Wall clock time and date at job start Wed Apr 1 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46806 * 2 1 4 4 N 1.46497 * 109.47030 * 119.99377 * 2 1 3 5 5 C 1.34768 * 120.00287 * 275.00443 * 4 2 1 6 6 O 1.21554 * 120.00506 * 359.97438 * 5 4 2 7 7 C 1.47869 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.39700 * 120.07294 * 0.02562 * 7 5 4 9 9 C 1.38054 * 120.14526 * 180.02562 * 8 7 5 10 10 C 1.38099 * 120.29720 * 359.94889 * 9 8 7 11 11 C 1.39668 * 120.14489 * 0.03018 * 10 9 8 12 12 C 1.47855 * 120.07330 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99917 * 359.97438 * 12 11 10 14 14 O 1.21550 * 120.00136 * 180.02562 * 12 11 10 15 15 C 1.39292 * 120.07087 * 179.72339 * 7 5 4 16 16 C 1.52997 * 109.47302 * 240.00016 * 2 1 3 17 17 H 1.09004 * 109.49810 * 299.93551 * 16 2 1 18 18 C 1.53034 * 109.49951 * 59.99624 * 16 2 1 19 19 C 1.53041 * 109.53036 * 181.32353 * 18 16 2 20 20 C 1.53198 * 109.30995 * 298.61732 * 19 18 16 21 21 N 1.46927 * 108.76598 * 54.65265 * 20 19 18 22 22 C 1.36932 * 120.62756 * 126.36034 * 21 20 19 23 23 H 1.08003 * 120.00217 * 207.69713 * 22 21 20 24 24 C 1.38813 * 120.00221 * 27.70598 * 22 21 20 25 25 N 1.31616 * 120.00052 * 17.33741 * 24 22 21 26 26 Si 1.86800 * 119.99664 * 197.34958 * 24 22 21 27 27 H 1.48498 * 109.47504 * 59.99631 * 26 24 22 28 28 H 1.48509 * 109.46746 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47155 * 299.99245 * 26 24 22 30 30 C 1.46923 * 118.73616 * 306.38393 * 21 20 19 31 31 H 1.09002 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47182 * 300.00163 * 1 2 3 33 33 H 1.08999 * 109.47063 * 60.00532 * 1 2 3 34 34 H 0.97001 * 119.99693 * 95.00540 * 4 2 1 35 35 H 1.08006 * 119.92590 * 359.97241 * 8 7 5 36 36 H 1.08004 * 119.85062 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.92407 * 180.02562 * 10 9 8 38 38 H 0.96994 * 120.00101 * 0.02562 * 13 12 11 39 39 H 0.97006 * 119.99943 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.15211 * 359.97438 * 15 7 5 41 41 H 1.09003 * 109.46425 * 301.33950 * 18 16 2 42 42 H 1.09004 * 109.46217 * 61.30869 * 18 16 2 43 43 H 1.08997 * 109.49561 * 58.58046 * 19 18 16 44 44 H 1.09003 * 109.50208 * 178.67886 * 19 18 16 45 45 H 1.09003 * 109.59337 * 294.86381 * 20 19 18 46 46 H 1.09001 * 109.58112 * 174.43638 * 20 19 18 47 47 H 0.96997 * 119.99694 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.59069 * 293.81812 * 30 21 20 49 49 H 1.09003 * 109.58529 * 173.39896 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6404 -0.7150 3.5644 8 6 2.9742 -2.0701 3.5032 9 6 3.4345 -2.7223 4.6295 10 6 3.5692 -2.0408 5.8230 11 6 3.2395 -0.6856 5.8980 12 6 3.3849 0.0427 7.1764 13 7 3.8356 -0.6012 8.2713 14 8 3.0972 1.2219 7.2403 15 6 2.7794 -0.0201 4.7635 16 6 2.0401 -0.7212 -1.2492 17 1 1.6780 -1.7493 -1.2491 18 6 1.5303 -0.0004 -2.4992 19 6 2.0127 -0.7402 -3.7490 20 6 3.5444 -0.7369 -3.7801 21 7 4.0440 -1.2970 -2.5170 22 6 4.9323 -2.3391 -2.5190 23 1 4.9610 -3.0258 -1.6859 24 6 5.7960 -2.5129 -3.5917 25 7 6.0120 -1.5215 -4.4300 26 14 6.6515 -4.1540 -3.8455 27 1 5.6337 -5.2198 -4.0280 28 1 7.5135 -4.0813 -5.0526 29 1 7.4871 -4.4655 -2.6581 30 6 3.5720 -0.7180 -1.2519 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6316 1.1527 35 1 2.8711 -2.6090 2.5728 36 1 3.6908 -3.7702 4.5769 37 1 3.9303 -2.5568 6.7003 38 1 4.0649 -1.5423 8.2205 39 1 3.9306 -0.1235 9.1102 40 1 2.5278 1.0289 4.8149 41 1 0.4405 0.0203 -2.4874 42 1 1.9127 1.0203 -2.5112 43 1 1.6513 -1.7683 -3.7253 44 1 1.6299 -0.2399 -4.6385 45 1 3.9054 0.2852 -3.8948 46 1 3.8941 -1.3459 -4.6137 47 1 6.6158 -1.6429 -5.1793 48 1 3.9354 0.3056 -1.1603 49 1 3.9401 -1.3145 -0.4171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025461252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:30 Heat of formation + Delta-G solvation = -36.927982 kcal Electronic energy + Delta-G solvation = -30118.825230 eV Core-core repulsion = 26045.688611 eV Total energy + Delta-G solvation = -4073.136619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.70984 -39.78030 -38.38655 -37.63801 -35.28285 -34.25867 -33.15515 -31.89981 -31.39081 -30.61552 -30.29218 -28.47396 -25.31138 -24.69501 -24.39452 -22.92807 -21.95382 -21.50944 -20.56716 -20.22751 -19.23487 -18.64101 -17.40210 -16.83337 -16.65640 -16.43230 -15.93606 -15.20707 -15.00798 -14.84057 -14.72993 -14.61522 -14.29790 -14.09191 -13.82197 -13.62797 -13.41190 -13.19397 -12.89690 -12.54337 -12.48184 -12.35676 -12.24449 -11.80745 -11.68089 -11.52779 -11.12815 -10.97727 -10.68023 -10.46761 -10.45193 -10.24453 -10.16094 -10.12127 -9.98844 -9.89254 -9.56523 -9.45530 -9.41135 -9.37971 -8.91865 -8.47858 -6.68767 -5.80617 -3.23162 0.30280 0.76338 2.30636 2.96522 2.98295 3.23204 3.34969 3.41352 3.41858 3.64949 4.30026 4.35436 4.45411 4.46219 4.71920 4.79939 4.95625 5.03246 5.22611 5.26187 5.35749 5.40578 5.53935 5.54877 5.58769 5.74852 5.80171 5.82766 5.88956 5.93279 6.02717 6.06652 6.12746 6.28879 6.31373 6.33833 6.40920 6.43323 6.53887 6.60747 6.70277 6.79475 6.86485 6.89600 6.97160 7.39173 7.54076 7.66223 7.75945 7.85566 8.22498 8.42695 9.19013 9.82861 10.39951 11.27657 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.002660 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.267659 B =10522.841389 C =12208.264161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.712 5.712 5 C 0.557 3.443 6 O -0.535 6.535 7 C -0.136 4.136 8 C -0.056 4.056 9 C -0.132 4.132 10 C -0.065 4.065 11 C -0.151 4.151 12 C 0.565 3.435 13 N -0.852 5.852 14 O -0.534 6.534 15 C -0.001 4.001 16 C -0.111 4.111 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.168 3.832 21 N -0.591 5.591 22 C -0.254 4.254 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.156 3.844 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.400 0.600 39 H 0.406 0.594 40 H 0.150 0.850 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.017 0.983 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.340 -4.130 19.370 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.106 0.894 4 N -0.363 5.363 5 C 0.344 3.656 6 O -0.413 6.413 7 C -0.139 4.139 8 C -0.075 4.075 9 C -0.150 4.150 10 C -0.084 4.084 11 C -0.154 4.154 12 C 0.351 3.649 13 N -0.416 5.416 14 O -0.411 6.411 15 C -0.021 4.021 16 C -0.132 4.132 17 H 0.090 0.910 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.081 0.919 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.209 1.209 30 C 0.029 3.971 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.235 0.765 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.168 0.832 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.035 0.965 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.640 -2.518 19.083 21.099 hybrid contribution 0.861 -1.714 0.110 1.921 sum -7.779 -4.232 19.193 21.137 Atomic orbital electron populations 1.22205 0.95570 1.01901 1.02296 1.21104 0.93559 0.97657 0.83399 0.89389 1.46011 1.66617 1.14154 1.09524 1.18119 0.77910 0.86539 0.83030 1.90788 1.50227 1.15318 1.84919 1.20025 1.04749 0.94443 0.94655 1.21640 0.93568 0.93234 0.99092 1.21079 1.00817 1.00805 0.92252 1.21454 0.95739 0.92882 0.98328 1.19810 1.06796 0.94538 0.94275 1.18217 0.76310 0.86426 0.83945 1.43732 1.69921 1.15237 1.12741 1.90856 1.49463 1.15574 1.85167 1.21397 0.90310 1.00957 0.89408 1.21975 0.99560 0.99175 0.92451 0.91032 1.21446 0.98771 0.99085 0.94631 1.22175 1.00850 0.99317 0.95744 1.20805 0.87462 0.97248 0.90206 1.44031 1.49766 1.38046 0.99491 1.19097 1.11434 1.02238 1.05588 0.91856 1.25034 0.97262 0.97442 0.99873 1.70029 1.37922 1.29391 1.17189 0.86386 0.79119 0.83989 0.77348 1.21065 1.21641 1.20923 1.20858 0.89850 0.96416 0.90004 0.92668 0.92574 0.91183 0.76492 0.84678 0.84418 0.85224 0.76997 0.76315 0.83212 0.93077 0.92540 0.92793 0.93228 0.96491 0.89563 0.93559 0.96501 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.15 2.09 2.16 -67.93 -0.15 1.94 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.71 -9.24 4.43 -54.74 -0.24 -9.48 16 5 C 0.56 8.03 7.74 -12.32 -0.10 7.93 16 6 O -0.53 -9.59 16.00 5.32 0.09 -9.50 16 7 C -0.14 -1.62 5.87 -105.02 -0.62 -2.23 16 8 C -0.06 -0.51 9.54 -39.10 -0.37 -0.88 16 9 C -0.13 -0.92 10.02 -39.70 -0.40 -1.32 16 10 C -0.07 -0.44 9.54 -39.10 -0.37 -0.81 16 11 C -0.15 -1.50 5.87 -105.02 -0.62 -2.11 16 12 C 0.57 5.84 8.05 -12.32 -0.10 5.74 16 13 N -0.85 -4.64 8.82 30.53 0.27 -4.37 16 14 O -0.53 -7.90 17.18 5.32 0.09 -7.81 16 15 C 0.00 -0.01 9.14 -38.78 -0.35 -0.37 16 16 C -0.11 -1.76 1.97 -90.51 -0.18 -1.94 16 17 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.10 -1.62 4.85 -26.69 -0.13 -1.75 16 19 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 20 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 21 N -0.59 -14.34 2.99 -172.32 -0.52 -14.86 16 22 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 23 H 0.06 1.62 7.89 -52.48 -0.41 1.21 16 24 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 25 N -0.90 -25.88 11.19 55.49 0.62 -25.25 16 26 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 C 0.16 3.12 5.56 -3.71 -0.02 3.10 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 34 H 0.40 4.37 6.45 -40.82 -0.26 4.10 16 35 H 0.14 0.99 6.39 -52.48 -0.34 0.65 16 36 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.13 0.38 6.39 -52.49 -0.34 0.05 16 38 H 0.40 0.92 6.85 -40.82 -0.28 0.64 16 39 H 0.41 1.73 8.93 -40.82 -0.36 1.37 16 40 H 0.15 2.14 7.23 -52.49 -0.38 1.76 16 41 H 0.05 0.70 6.36 -51.93 -0.33 0.37 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 LS Contribution 392.29 15.07 5.91 5.91 Total: -1.00 -34.99 392.29 -9.35 -44.34 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.07 Total: 5.01 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.47 Total: -0.12 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.13 Total: -53.96 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.18 Total: -17.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.99 -9.35 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025461252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.414 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds