Wall clock time and date at job start Wed Apr 1 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46573 * 2 1 4 4 N 1.46495 * 109.47187 * 119.99851 * 2 1 3 5 5 C 1.34780 * 120.00235 * 275.00463 * 4 2 1 6 6 O 1.21548 * 119.99475 * 359.97438 * 5 4 2 7 7 C 1.47859 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.39697 * 120.07539 * 359.72273 * 7 5 4 9 9 C 1.38055 * 120.14622 * 179.79051 * 8 7 5 10 10 C 1.38090 * 120.29763 * 0.46218 * 9 8 7 11 11 C 1.39669 * 120.14565 * 359.79236 * 10 9 8 12 12 C 1.47853 * 120.07791 * 179.97438 * 11 10 9 13 13 N 1.34778 * 119.99998 * 0.02562 * 12 11 10 14 14 O 1.21549 * 120.00400 * 180.02562 * 12 11 10 15 15 C 1.39301 * 120.07109 * 179.97438 * 7 5 4 16 16 C 1.53003 * 109.47244 * 240.00257 * 2 1 3 17 17 H 1.09000 * 109.49725 * 184.93642 * 16 2 1 18 18 C 1.53033 * 109.49805 * 64.83213 * 16 2 1 19 19 C 1.53076 * 109.65646 * 178.74886 * 18 16 2 20 20 C 1.53183 * 109.29478 * 61.15632 * 19 18 16 21 21 N 1.46930 * 108.89468 * 305.57480 * 20 19 18 22 22 C 1.36937 * 120.63259 * 233.51494 * 21 20 19 23 23 H 1.08000 * 119.99761 * 151.83401 * 22 21 20 24 24 C 1.38806 * 120.00219 * 331.83653 * 22 21 20 25 25 N 1.31624 * 120.00191 * 343.07619 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.07294 * 24 22 21 27 27 H 1.48506 * 109.46812 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47258 * 119.99807 * 26 24 22 29 29 H 1.48499 * 109.47344 * 240.00342 * 26 24 22 30 30 C 1.46925 * 118.73328 * 53.53726 * 21 20 19 31 31 H 1.08992 * 109.47588 * 299.99741 * 1 2 3 32 32 H 1.09000 * 109.47598 * 60.00281 * 1 2 3 33 33 H 1.09009 * 109.46955 * 179.97438 * 1 2 3 34 34 H 0.96998 * 120.00135 * 95.00364 * 4 2 1 35 35 H 1.08009 * 119.92742 * 0.02562 * 8 7 5 36 36 H 1.08007 * 119.85181 * 180.20963 * 9 8 7 37 37 H 1.07998 * 119.93008 * 179.76652 * 10 9 8 38 38 H 0.96998 * 119.99816 * 359.97438 * 13 12 11 39 39 H 0.97000 * 120.00325 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.14568 * 359.95382 * 15 7 5 41 41 H 1.08994 * 109.46674 * 298.70673 * 18 16 2 42 42 H 1.09001 * 109.46050 * 58.66664 * 18 16 2 43 43 H 1.09005 * 109.39190 * 301.27539 * 19 18 16 44 44 H 1.09004 * 109.62337 * 181.17332 * 19 18 16 45 45 H 1.09005 * 109.58619 * 185.72200 * 20 19 18 46 46 H 1.08998 * 109.58733 * 65.43770 * 20 19 18 47 47 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 48 48 H 1.09001 * 109.58688 * 66.18006 * 30 21 20 49 49 H 1.08999 * 109.58376 * 186.60219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1612 2.4116 7 6 2.6404 -0.7151 3.5643 8 6 2.9682 -2.0717 3.5046 9 6 3.4331 -2.7228 4.6298 10 6 3.5684 -2.0412 5.8231 11 6 3.2392 -0.6859 5.8980 12 6 3.3841 0.0422 7.1766 13 7 3.8347 -0.6017 8.2715 14 8 3.0968 1.2216 7.2404 15 6 2.7744 -0.0215 4.7649 16 6 2.0400 -0.7212 -1.2493 17 1 3.1264 -0.7986 -1.2066 18 6 1.6319 0.0665 -2.4962 19 6 2.1672 -0.6354 -3.7468 20 6 1.5608 -2.0392 -3.8380 21 7 1.8250 -2.7541 -2.5818 22 6 2.4277 -3.9836 -2.5921 23 1 3.0185 -4.3025 -1.7462 24 6 2.2793 -4.8201 -3.6899 25 7 1.3171 -4.5992 -4.5604 26 14 3.4453 -6.2594 -3.9318 27 1 4.4312 -6.2897 -2.8217 28 1 2.6718 -7.5269 -3.9409 29 1 4.1595 -6.1060 -5.2247 30 6 1.4296 -2.1247 -1.3144 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6317 1.1526 35 1 2.8613 -2.6116 2.5753 36 1 3.6884 -3.7710 4.5774 37 1 3.9291 -2.5573 6.7005 38 1 4.0636 -1.5429 8.2207 39 1 3.9294 -0.1241 9.1105 40 1 2.5192 1.0266 4.8172 41 1 0.5448 0.1223 -2.5509 42 1 2.0447 1.0738 -2.4407 43 1 3.2527 -0.7114 -3.6825 44 1 1.8940 -0.0629 -4.6332 45 1 2.0147 -2.5800 -4.6685 46 1 0.4850 -1.9630 -3.9959 47 1 1.2132 -5.1839 -5.3273 48 1 0.3431 -2.0533 -1.2652 49 1 1.7968 -2.7220 -0.4798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025461253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:35 Heat of formation + Delta-G solvation = -35.392536 kcal Electronic energy + Delta-G solvation = -30074.823766 eV Core-core repulsion = 26001.753729 eV Total energy + Delta-G solvation = -4073.070037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.73931 -39.82301 -38.46612 -37.70401 -35.24851 -34.28442 -33.16805 -31.93111 -31.41327 -30.49546 -30.46534 -28.09013 -25.34619 -24.84238 -24.54243 -23.17641 -22.20432 -21.52223 -20.62916 -20.03206 -19.00761 -18.50061 -17.41821 -16.90973 -16.61660 -16.44284 -15.89936 -15.23269 -15.01321 -14.96434 -14.75277 -14.63047 -14.39074 -14.11420 -13.95887 -13.73359 -13.47950 -13.15631 -12.86608 -12.46315 -12.41941 -12.36153 -12.25814 -11.82613 -11.70105 -11.63400 -11.03845 -10.95919 -10.60449 -10.50317 -10.48919 -10.21159 -10.16297 -10.14779 -9.97115 -9.89072 -9.63108 -9.45198 -9.42288 -9.40664 -8.94293 -8.50892 -6.70412 -5.83630 -3.26720 0.27766 0.73662 2.28051 2.93828 2.95893 3.21664 3.32284 3.40338 3.41795 3.62105 4.28177 4.33356 4.43420 4.44689 4.70036 4.78510 4.99621 5.02056 5.20147 5.22735 5.36275 5.40513 5.52910 5.55323 5.67175 5.69122 5.79697 5.84443 5.88218 5.91292 5.99740 6.12665 6.20339 6.23643 6.29148 6.32313 6.39051 6.46790 6.55047 6.61769 6.68255 6.75483 6.84704 6.86987 6.95114 7.37112 7.53116 7.64205 7.73897 7.82822 8.19769 8.39869 9.16019 9.79692 10.36642 11.24471 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002497 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.149226 B =11210.498378 C =12906.095511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.084 0.916 4 N -0.714 5.714 5 C 0.556 3.444 6 O -0.537 6.537 7 C -0.137 4.137 8 C -0.057 4.057 9 C -0.131 4.131 10 C -0.065 4.065 11 C -0.151 4.151 12 C 0.565 3.435 13 N -0.852 5.852 14 O -0.534 6.534 15 C -0.001 4.001 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.151 3.849 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.401 0.599 39 H 0.406 0.594 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.253 0.747 48 H 0.027 0.973 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 4.018 19.692 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.102 0.898 4 N -0.365 5.365 5 C 0.343 3.657 6 O -0.415 6.415 7 C -0.140 4.140 8 C -0.076 4.076 9 C -0.149 4.149 10 C -0.084 4.084 11 C -0.155 4.155 12 C 0.351 3.649 13 N -0.416 5.416 14 O -0.411 6.411 15 C -0.021 4.021 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.216 1.216 30 C 0.025 3.975 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.168 0.832 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.682 5.501 19.409 20.507 hybrid contribution 0.879 -1.687 0.093 1.904 sum 4.561 3.814 19.502 20.388 Atomic orbital electron populations 1.22266 0.95268 1.02782 1.02033 1.21080 0.94285 0.96826 0.83289 0.89822 1.46118 1.66473 1.14342 1.09580 1.18145 0.77944 0.86549 0.83070 1.90781 1.50357 1.15407 1.84913 1.20029 1.04824 0.94458 0.94668 1.21674 0.93452 0.93183 0.99257 1.21095 1.00725 1.00839 0.92240 1.21460 0.95775 0.92848 0.98304 1.19808 1.06808 0.94562 0.94276 1.18216 0.76293 0.86427 0.83951 1.43734 1.69912 1.15245 1.12733 1.90854 1.49470 1.15588 1.85192 1.21394 0.90350 1.00966 0.89400 1.21959 1.00925 0.98032 0.92481 0.90934 1.21420 1.00565 0.97252 0.94625 1.22183 1.00597 0.99580 0.95793 1.20783 0.96650 0.88022 0.90163 1.44024 1.69778 1.17619 0.99911 1.19171 1.23247 0.92073 1.03795 0.91801 1.25046 0.97369 0.97658 0.99522 1.70042 1.30135 1.39465 1.14816 0.86256 0.80622 0.82245 0.77811 1.20290 1.21747 1.21560 1.20996 0.96251 0.90306 0.89988 0.92798 0.91296 0.91550 0.76255 0.84583 0.84341 0.85204 0.76980 0.76311 0.83230 0.92206 0.93479 0.92833 0.93160 0.89634 0.96432 0.93657 0.95572 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.76 37.16 0.33 -1.97 16 2 C 0.15 2.14 2.35 -67.93 -0.16 1.98 16 3 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -9.35 4.96 -54.75 -0.27 -9.63 16 5 C 0.56 7.88 7.74 -12.32 -0.10 7.79 16 6 O -0.54 -9.40 16.00 5.32 0.09 -9.31 16 7 C -0.14 -1.60 5.87 -105.02 -0.62 -2.21 16 8 C -0.06 -0.51 9.54 -39.10 -0.37 -0.88 16 9 C -0.13 -0.91 10.02 -39.70 -0.40 -1.31 16 10 C -0.06 -0.42 9.54 -39.10 -0.37 -0.80 16 11 C -0.15 -1.45 5.87 -105.02 -0.62 -2.06 16 12 C 0.57 5.64 8.05 -12.33 -0.10 5.54 16 13 N -0.85 -4.37 8.82 30.53 0.27 -4.10 16 14 O -0.53 -7.70 17.18 5.32 0.09 -7.61 16 15 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 16 C -0.11 -1.81 2.28 -90.50 -0.21 -2.02 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -1.62 4.88 -26.67 -0.13 -1.75 16 19 C -0.14 -2.62 6.09 -26.60 -0.16 -2.79 16 20 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 21 N -0.59 -13.94 3.00 -172.32 -0.52 -14.46 16 22 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 23 H 0.06 1.61 7.89 -52.49 -0.41 1.20 16 24 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.39 11.20 55.49 0.62 -24.76 16 26 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 C 0.15 2.86 5.26 -3.71 -0.02 2.84 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.92 6.59 -51.93 -0.34 0.57 16 33 H 0.07 0.94 6.23 -51.92 -0.32 0.61 16 34 H 0.40 4.65 5.29 -40.82 -0.22 4.43 16 35 H 0.14 1.05 6.39 -52.48 -0.34 0.71 16 36 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.13 0.36 6.39 -52.49 -0.34 0.02 16 38 H 0.40 0.81 6.85 -40.82 -0.28 0.53 16 39 H 0.41 1.61 8.93 -40.82 -0.36 1.24 16 40 H 0.15 2.08 7.23 -52.49 -0.38 1.70 16 41 H 0.06 0.95 6.62 -51.93 -0.34 0.61 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.03 0.51 6.06 -51.93 -0.31 0.20 16 49 H 0.05 0.81 6.75 -51.93 -0.35 0.46 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -34.18 387.32 -9.24 -43.42 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.80 Total: 5.62 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.53 Total: -0.88 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.10 Total: -52.95 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.18 Total: -16.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.18 -9.24 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025461253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.030 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds