.15546 1.85150 1.21414 0.90252 1.01026 0.89402 1.21338 0.96427 0.99258 0.93243 1.22050 0.94499 1.01462 0.98526 1.20884 0.96547 0.93840 0.86782 1.44043 1.02049 1.69880 1.15514 1.19164 0.97219 1.36090 0.85583 0.91835 1.25036 0.98427 0.99179 0.97062 1.70027 1.24562 1.40962 1.19236 0.86322 0.78674 0.80257 0.81684 1.21442 1.21558 1.20494 1.20760 0.83261 0.96791 0.94582 1.22272 0.98894 1.00132 0.96060 0.92644 0.90847 0.92663 0.76730 0.84783 0.84434 0.85177 0.77004 0.76262 0.83185 0.91489 0.92279 0.93488 0.96711 0.92963 0.93675 0.96515 0.89462 0.92745 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.13 37.16 0.34 -1.73 16 2 C 0.14 1.98 2.16 -67.93 -0.15 1.83 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 N -0.71 -8.37 4.31 -54.74 -0.24 -8.61 16 5 C 0.56 7.42 7.74 -12.32 -0.10 7.32 16 6 O -0.53 -9.21 16.00 5.32 0.09 -9.13 16 7 C -0.14 -1.44 5.87 -105.02 -0.62 -2.06 16 8 C -0.06 -0.43 9.54 -39.10 -0.37 -0.80 16 9 C -0.13 -0.72 10.02 -39.70 -0.40 -1.11 16 10 C -0.07 -0.36 9.54 -39.10 -0.37 -0.73 16 11 C -0.15 -1.31 5.87 -105.02 -0.62 -1.93 16 12 C 0.56 5.30 8.05 -12.32 -0.10 5.20 16 13 N -0.85 -3.85 8.82 30.53 0.27 -3.58 16 14 O -0.53 -7.46 17.18 5.32 0.09 -7.37 16 15 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 16 C -0.08 -1.27 1.79 -90.58 -0.16 -1.44 16 17 C -0.13 -2.07 5.22 -26.61 -0.14 -2.21 16 18 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 19 N -0.59 -14.52 2.99 -172.32 -0.52 -15.04 16 20 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 21 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 23 N -0.90 -25.96 11.19 55.49 0.62 -25.34 16 24 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 29 C -0.13 -2.42 5.04 -26.61 -0.13 -2.55 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.40 3.62 6.41 -40.82 -0.26 3.36 16 34 H 0.13 0.71 6.39 -52.49 -0.34 0.37 16 35 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 36 H 0.13 0.23 6.39 -52.48 -0.34 -0.11 16 37 H 0.40 0.52 6.85 -40.82 -0.28 0.24 16 38 H 0.41 1.40 8.93 -40.82 -0.36 1.03 16 39 H 0.15 2.02 7.23 -52.49 -0.38 1.64 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.64 7.41 -51.93 -0.38 0.26 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.29 6.07 -51.93 -0.31 1.97 16 48 H 0.05 0.88 6.36 -51.93 -0.33 0.55 16 49 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -35.49 392.00 -9.30 -44.79 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.05 Total: 2.46 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.44 Total: -0.74 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.14 Total: -52.56 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.18 Total: -16.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.49 -9.30 -44.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997183918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.439 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds