Wall clock time and date at job start Wed Apr 1 2020 03:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46869 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99351 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21555 * 120.00395 * 0.02562 * 5 4 2 7 7 C 1.47865 * 120.00031 * 180.02562 * 5 4 2 8 8 C 1.39702 * 120.07194 * 359.72696 * 7 5 4 9 9 C 1.38059 * 120.14243 * 179.72086 * 8 7 5 10 10 C 1.38096 * 120.29605 * 0.55525 * 9 8 7 11 11 C 1.39665 * 120.14506 * 359.72149 * 10 9 8 12 12 C 1.47864 * 120.07257 * 180.02562 * 11 10 9 13 13 N 1.34778 * 120.00007 * 359.97438 * 12 11 10 14 14 O 1.21554 * 119.99883 * 179.97438 * 12 11 10 15 15 C 1.39297 * 120.07226 * 180.02562 * 7 5 4 16 16 C 1.52997 * 109.47441 * 239.99838 * 2 1 3 17 17 C 1.53041 * 109.46332 * 180.02562 * 16 2 1 18 18 C 1.53190 * 109.31361 * 178.60104 * 17 16 2 19 19 N 1.46924 * 108.76422 * 54.65229 * 18 17 16 20 20 C 1.36938 * 120.62707 * 126.40600 * 19 18 17 21 21 H 1.07997 * 120.00548 * 331.82331 * 20 19 18 22 22 C 1.38818 * 119.99900 * 151.82191 * 20 19 18 23 23 N 1.31619 * 119.99776 * 343.07628 * 22 20 19 24 24 Si 1.86794 * 120.00037 * 163.07248 * 22 20 19 25 25 H 1.48504 * 109.47271 * 90.00439 * 24 22 20 26 26 H 1.48498 * 109.47246 * 210.00631 * 24 22 20 27 27 H 1.48500 * 109.47104 * 330.00259 * 24 22 20 28 28 C 1.46921 * 118.74105 * 306.38135 * 19 18 17 29 29 C 1.53043 * 109.45889 * 59.96913 * 16 2 1 30 30 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47535 * 60.00571 * 1 2 3 32 32 H 1.09002 * 109.47304 * 299.99807 * 1 2 3 33 33 H 0.97002 * 119.99587 * 95.00574 * 4 2 1 34 34 H 1.08001 * 119.92835 * 359.97438 * 8 7 5 35 35 H 1.07998 * 119.85094 * 180.27730 * 9 8 7 36 36 H 1.08006 * 119.92787 * 179.69772 * 10 9 8 37 37 H 0.96994 * 119.99844 * 359.97438 * 13 12 11 38 38 H 0.96994 * 119.99557 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.14903 * 359.97438 * 15 7 5 40 40 H 1.08998 * 109.45946 * 299.99944 * 16 2 1 41 41 H 1.09006 * 109.49033 * 298.56713 * 17 16 2 42 42 H 1.09004 * 109.49907 * 58.65693 * 17 16 2 43 43 H 1.09003 * 109.59716 * 294.86739 * 18 17 16 44 44 H 1.08999 * 109.70155 * 174.50222 * 18 17 16 45 45 H 0.97000 * 119.99690 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.59222 * 293.82594 * 28 19 18 47 47 H 1.09006 * 109.70406 * 173.46617 * 28 19 18 48 48 H 1.08996 * 109.49606 * 301.33993 * 29 16 2 49 49 H 1.08999 * 109.49655 * 61.40257 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8575 1.1612 2.4118 7 6 2.6405 -0.7149 3.5644 8 6 2.9683 -2.0716 3.5047 9 6 3.4345 -2.7222 4.6296 10 6 3.5693 -2.0406 5.8230 11 6 3.2397 -0.6855 5.8979 12 6 3.3852 0.0429 7.1764 13 7 3.8358 -0.6010 8.2713 14 8 3.0984 1.2224 7.2400 15 6 2.7736 -0.0215 4.7651 16 6 2.0401 -0.7213 -1.2492 17 6 3.5705 -0.7217 -1.2486 18 6 4.0774 -1.4748 -2.4825 19 7 3.4748 -0.8771 -3.6817 20 6 4.2607 -0.4516 -4.7193 21 1 5.2718 -0.1221 -4.5310 22 6 3.7578 -0.4439 -6.0131 23 7 2.6779 -1.1381 -6.3035 24 14 4.6135 0.5517 -7.3419 25 1 5.6370 -0.2914 -8.0104 26 1 3.6140 1.0038 -8.3427 27 1 5.2699 1.7344 -6.7289 28 6 2.0130 -0.7449 -3.7468 29 6 1.5292 -0.0001 -2.4986 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 1.1527 34 1 2.8605 -2.6116 2.5757 35 1 3.6908 -3.7701 4.5770 36 1 3.9301 -2.5567 6.7005 37 1 4.0643 -1.5423 8.2207 38 1 3.9309 -0.1233 9.1101 39 1 2.5174 1.0264 4.8177 40 1 1.6767 -1.7489 -1.2490 41 1 3.9344 0.3055 -1.2740 42 1 3.9338 -1.2146 -0.3469 43 1 3.7905 -2.5242 -2.4137 44 1 5.1629 -1.3959 -2.5409 45 1 2.3263 -1.1324 -7.2075 46 1 1.5577 -1.7347 -3.7811 47 1 1.7341 -0.1833 -4.6385 48 1 0.4395 0.0205 -2.4867 49 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997183918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:51 Heat of formation + Delta-G solvation = -62.336278 kcal Electronic energy + Delta-G solvation = -29808.812433 eV Core-core repulsion = 25734.574028 eV Total energy + Delta-G solvation = -4074.238405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.61443 -40.77804 -39.58090 -38.73889 -36.83156 -35.00094 -34.56581 -33.20723 -32.10552 -31.97676 -31.35781 -30.30538 -27.16586 -25.57557 -25.24195 -24.09456 -23.60291 -22.33219 -21.86859 -21.29719 -20.63657 -19.56167 -18.67928 -18.11029 -17.64760 -17.25475 -16.99619 -16.74341 -16.19244 -15.89114 -15.81056 -15.55632 -15.43263 -15.30379 -14.88324 -14.81164 -14.78363 -14.71789 -14.35481 -14.00693 -13.63468 -13.42312 -13.36481 -12.98492 -12.90718 -12.74638 -12.61161 -12.45561 -12.39981 -12.16250 -12.01683 -11.77928 -11.48969 -11.34574 -11.26054 -11.08155 -10.94053 -10.78955 -10.51880 -10.27243 -10.08762 -9.96531 -8.64348 -7.86542 -5.30594 -0.39957 -0.02295 1.44957 1.47419 1.53304 1.56485 2.02904 2.04757 2.48783 2.51516 2.85212 3.27661 3.56340 3.69086 3.74196 3.77581 3.82984 3.96720 4.04291 4.08103 4.10749 4.36013 4.41132 4.47285 4.57112 4.57975 4.61630 4.75202 4.80908 4.89075 4.91948 4.99700 5.04998 5.11413 5.16356 5.19288 5.20676 5.26735 5.29635 5.37847 5.45390 5.49998 5.57325 5.67443 5.71431 5.82146 5.84150 6.38281 6.41331 6.51744 7.17467 7.17544 7.24931 7.90185 8.40122 9.19276 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.002006 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.682068 B =13957.987399 C =14220.794307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.060 0.940 4 N -0.699 5.699 5 C 0.553 3.447 6 O -0.585 6.585 7 C -0.156 4.156 8 C -0.051 4.051 9 C -0.120 4.120 10 C -0.044 4.044 11 C -0.161 4.161 12 C 0.559 3.441 13 N -0.823 5.823 14 O -0.594 6.594 15 C -0.029 4.029 16 C -0.071 4.071 17 C -0.114 4.114 18 C 0.142 3.858 19 N -0.613 5.613 20 C -0.261 4.261 21 H 0.061 0.939 22 C -0.050 4.050 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.275 1.275 28 C 0.178 3.822 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.414 0.586 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.420 0.580 38 H 0.414 0.586 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.048 0.952 45 H 0.250 0.750 46 H 0.004 0.996 47 H 0.049 0.951 48 H 0.076 0.924 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -10.413 28.731 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.078 0.922 4 N -0.351 5.351 5 C 0.342 3.658 6 O -0.466 6.466 7 C -0.159 4.159 8 C -0.070 4.070 9 C -0.138 4.138 10 C -0.062 4.062 11 C -0.164 4.164 12 C 0.345 3.655 13 N -0.388 5.388 14 O -0.476 6.476 15 C -0.049 4.049 16 C -0.090 4.090 17 C -0.153 4.153 18 C 0.017 3.983 19 N -0.336 5.336 20 C -0.392 4.392 21 H 0.079 0.921 22 C -0.246 4.246 23 N -0.578 5.578 24 Si 0.790 3.210 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.200 1.200 28 C 0.052 3.948 29 C -0.162 4.162 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.253 0.747 34 H 0.177 0.823 35 H 0.199 0.801 36 H 0.194 0.806 37 H 0.253 0.747 38 H 0.246 0.754 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.022 0.978 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.046 -8.898 28.475 29.833 hybrid contribution 0.450 0.506 -1.006 1.213 sum 0.404 -8.392 27.469 28.725 Atomic orbital electron populations 1.22153 0.94329 1.03088 1.01997 1.20899 0.94539 0.96222 0.83333 0.92162 1.45834 1.66160 1.14587 1.08540 1.18630 0.77084 0.86072 0.84023 1.90775 1.52371 1.17801 1.85677 1.19810 1.07101 0.96030 0.92927 1.21935 0.92568 0.91373 1.01109 1.21597 0.98675 1.02476 0.91021 1.21967 0.93047 0.90938 1.00268 1.19842 1.07384 0.96143 0.93064 1.18469 0.76007 0.85848 0.85161 1.43503 1.67583 1.16050 1.11685 1.90837 1.52404 1.18201 1.86108 1.21223 0.92597 0.99745 0.91329 1.21187 0.95571 0.99888 0.92363 1.21907 0.95171 1.00071 0.98154 1.21056 0.96332 0.94493 0.86461 1.44326 1.02497 1.70582 1.16221 1.19451 0.97439 1.35650 0.86627 0.92138 1.25733 0.99402 1.00404 0.99025 1.70161 1.25949 1.42373 1.19306 0.85364 0.77583 0.78928 0.79103 1.20990 1.21828 1.20043 1.20577 0.82876 0.95965 0.95373 1.22078 1.00193 0.98745 0.95196 0.90652 0.90921 0.93627 0.74731 0.82259 0.80124 0.80578 0.74683 0.75372 0.87299 0.89628 0.94283 0.89831 0.95788 0.93368 0.94134 0.97838 0.93244 0.90536 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 9.13 71.98 0.66 -3.16 16 2 C 0.15 4.10 2.16 44.99 0.10 4.20 16 3 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 4 N -0.70 -15.22 4.31 -445.39 -1.92 -17.14 16 5 C 0.55 14.87 7.74 86.79 0.67 15.54 16 6 O -0.59 -21.58 16.00 -3.89 -0.06 -21.65 16 7 C -0.16 -3.19 5.87 -20.12 -0.12 -3.31 16 8 C -0.05 -0.55 9.54 22.58 0.22 -0.33 16 9 C -0.12 -0.62 10.02 22.19 0.22 -0.40 16 10 C -0.04 -0.27 9.54 22.58 0.22 -0.06 16 11 C -0.16 -2.63 5.87 -20.12 -0.12 -2.75 16 12 C 0.56 10.28 8.05 86.79 0.70 10.98 16 13 N -0.82 -5.44 8.82 -175.59 -1.55 -6.99 16 14 O -0.59 -17.78 17.18 -3.89 -0.07 -17.84 16 15 C -0.03 -0.68 9.14 22.79 0.21 -0.47 16 16 C -0.07 -2.04 1.79 -10.77 -0.02 -2.06 16 17 C -0.11 -3.55 5.22 30.67 0.16 -3.39 16 18 C 0.14 5.56 6.52 86.36 0.56 6.12 16 19 N -0.61 -30.31 2.99 -699.10 -2.09 -32.40 16 20 C -0.26 -14.45 9.58 84.03 0.81 -13.65 16 21 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 22 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 23 N -0.93 -54.83 11.19 21.65 0.24 -54.59 16 24 Si 0.96 45.33 29.59 68.60 2.03 47.36 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 28 C 0.18 8.33 5.30 86.36 0.46 8.79 16 29 C -0.12 -4.40 5.04 30.67 0.15 -4.25 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.76 6.40 -2.39 -0.02 1.75 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.41 6.04 6.41 -92.71 -0.59 5.44 16 34 H 0.16 0.83 6.39 -2.91 -0.02 0.81 16 35 H 0.18 -0.46 8.06 -2.91 -0.02 -0.49 16 36 H 0.18 -0.59 6.39 -2.91 -0.02 -0.60 16 37 H 0.42 -0.72 6.85 -92.71 -0.64 -1.35 16 38 H 0.41 2.02 8.93 -92.71 -0.83 1.19 16 39 H 0.11 3.41 7.23 -2.91 -0.02 3.39 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.08 2.01 7.41 -2.38 -0.02 1.99 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 47 H 0.05 2.68 6.07 -2.38 -0.01 2.67 16 48 H 0.08 2.40 6.36 -2.39 -0.02 2.38 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -85.34 392.00 0.82 -84.52 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -1.05 Total: 9.34 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.29 Total: 9.39 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -5.32 Total: -111.12 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.13 Total: -39.49 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -85.34 0.82 -84.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997183918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.182 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds