Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46806 * 2 1 4 4 N 1.46497 * 109.47030 * 119.99377 * 2 1 3 5 5 C 1.34768 * 120.00287 * 275.00443 * 4 2 1 6 6 O 1.21554 * 120.00506 * 359.97438 * 5 4 2 7 7 C 1.47869 * 120.00053 * 180.02562 * 5 4 2 8 8 C 1.39700 * 120.07294 * 0.02562 * 7 5 4 9 9 C 1.38054 * 120.14526 * 180.02562 * 8 7 5 10 10 C 1.38099 * 120.29720 * 359.94889 * 9 8 7 11 11 C 1.39668 * 120.14489 * 0.03018 * 10 9 8 12 12 C 1.47855 * 120.07330 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99917 * 359.97438 * 12 11 10 14 14 O 1.21550 * 120.00136 * 180.02562 * 12 11 10 15 15 C 1.39292 * 120.07087 * 179.72339 * 7 5 4 16 16 C 1.52997 * 109.47302 * 240.00016 * 2 1 3 17 17 H 1.09004 * 109.49810 * 299.93551 * 16 2 1 18 18 C 1.53034 * 109.49951 * 59.99624 * 16 2 1 19 19 C 1.53041 * 109.53036 * 181.32353 * 18 16 2 20 20 C 1.53198 * 109.30995 * 298.61732 * 19 18 16 21 21 N 1.46927 * 108.76598 * 54.65265 * 20 19 18 22 22 C 1.36932 * 120.62756 * 126.36034 * 21 20 19 23 23 H 1.08003 * 120.00217 * 207.69713 * 22 21 20 24 24 C 1.38813 * 120.00221 * 27.70598 * 22 21 20 25 25 N 1.31616 * 120.00052 * 17.33741 * 24 22 21 26 26 Si 1.86800 * 119.99664 * 197.34958 * 24 22 21 27 27 H 1.48498 * 109.47504 * 59.99631 * 26 24 22 28 28 H 1.48509 * 109.46746 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47155 * 299.99245 * 26 24 22 30 30 C 1.46923 * 118.73616 * 306.38393 * 21 20 19 31 31 H 1.09002 * 109.46806 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47182 * 300.00163 * 1 2 3 33 33 H 1.08999 * 109.47063 * 60.00532 * 1 2 3 34 34 H 0.97001 * 119.99693 * 95.00540 * 4 2 1 35 35 H 1.08006 * 119.92590 * 359.97241 * 8 7 5 36 36 H 1.08004 * 119.85062 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.92407 * 180.02562 * 10 9 8 38 38 H 0.96994 * 120.00101 * 0.02562 * 13 12 11 39 39 H 0.97006 * 119.99943 * 180.02562 * 13 12 11 40 40 H 1.07994 * 120.15211 * 359.97438 * 15 7 5 41 41 H 1.09003 * 109.46425 * 301.33950 * 18 16 2 42 42 H 1.09004 * 109.46217 * 61.30869 * 18 16 2 43 43 H 1.08997 * 109.49561 * 58.58046 * 19 18 16 44 44 H 1.09003 * 109.50208 * 178.67886 * 19 18 16 45 45 H 1.09003 * 109.59337 * 294.86381 * 20 19 18 46 46 H 1.09001 * 109.58112 * 174.43638 * 20 19 18 47 47 H 0.96997 * 119.99694 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.59069 * 293.81812 * 30 21 20 49 49 H 1.09003 * 109.58529 * 173.39896 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8583 1.1614 2.4116 7 6 2.6404 -0.7150 3.5644 8 6 2.9742 -2.0701 3.5032 9 6 3.4345 -2.7223 4.6295 10 6 3.5692 -2.0408 5.8230 11 6 3.2395 -0.6856 5.8980 12 6 3.3849 0.0427 7.1764 13 7 3.8356 -0.6012 8.2713 14 8 3.0972 1.2219 7.2403 15 6 2.7794 -0.0201 4.7635 16 6 2.0401 -0.7212 -1.2492 17 1 1.6780 -1.7493 -1.2491 18 6 1.5303 -0.0004 -2.4992 19 6 2.0127 -0.7402 -3.7490 20 6 3.5444 -0.7369 -3.7801 21 7 4.0440 -1.2970 -2.5170 22 6 4.9323 -2.3391 -2.5190 23 1 4.9610 -3.0258 -1.6859 24 6 5.7960 -2.5129 -3.5917 25 7 6.0120 -1.5215 -4.4300 26 14 6.6515 -4.1540 -3.8455 27 1 5.6337 -5.2198 -4.0280 28 1 7.5135 -4.0813 -5.0526 29 1 7.4871 -4.4655 -2.6581 30 6 3.5720 -0.7180 -1.2519 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8900 34 1 2.2491 -1.6316 1.1527 35 1 2.8711 -2.6090 2.5728 36 1 3.6908 -3.7702 4.5769 37 1 3.9303 -2.5568 6.7003 38 1 4.0649 -1.5423 8.2205 39 1 3.9306 -0.1235 9.1102 40 1 2.5278 1.0289 4.8149 41 1 0.4405 0.0203 -2.4874 42 1 1.9127 1.0203 -2.5112 43 1 1.6513 -1.7683 -3.7253 44 1 1.6299 -0.2399 -4.6385 45 1 3.9054 0.2852 -3.8948 46 1 3.8941 -1.3459 -4.6137 47 1 6.6158 -1.6429 -5.1793 48 1 3.9354 0.3056 -1.1603 49 1 3.9401 -1.3145 -0.4171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025461252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = -62.386238 kcal Electronic energy + Delta-G solvation = -30119.929183 eV Core-core repulsion = 26045.688611 eV Total energy + Delta-G solvation = -4074.240572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.61450 -40.77738 -39.58589 -38.74717 -36.74125 -35.01283 -34.71827 -33.06382 -32.31232 -32.11750 -31.46558 -29.84408 -27.13564 -25.67835 -25.28126 -24.16845 -23.59082 -22.35531 -21.87623 -21.30881 -20.58629 -19.52045 -18.66783 -18.07674 -17.68057 -17.25806 -16.96772 -16.76125 -16.17363 -15.94473 -15.86262 -15.57559 -15.48751 -15.35626 -14.95555 -14.80575 -14.74757 -14.66083 -14.14478 -14.04190 -13.73908 -13.50128 -13.22983 -13.01595 -12.98935 -12.72612 -12.58673 -12.47035 -12.29501 -12.20519 -11.96286 -11.76115 -11.50585 -11.34574 -11.28776 -11.10965 -10.92131 -10.79706 -10.50564 -10.27901 -10.10380 -9.97367 -8.66658 -7.84542 -5.30569 -0.41493 -0.03489 1.49011 1.51823 1.51950 1.58342 2.01769 2.06328 2.47916 2.53178 2.83897 3.29996 3.51573 3.60186 3.73288 3.81077 3.93798 4.00399 4.03899 4.06626 4.08848 4.34314 4.35366 4.44497 4.50508 4.57517 4.65421 4.77977 4.85459 4.87593 4.87781 4.95238 5.04836 5.10771 5.14115 5.19046 5.23758 5.26096 5.26917 5.34549 5.45955 5.52059 5.59320 5.68153 5.70172 5.79539 5.83332 6.37028 6.40137 6.49892 7.15382 7.16394 7.23877 7.87770 8.40696 9.21797 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.002660 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.267659 B =10522.841389 C =12208.264161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.061 0.939 4 N -0.703 5.703 5 C 0.554 3.446 6 O -0.583 6.583 7 C -0.156 4.156 8 C -0.054 4.054 9 C -0.122 4.122 10 C -0.043 4.043 11 C -0.161 4.161 12 C 0.560 3.440 13 N -0.823 5.823 14 O -0.592 6.592 15 C -0.027 4.027 16 C -0.092 4.092 17 H 0.085 0.915 18 C -0.099 4.099 19 C -0.129 4.129 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.260 4.260 23 H 0.074 0.926 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.274 1.274 28 H -0.300 1.300 29 H -0.273 1.273 30 C 0.155 3.845 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.412 0.588 35 H 0.154 0.846 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.420 0.580 39 H 0.414 0.586 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.068 0.932 45 H -0.014 1.014 46 H 0.053 0.947 47 H 0.248 0.752 48 H -0.008 1.008 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -8.149 21.235 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.080 0.920 4 N -0.354 5.354 5 C 0.342 3.658 6 O -0.464 6.464 7 C -0.159 4.159 8 C -0.073 4.073 9 C -0.139 4.139 10 C -0.062 4.062 11 C -0.165 4.165 12 C 0.347 3.653 13 N -0.388 5.388 14 O -0.474 6.474 15 C -0.047 4.047 16 C -0.113 4.113 17 H 0.103 0.897 18 C -0.137 4.137 19 C -0.168 4.168 20 C 0.046 3.954 21 N -0.331 5.331 22 C -0.391 4.391 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.585 5.585 26 Si 0.797 3.203 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.199 1.199 30 C 0.029 3.971 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.196 0.804 37 H 0.195 0.805 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.010 0.990 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.365 -6.617 20.999 23.926 hybrid contribution 1.157 -0.479 -0.380 1.309 sum -8.207 -7.095 20.619 23.299 Atomic orbital electron populations 1.22130 0.93466 1.03137 1.02372 1.20926 0.95038 0.96102 0.83057 0.92048 1.45902 1.66144 1.14597 1.08798 1.18590 0.77090 0.86095 0.83995 1.90756 1.52442 1.17469 1.85719 1.19828 1.07007 0.95892 0.93179 1.21913 0.92735 0.91686 1.00929 1.21576 0.98782 1.02443 0.91098 1.21956 0.93011 0.91057 1.00133 1.19858 1.07380 0.96060 0.93160 1.18413 0.76019 0.85822 0.85068 1.43500 1.67581 1.16065 1.11677 1.90831 1.52375 1.18115 1.86075 1.21227 0.92536 0.99783 0.91186 1.21740 0.96031 1.00159 0.93344 0.89672 1.21455 1.00940 0.98062 0.93232 1.21997 0.96574 1.00280 0.97940 1.20650 0.91016 0.94608 0.89136 1.44314 1.49851 1.38001 1.00906 1.19537 1.11163 1.02746 1.05607 0.90840 1.25854 0.98546 1.00603 1.00007 1.70211 1.39074 1.31443 1.17800 0.85317 0.78038 0.80036 0.76915 1.20021 1.22648 1.19880 1.20961 0.92837 0.94716 0.88565 0.90744 0.93614 0.90045 0.75038 0.82851 0.80368 0.80472 0.74711 0.75322 0.86975 0.89357 0.93499 0.92316 0.91368 0.99545 0.92861 0.94278 0.99044 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.13 71.98 0.66 -2.83 16 2 C 0.15 4.26 2.16 44.99 0.10 4.35 16 3 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 4 N -0.70 -17.84 4.43 -445.39 -1.97 -19.82 16 5 C 0.55 16.55 7.74 86.79 0.67 17.22 16 6 O -0.58 -22.52 16.00 -3.88 -0.06 -22.58 16 7 C -0.16 -3.75 5.87 -20.12 -0.12 -3.86 16 8 C -0.05 -0.82 9.54 22.58 0.22 -0.61 16 9 C -0.12 -1.13 10.02 22.19 0.22 -0.90 16 10 C -0.04 -0.40 9.54 22.58 0.22 -0.19 16 11 C -0.16 -3.05 5.87 -20.12 -0.12 -3.17 16 12 C 0.56 11.38 8.05 86.79 0.70 12.08 16 13 N -0.82 -6.97 8.82 -175.60 -1.55 -8.52 16 14 O -0.59 -18.63 17.18 -3.87 -0.07 -18.70 16 15 C -0.03 -0.71 9.14 22.79 0.21 -0.51 16 16 C -0.09 -2.81 1.97 -10.72 -0.02 -2.83 16 17 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 18 C -0.10 -3.00 4.85 30.62 0.15 -2.85 16 19 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 20 C 0.17 8.25 5.31 86.36 0.46 8.71 16 21 N -0.61 -29.80 2.99 -699.08 -2.09 -31.89 16 22 C -0.26 -13.82 9.58 84.03 0.81 -13.01 16 23 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 24 C -0.06 -3.02 4.91 84.86 0.42 -2.61 16 25 N -0.94 -55.69 11.19 21.65 0.24 -55.45 16 26 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 30 C 0.15 6.24 5.56 86.36 0.48 6.71 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.67 6.40 -2.39 -0.02 1.66 16 34 H 0.41 8.21 6.45 -92.71 -0.60 7.61 16 35 H 0.15 1.70 6.39 -2.91 -0.02 1.68 16 36 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 37 H 0.18 -0.09 6.39 -2.91 -0.02 -0.11 16 38 H 0.42 0.14 6.85 -92.71 -0.64 -0.49 16 39 H 0.41 2.68 8.93 -92.70 -0.83 1.85 16 40 H 0.11 3.72 7.23 -2.91 -0.02 3.70 16 41 H 0.09 2.10 6.36 -2.39 -0.02 2.08 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.05 2.90 6.04 -2.39 -0.01 2.89 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H 0.06 2.16 7.45 -2.39 -0.02 2.14 16 Total: -1.00 -83.87 392.29 0.70 -83.17 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -1.05 Total: 16.91 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.22 Total: 11.30 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.37 Total: -115.67 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.13 Total: -41.28 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -83.87 0.70 -83.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025461252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.780 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds