Wall clock time and date at job start Wed Apr 1 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 N 1.46505 * 109.47168 * 119.99979 * 2 1 3 5 5 C 1.34778 * 119.99871 * 275.00492 * 4 2 1 6 6 O 1.21527 * 120.00253 * 0.26954 * 5 4 2 7 7 C 1.48037 * 119.99631 * 180.02562 * 5 4 2 8 8 C 1.39558 * 120.00194 * 359.71822 * 7 5 4 9 9 C 1.37815 * 119.99883 * 179.76757 * 8 7 5 10 10 C 1.39554 * 120.00221 * 0.51375 * 9 8 7 11 11 C 1.48029 * 120.00568 * 179.71808 * 10 9 8 12 12 N 1.34780 * 119.99798 * 0.02562 * 11 10 9 13 13 O 1.21521 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.39558 * 119.99764 * 359.74141 * 10 9 8 15 15 C 1.37823 * 119.99947 * 0.02562 * 14 10 9 16 16 C 1.52997 * 109.47405 * 240.00366 * 2 1 3 17 17 C 1.53048 * 109.46158 * 180.02562 * 16 2 1 18 18 C 1.53194 * 109.31368 * 178.59879 * 17 16 2 19 19 N 1.46925 * 108.76292 * 54.65547 * 18 17 16 20 20 C 1.36931 * 120.62881 * 126.40597 * 19 18 17 21 21 H 1.07997 * 120.00166 * 331.82904 * 20 19 18 22 22 C 1.38814 * 120.00000 * 151.82411 * 20 19 18 23 23 N 1.31614 * 119.99979 * 343.07216 * 22 20 19 24 24 Si 1.86802 * 120.00191 * 163.06688 * 22 20 19 25 25 H 1.48504 * 109.46865 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47014 * 120.00078 * 24 22 20 27 27 H 1.48494 * 109.47228 * 240.00688 * 24 22 20 28 28 C 1.46934 * 118.73848 * 306.38352 * 19 18 17 29 29 C 1.53036 * 109.46213 * 59.97156 * 16 2 1 30 30 H 1.09007 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47524 * 299.99649 * 1 2 3 32 32 H 1.09001 * 109.47558 * 60.00295 * 1 2 3 33 33 H 0.96991 * 119.99734 * 95.00572 * 4 2 1 34 34 H 1.08001 * 119.99794 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.00043 * 180.25472 * 9 8 7 36 36 H 0.97003 * 119.99742 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00179 * 179.97438 * 12 11 10 38 38 H 1.08006 * 120.00033 * 179.97438 * 14 10 9 39 39 H 1.07997 * 119.99717 * 179.97438 * 15 14 10 40 40 H 1.09007 * 109.45907 * 299.99551 * 16 2 1 41 41 H 1.08998 * 109.49348 * 298.56529 * 17 16 2 42 42 H 1.09006 * 109.49445 * 58.65884 * 17 16 2 43 43 H 1.09004 * 109.59381 * 294.86866 * 18 17 16 44 44 H 1.08995 * 109.70080 * 174.50470 * 18 17 16 45 45 H 0.97003 * 119.99957 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.58110 * 293.81967 * 28 19 18 47 47 H 1.08996 * 109.69591 * 173.46976 * 28 19 18 48 48 H 1.09002 * 109.49588 * 301.33413 * 29 16 2 49 49 H 1.09001 * 109.50144 * 61.40238 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8532 1.1597 2.4130 7 6 2.6409 -0.7160 3.5657 8 6 2.9679 -2.0714 3.5044 9 6 3.4323 -2.7197 4.6283 10 6 3.5655 -2.0236 5.8305 11 6 4.0585 -2.7215 7.0393 12 7 4.3791 -4.0292 6.9787 13 8 4.1740 -2.1154 8.0862 14 6 3.2335 -0.6696 5.8932 15 6 2.7736 -0.0200 4.7680 16 6 2.0400 -0.7211 -1.2492 17 6 3.5705 -0.7215 -1.2486 18 6 4.0775 -1.4747 -2.4826 19 7 3.4749 -0.8767 -3.6818 20 6 4.2608 -0.4512 -4.7192 21 1 5.2719 -0.1218 -4.5309 22 6 3.7579 -0.4434 -6.0131 23 7 2.6781 -1.1375 -6.3036 24 14 4.6136 0.5525 -7.3418 25 1 5.7968 1.2378 -6.7621 26 1 5.0524 -0.3530 -8.4338 27 1 3.6724 1.5642 -7.8856 28 6 2.0130 -0.7445 -3.7469 29 6 1.5292 0.0001 -2.4986 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 2.8608 -2.6111 2.5750 35 1 3.6892 -3.7676 4.5798 36 1 4.2872 -4.5129 6.1429 37 1 4.7025 -4.4865 7.7707 38 1 3.3362 -0.1309 6.8237 39 1 2.5163 1.0278 4.8166 40 1 1.6766 -1.7489 -1.2491 41 1 3.9345 0.3056 -1.2740 42 1 3.9338 -1.2146 -0.3469 43 1 3.7905 -2.5240 -2.4138 44 1 5.1630 -1.3957 -2.5409 45 1 2.3265 -1.1317 -7.2077 46 1 1.5578 -1.7344 -3.7814 47 1 1.7342 -0.1829 -4.6385 48 1 0.4395 0.0206 -2.4868 49 1 1.9122 1.0205 -2.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997418979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:57 Heat of formation + Delta-G solvation = -37.051528 kcal Electronic energy + Delta-G solvation = -29716.701007 eV Core-core repulsion = 25643.559031 eV Total energy + Delta-G solvation = -4073.141976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.82702 -39.96586 -38.48984 -37.69305 -35.42652 -34.37064 -33.13757 -31.99669 -31.35271 -30.93942 -29.72042 -29.05320 -25.72223 -25.22271 -23.31813 -22.90375 -22.09366 -21.68372 -20.67736 -20.39981 -19.25127 -18.81835 -17.84692 -17.23670 -16.74962 -16.23325 -15.55629 -15.38340 -15.23217 -14.95328 -14.82807 -14.70039 -14.14921 -14.01603 -13.92916 -13.62238 -13.45265 -13.35768 -13.00632 -12.82684 -12.79591 -12.37290 -12.25678 -11.85942 -11.61603 -11.40118 -11.16342 -11.01336 -10.74318 -10.61886 -10.45694 -10.25626 -10.23977 -10.19292 -10.10329 -9.91447 -9.59226 -9.52617 -9.49800 -9.46385 -9.02423 -8.48986 -6.68593 -5.80878 -3.23125 0.03076 0.85563 2.09612 2.87054 2.94457 3.00084 3.35752 3.44030 3.46166 3.51601 4.16806 4.21868 4.40107 4.48268 4.54703 4.80024 4.88705 4.92935 5.15667 5.18372 5.30069 5.36200 5.44483 5.49120 5.62734 5.65470 5.68824 5.77898 5.82176 5.85801 5.91676 6.04647 6.13737 6.22285 6.23322 6.29353 6.29715 6.40877 6.47161 6.58385 6.68319 6.73722 6.77817 6.81487 6.95727 7.33306 7.40956 7.63797 7.71604 7.78470 8.06661 8.43627 9.19990 9.83414 10.39911 11.27570 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.002020 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.608898 B =13856.774892 C =14547.027667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.553 3.447 6 O -0.533 6.533 7 C -0.101 4.101 8 C -0.094 4.094 9 C -0.093 4.093 10 C -0.121 4.121 11 C 0.563 3.437 12 N -0.850 5.850 13 O -0.537 6.537 14 C -0.066 4.066 15 C -0.069 4.069 16 C -0.084 4.084 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.172 3.828 29 C -0.134 4.134 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.402 0.598 37 H 0.406 0.594 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.054 0.946 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -6.544 22.804 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.106 0.894 4 N -0.363 5.363 5 C 0.339 3.661 6 O -0.411 6.411 7 C -0.105 4.105 8 C -0.113 4.113 9 C -0.111 4.111 10 C -0.124 4.124 11 C 0.349 3.651 12 N -0.414 5.414 13 O -0.414 6.414 14 C -0.085 4.085 15 C -0.088 4.088 16 C -0.103 4.103 17 C -0.165 4.165 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.215 1.215 28 C 0.046 3.954 29 C -0.173 4.173 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.232 0.768 37 H 0.238 0.762 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.106 0.894 48 H 0.073 0.927 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.867 -5.171 23.224 23.865 hybrid contribution 0.592 -0.598 -0.924 1.250 sum -1.275 -5.769 22.300 23.069 Atomic orbital electron populations 1.22205 0.95361 1.02013 1.02488 1.21232 0.93838 0.97659 0.83260 0.89409 1.46078 1.66444 1.14041 1.09695 1.18262 0.78107 0.86599 0.83126 1.90781 1.49955 1.15493 1.84861 1.20295 1.01188 0.94272 0.94703 1.21289 0.97610 0.93520 0.98879 1.21198 0.98308 0.99846 0.91771 1.20055 1.03516 0.95275 0.93578 1.18323 0.76699 0.82048 0.88037 1.43761 1.69834 1.11089 1.16707 1.90828 1.53285 1.66180 1.31100 1.21290 0.95119 0.92937 0.99137 1.21324 0.95741 1.01055 0.90632 1.21343 0.96440 0.99274 0.93231 1.22052 0.94479 1.01459 0.98547 1.20884 0.96561 0.93841 0.86773 1.44057 1.02056 1.69866 1.15533 1.19217 0.97234 1.35991 0.85574 0.91748 1.25041 0.98438 0.99168 0.97073 1.70034 1.24601 1.40951 1.19188 0.86245 0.78981 0.79826 0.81869 1.20266 1.21762 1.21540 1.20763 0.83265 0.96806 0.94584 1.22269 0.98897 1.00123 0.96058 0.92620 0.92667 0.90829 0.76651 0.84675 0.84930 0.76796 0.76240 0.83876 0.83712 0.91473 0.92282 0.93485 0.96704 0.92950 0.93709 0.96507 0.89447 0.92741 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.13 37.15 0.34 -1.63 16 2 C 0.14 1.88 2.15 -67.93 -0.15 1.74 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -7.86 4.31 -54.69 -0.24 -8.10 16 5 C 0.55 6.84 7.74 -12.24 -0.09 6.74 16 6 O -0.53 -8.53 16.00 5.34 0.09 -8.44 16 7 C -0.10 -0.99 5.88 -104.90 -0.62 -1.61 16 8 C -0.09 -0.66 9.53 -39.24 -0.37 -1.04 16 9 C -0.09 -0.55 9.53 -39.25 -0.37 -0.92 16 10 C -0.12 -0.96 5.88 -104.90 -0.62 -1.58 16 11 C 0.56 4.74 8.05 -12.24 -0.10 4.65 16 12 N -0.85 -3.57 8.82 30.57 0.27 -3.30 16 13 O -0.54 -6.67 17.17 5.35 0.09 -6.57 16 14 C -0.07 -0.59 9.58 -39.24 -0.38 -0.96 16 15 C -0.07 -0.66 9.58 -39.24 -0.38 -1.03 16 16 C -0.08 -1.24 1.79 -90.58 -0.16 -1.40 16 17 C -0.13 -2.01 5.22 -26.61 -0.14 -2.15 16 18 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 19 N -0.59 -14.33 2.99 -172.32 -0.52 -14.85 16 20 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 21 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 22 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 23 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 24 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.17 3.90 5.30 -3.71 -0.02 3.88 16 29 C -0.13 -2.36 5.04 -26.62 -0.13 -2.49 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.89 6.40 -51.93 -0.33 0.56 16 33 H 0.40 3.41 6.41 -40.82 -0.26 3.14 16 34 H 0.14 0.66 6.39 -52.49 -0.34 0.32 16 35 H 0.13 0.32 6.39 -52.49 -0.34 -0.02 16 36 H 0.40 0.57 6.85 -40.82 -0.28 0.29 16 37 H 0.41 1.25 8.93 -40.82 -0.36 0.89 16 38 H 0.14 1.22 7.64 -52.48 -0.40 0.82 16 39 H 0.15 1.40 7.64 -52.49 -0.40 1.00 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 48 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -34.46 391.99 -9.30 -43.76 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.05 Total: 2.16 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -3.44 Total: -1.89 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.14 Total: -51.37 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.18 Total: -15.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.46 -9.30 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997418979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.705 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds