Wall clock time and date at job start Wed Apr 1 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 N 1.46505 * 109.47168 * 119.99979 * 2 1 3 5 5 C 1.34778 * 119.99871 * 275.00492 * 4 2 1 6 6 O 1.21527 * 120.00253 * 0.26954 * 5 4 2 7 7 C 1.48037 * 119.99631 * 180.02562 * 5 4 2 8 8 C 1.39558 * 120.00194 * 359.71822 * 7 5 4 9 9 C 1.37815 * 119.99883 * 179.76757 * 8 7 5 10 10 C 1.39554 * 120.00221 * 0.51375 * 9 8 7 11 11 C 1.48029 * 120.00568 * 179.71808 * 10 9 8 12 12 N 1.34780 * 119.99798 * 0.02562 * 11 10 9 13 13 O 1.21521 * 120.00252 * 180.02562 * 11 10 9 14 14 C 1.39558 * 119.99764 * 359.74141 * 10 9 8 15 15 C 1.37823 * 119.99947 * 0.02562 * 14 10 9 16 16 C 1.52997 * 109.47405 * 240.00366 * 2 1 3 17 17 C 1.53048 * 109.46158 * 180.02562 * 16 2 1 18 18 C 1.53194 * 109.31368 * 178.59879 * 17 16 2 19 19 N 1.46925 * 108.76292 * 54.65547 * 18 17 16 20 20 C 1.36931 * 120.62881 * 126.40597 * 19 18 17 21 21 H 1.07997 * 120.00166 * 331.82904 * 20 19 18 22 22 C 1.38814 * 120.00000 * 151.82411 * 20 19 18 23 23 N 1.31614 * 119.99979 * 343.07216 * 22 20 19 24 24 Si 1.86802 * 120.00191 * 163.06688 * 22 20 19 25 25 H 1.48504 * 109.46865 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47014 * 120.00078 * 24 22 20 27 27 H 1.48494 * 109.47228 * 240.00688 * 24 22 20 28 28 C 1.46934 * 118.73848 * 306.38352 * 19 18 17 29 29 C 1.53036 * 109.46213 * 59.97156 * 16 2 1 30 30 H 1.09007 * 109.46740 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47524 * 299.99649 * 1 2 3 32 32 H 1.09001 * 109.47558 * 60.00295 * 1 2 3 33 33 H 0.96991 * 119.99734 * 95.00572 * 4 2 1 34 34 H 1.08001 * 119.99794 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.00043 * 180.25472 * 9 8 7 36 36 H 0.97003 * 119.99742 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00179 * 179.97438 * 12 11 10 38 38 H 1.08006 * 120.00033 * 179.97438 * 14 10 9 39 39 H 1.07997 * 119.99717 * 179.97438 * 15 14 10 40 40 H 1.09007 * 109.45907 * 299.99551 * 16 2 1 41 41 H 1.08998 * 109.49348 * 298.56529 * 17 16 2 42 42 H 1.09006 * 109.49445 * 58.65884 * 17 16 2 43 43 H 1.09004 * 109.59381 * 294.86866 * 18 17 16 44 44 H 1.08995 * 109.70080 * 174.50470 * 18 17 16 45 45 H 0.97003 * 119.99957 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.58110 * 293.81967 * 28 19 18 47 47 H 1.08996 * 109.69591 * 173.46976 * 28 19 18 48 48 H 1.09002 * 109.49588 * 301.33413 * 29 16 2 49 49 H 1.09001 * 109.50144 * 61.40238 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8532 1.1597 2.4130 7 6 2.6409 -0.7160 3.5657 8 6 2.9679 -2.0714 3.5044 9 6 3.4323 -2.7197 4.6283 10 6 3.5655 -2.0236 5.8305 11 6 4.0585 -2.7215 7.0393 12 7 4.3791 -4.0292 6.9787 13 8 4.1740 -2.1154 8.0862 14 6 3.2335 -0.6696 5.8932 15 6 2.7736 -0.0200 4.7680 16 6 2.0400 -0.7211 -1.2492 17 6 3.5705 -0.7215 -1.2486 18 6 4.0775 -1.4747 -2.4826 19 7 3.4749 -0.8767 -3.6818 20 6 4.2608 -0.4512 -4.7192 21 1 5.2719 -0.1218 -4.5309 22 6 3.7579 -0.4434 -6.0131 23 7 2.6781 -1.1375 -6.3036 24 14 4.6136 0.5525 -7.3418 25 1 5.7968 1.2378 -6.7621 26 1 5.0524 -0.3530 -8.4338 27 1 3.6724 1.5642 -7.8856 28 6 2.0130 -0.7445 -3.7469 29 6 1.5292 0.0001 -2.4986 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 2.8608 -2.6111 2.5750 35 1 3.6892 -3.7676 4.5798 36 1 4.2872 -4.5129 6.1429 37 1 4.7025 -4.4865 7.7707 38 1 3.3362 -0.1309 6.8237 39 1 2.5163 1.0278 4.8166 40 1 1.6766 -1.7489 -1.2491 41 1 3.9345 0.3056 -1.2740 42 1 3.9338 -1.2146 -0.3469 43 1 3.7905 -2.5240 -2.4138 44 1 5.1630 -1.3957 -2.5409 45 1 2.3265 -1.1317 -7.2077 46 1 1.5578 -1.7344 -3.7814 47 1 1.7342 -0.1829 -4.6385 48 1 0.4395 0.0206 -2.4868 49 1 1.9122 1.0205 -2.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997418979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:55 Heat of formation + Delta-G solvation = -61.295197 kcal Electronic energy + Delta-G solvation = -29717.752292 eV Core-core repulsion = 25643.559031 eV Total energy + Delta-G solvation = -4074.193261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.59698 -40.80164 -39.59328 -38.70412 -36.81857 -34.94410 -34.59378 -33.25913 -32.07847 -31.92909 -31.35210 -30.32236 -27.16712 -26.26650 -24.58778 -23.67774 -23.58717 -22.64027 -21.78753 -21.28487 -20.67307 -19.47218 -18.81851 -18.41957 -17.85827 -17.21341 -16.83132 -16.24061 -16.14476 -15.92809 -15.80494 -15.71793 -15.37634 -15.29095 -14.86867 -14.80762 -14.74336 -14.55177 -14.30657 -13.99495 -13.68252 -13.53350 -13.40440 -13.34435 -12.91606 -12.71452 -12.63111 -12.39618 -12.18312 -12.12585 -11.98768 -11.76923 -11.46821 -11.37608 -11.23963 -11.06435 -10.93309 -10.76341 -10.52349 -10.26023 -10.10819 -9.96665 -8.64087 -7.86179 -5.30348 -0.64002 0.27851 1.37583 1.44932 1.47825 1.57315 2.06932 2.10519 2.45383 2.51714 2.83913 3.27993 3.53977 3.67620 3.72216 3.77329 3.85465 3.95301 3.98884 4.09427 4.22169 4.30339 4.43290 4.49452 4.58298 4.59050 4.62837 4.76756 4.82762 4.89302 4.93586 5.01301 5.06545 5.08118 5.14034 5.19726 5.21241 5.24633 5.31410 5.39611 5.47340 5.51415 5.58536 5.66837 5.68487 5.83407 5.84656 6.37896 6.41834 6.52573 7.17521 7.17962 7.24197 7.90805 8.40441 9.19625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.002020 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.608898 B =13856.774892 C =14547.027667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.063 0.937 4 N -0.699 5.699 5 C 0.553 3.447 6 O -0.578 6.578 7 C -0.116 4.116 8 C -0.085 4.085 9 C -0.076 4.076 10 C -0.124 4.124 11 C 0.560 3.440 12 N -0.825 5.825 13 O -0.586 6.586 14 C -0.077 4.077 15 C -0.080 4.080 16 C -0.072 4.072 17 C -0.114 4.114 18 C 0.141 3.859 19 N -0.613 5.613 20 C -0.259 4.259 21 H 0.061 0.939 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.961 3.039 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.177 3.823 29 C -0.122 4.122 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.419 0.581 37 H 0.414 0.586 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.003 0.997 47 H 0.048 0.952 48 H 0.076 0.924 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -8.963 23.913 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.081 0.919 4 N -0.351 5.351 5 C 0.341 3.659 6 O -0.459 6.459 7 C -0.119 4.119 8 C -0.103 4.103 9 C -0.095 4.095 10 C -0.128 4.128 11 C 0.346 3.654 12 N -0.390 5.390 13 O -0.468 6.468 14 C -0.096 4.096 15 C -0.099 4.099 16 C -0.091 4.091 17 C -0.153 4.153 18 C 0.016 3.984 19 N -0.337 5.337 20 C -0.389 4.389 21 H 0.079 0.921 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.790 3.210 25 H -0.194 1.194 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.052 3.948 29 C -0.162 4.162 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.253 0.747 34 H 0.183 0.817 35 H 0.195 0.805 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.021 0.979 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.415 -7.667 24.337 25.556 hybrid contribution 0.500 0.066 -1.228 1.327 sum -0.916 -7.601 23.110 24.345 Atomic orbital electron populations 1.22157 0.94323 1.03056 1.02082 1.20896 0.94512 0.96285 0.83226 0.91864 1.45872 1.65953 1.14655 1.08637 1.18636 0.77248 0.86108 0.83890 1.90764 1.51956 1.17580 1.85566 1.20157 1.02841 0.95615 0.93320 1.21602 0.96118 0.92129 1.00450 1.21610 0.96193 1.01590 0.90073 1.20173 1.03261 0.94891 0.94441 1.18447 0.76474 0.83047 0.87414 1.43587 1.67806 1.09634 1.17963 1.90812 1.55675 1.67506 1.32758 1.21262 0.95843 0.93859 0.98648 1.21240 0.96667 1.00763 0.91236 1.21193 0.95561 0.99885 0.92451 1.21908 0.95165 1.00127 0.98085 1.21063 0.96317 0.94494 0.86527 1.44344 1.02510 1.70565 1.16243 1.19491 0.97416 1.35432 0.86609 0.92090 1.25727 0.99416 1.00431 0.99028 1.70166 1.26007 1.42421 1.19263 0.85300 0.78115 0.78296 0.79311 1.19424 1.21838 1.21782 1.20581 0.82860 0.95947 0.95456 1.22070 1.00183 0.98776 0.95153 0.90793 0.93362 0.91015 0.74728 0.81682 0.80531 0.74786 0.75301 0.84614 0.85033 0.89729 0.94135 0.89741 0.95869 0.93418 0.94159 0.97935 0.93306 0.90556 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.13 71.98 0.66 -2.83 16 2 C 0.16 3.75 2.15 44.99 0.10 3.85 16 3 H 0.06 1.90 7.58 -2.39 -0.02 1.88 16 4 N -0.70 -13.41 4.31 -445.23 -1.92 -15.33 16 5 C 0.55 12.88 7.74 86.84 0.67 13.56 16 6 O -0.58 -18.60 16.00 -3.80 -0.06 -18.66 16 7 C -0.12 -2.05 5.88 -20.04 -0.12 -2.17 16 8 C -0.08 -0.83 9.53 22.49 0.21 -0.62 16 9 C -0.08 -0.56 9.53 22.49 0.21 -0.35 16 10 C -0.12 -1.69 5.88 -20.04 -0.12 -1.81 16 11 C 0.56 8.37 8.05 86.84 0.70 9.07 16 12 N -0.83 -4.18 8.82 -175.48 -1.55 -5.73 16 13 O -0.59 -14.39 17.17 -3.78 -0.06 -14.46 16 14 C -0.08 -1.35 9.58 22.49 0.22 -1.13 16 15 C -0.08 -1.53 9.58 22.49 0.22 -1.32 16 16 C -0.07 -1.95 1.79 -10.77 -0.02 -1.97 16 17 C -0.11 -3.36 5.22 30.68 0.16 -3.20 16 18 C 0.14 5.38 6.52 86.36 0.56 5.94 16 19 N -0.61 -29.72 2.99 -699.09 -2.09 -31.82 16 20 C -0.26 -14.11 9.58 84.04 0.81 -13.31 16 21 H 0.06 3.29 7.88 -2.91 -0.02 3.26 16 22 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 23 N -0.93 -54.33 11.19 21.65 0.24 -54.08 16 24 Si 0.96 44.80 29.59 68.60 2.03 46.83 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 C 0.18 8.13 5.30 86.36 0.46 8.59 16 29 C -0.12 -4.22 5.04 30.67 0.15 -4.06 16 30 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.61 6.40 -2.39 -0.02 1.59 16 33 H 0.41 5.15 6.41 -92.71 -0.59 4.55 16 34 H 0.17 0.61 6.39 -2.91 -0.02 0.59 16 35 H 0.18 -0.31 6.39 -2.91 -0.02 -0.33 16 36 H 0.42 -0.81 6.85 -92.71 -0.64 -1.45 16 37 H 0.41 1.35 8.93 -92.71 -0.83 0.52 16 38 H 0.14 2.48 7.64 -2.91 -0.02 2.46 16 39 H 0.13 2.76 7.64 -2.91 -0.02 2.74 16 40 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.88 7.41 -2.38 -0.02 1.86 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 45 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.05 2.61 6.06 -2.39 -0.01 2.59 16 48 H 0.08 2.29 6.36 -2.39 -0.02 2.27 16 49 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -79.19 391.99 0.83 -78.37 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -1.05 Total: 9.03 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.29 Total: 5.85 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -5.32 Total: -106.96 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -0.13 Total: -33.12 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -79.19 0.83 -78.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997418979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.070 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds