Wall clock time and date at job start Wed Apr 1 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46573 * 2 1 4 4 N 1.46495 * 109.47187 * 119.99851 * 2 1 3 5 5 C 1.34780 * 120.00235 * 275.00463 * 4 2 1 6 6 O 1.21548 * 119.99475 * 359.97438 * 5 4 2 7 7 C 1.47859 * 120.00165 * 180.02562 * 5 4 2 8 8 C 1.39697 * 120.07539 * 359.72273 * 7 5 4 9 9 C 1.38055 * 120.14622 * 179.79051 * 8 7 5 10 10 C 1.38090 * 120.29763 * 0.46218 * 9 8 7 11 11 C 1.39669 * 120.14565 * 359.79236 * 10 9 8 12 12 C 1.47853 * 120.07791 * 179.97438 * 11 10 9 13 13 N 1.34778 * 119.99998 * 0.02562 * 12 11 10 14 14 O 1.21549 * 120.00400 * 180.02562 * 12 11 10 15 15 C 1.39301 * 120.07109 * 179.97438 * 7 5 4 16 16 C 1.53003 * 109.47244 * 240.00257 * 2 1 3 17 17 H 1.09000 * 109.49725 * 184.93642 * 16 2 1 18 18 C 1.53033 * 109.49805 * 64.83213 * 16 2 1 19 19 C 1.53076 * 109.65646 * 178.74886 * 18 16 2 20 20 C 1.53183 * 109.29478 * 61.15632 * 19 18 16 21 21 N 1.46930 * 108.89468 * 305.57480 * 20 19 18 22 22 C 1.36937 * 120.63259 * 233.51494 * 21 20 19 23 23 H 1.08000 * 119.99761 * 151.83401 * 22 21 20 24 24 C 1.38806 * 120.00219 * 331.83653 * 22 21 20 25 25 N 1.31624 * 120.00191 * 343.07619 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.07294 * 24 22 21 27 27 H 1.48506 * 109.46812 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47258 * 119.99807 * 26 24 22 29 29 H 1.48499 * 109.47344 * 240.00342 * 26 24 22 30 30 C 1.46925 * 118.73328 * 53.53726 * 21 20 19 31 31 H 1.08992 * 109.47588 * 299.99741 * 1 2 3 32 32 H 1.09000 * 109.47598 * 60.00281 * 1 2 3 33 33 H 1.09009 * 109.46955 * 179.97438 * 1 2 3 34 34 H 0.96998 * 120.00135 * 95.00364 * 4 2 1 35 35 H 1.08009 * 119.92742 * 0.02562 * 8 7 5 36 36 H 1.08007 * 119.85181 * 180.20963 * 9 8 7 37 37 H 1.07998 * 119.93008 * 179.76652 * 10 9 8 38 38 H 0.96998 * 119.99816 * 359.97438 * 13 12 11 39 39 H 0.97000 * 120.00325 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.14568 * 359.95382 * 15 7 5 41 41 H 1.08994 * 109.46674 * 298.70673 * 18 16 2 42 42 H 1.09001 * 109.46050 * 58.66664 * 18 16 2 43 43 H 1.09005 * 109.39190 * 301.27539 * 19 18 16 44 44 H 1.09004 * 109.62337 * 181.17332 * 19 18 16 45 45 H 1.09005 * 109.58619 * 185.72200 * 20 19 18 46 46 H 1.08998 * 109.58733 * 65.43770 * 20 19 18 47 47 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 48 48 H 1.09001 * 109.58688 * 66.18006 * 30 21 20 49 49 H 1.08999 * 109.58376 * 186.60219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1612 2.4116 7 6 2.6404 -0.7151 3.5643 8 6 2.9682 -2.0717 3.5046 9 6 3.4331 -2.7228 4.6298 10 6 3.5684 -2.0412 5.8231 11 6 3.2392 -0.6859 5.8980 12 6 3.3841 0.0422 7.1766 13 7 3.8347 -0.6017 8.2715 14 8 3.0968 1.2216 7.2404 15 6 2.7744 -0.0215 4.7649 16 6 2.0400 -0.7212 -1.2493 17 1 3.1264 -0.7986 -1.2066 18 6 1.6319 0.0665 -2.4962 19 6 2.1672 -0.6354 -3.7468 20 6 1.5608 -2.0392 -3.8380 21 7 1.8250 -2.7541 -2.5818 22 6 2.4277 -3.9836 -2.5921 23 1 3.0185 -4.3025 -1.7462 24 6 2.2793 -4.8201 -3.6899 25 7 1.3171 -4.5992 -4.5604 26 14 3.4453 -6.2594 -3.9318 27 1 4.4312 -6.2897 -2.8217 28 1 2.6718 -7.5269 -3.9409 29 1 4.1595 -6.1060 -5.2247 30 6 1.4296 -2.1247 -1.3144 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 2.2491 -1.6317 1.1526 35 1 2.8613 -2.6116 2.5753 36 1 3.6884 -3.7710 4.5774 37 1 3.9291 -2.5573 6.7005 38 1 4.0636 -1.5429 8.2207 39 1 3.9294 -0.1241 9.1105 40 1 2.5192 1.0266 4.8172 41 1 0.5448 0.1223 -2.5509 42 1 2.0447 1.0738 -2.4407 43 1 3.2527 -0.7114 -3.6825 44 1 1.8940 -0.0629 -4.6332 45 1 2.0147 -2.5800 -4.6685 46 1 0.4850 -1.9630 -3.9959 47 1 1.2132 -5.1839 -5.3273 48 1 0.3431 -2.0533 -1.2652 49 1 1.7968 -2.7220 -0.4798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025461253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:33 Heat of formation + Delta-G solvation = -59.878533 kcal Electronic energy + Delta-G solvation = -30075.885559 eV Core-core repulsion = 26001.753729 eV Total energy + Delta-G solvation = -4074.131830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.63210 -40.80199 -39.65519 -38.75288 -36.70534 -35.00553 -34.70883 -33.06470 -32.26792 -32.12177 -31.53888 -29.44722 -27.19757 -25.88419 -25.31527 -24.34755 -23.80952 -22.36928 -21.96750 -21.04989 -20.21536 -19.50041 -18.64302 -18.06754 -17.68308 -17.21975 -16.90959 -16.78866 -16.25557 -15.92843 -15.80313 -15.73324 -15.48456 -15.43565 -15.06697 -14.80902 -14.71932 -14.69369 -14.09172 -13.94829 -13.79463 -13.42787 -13.28448 -13.06945 -12.97326 -12.77995 -12.68353 -12.46599 -12.23420 -12.04146 -11.91653 -11.68389 -11.49970 -11.33903 -11.28722 -11.06658 -10.96038 -10.78939 -10.49748 -10.29013 -10.10996 -9.98881 -8.62133 -7.83051 -5.28332 -0.42279 -0.03803 1.48489 1.51266 1.51473 1.60621 2.02830 2.03783 2.48173 2.53939 2.83326 3.32107 3.52936 3.62166 3.73135 3.80797 3.92900 3.99502 4.03564 4.06269 4.08424 4.33701 4.35696 4.41313 4.47752 4.56597 4.66251 4.71297 4.86348 4.87775 4.89108 4.97442 5.04455 5.12344 5.15772 5.18601 5.20835 5.25598 5.30066 5.35992 5.45920 5.51115 5.60950 5.68887 5.71109 5.81679 5.83904 6.37422 6.42715 6.47742 7.12688 7.18676 7.24329 7.90495 8.42752 9.23269 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002497 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.149226 B =11210.498378 C =12906.095511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.078 0.922 4 N -0.706 5.706 5 C 0.555 3.445 6 O -0.580 6.580 7 C -0.156 4.156 8 C -0.056 4.056 9 C -0.122 4.122 10 C -0.042 4.042 11 C -0.160 4.160 12 C 0.561 3.439 13 N -0.824 5.824 14 O -0.592 6.592 15 C -0.025 4.025 16 C -0.097 4.097 17 H 0.068 0.932 18 C -0.099 4.099 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.256 4.256 23 H 0.073 0.927 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.963 3.037 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.296 1.296 30 C 0.150 3.850 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.410 0.590 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.419 0.581 39 H 0.414 0.586 40 H 0.115 0.885 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.050 0.950 46 H -0.005 1.005 47 H 0.248 0.752 48 H 0.024 0.976 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 2.124 21.920 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 H 0.096 0.904 4 N -0.358 5.358 5 C 0.344 3.656 6 O -0.461 6.461 7 C -0.159 4.159 8 C -0.074 4.074 9 C -0.139 4.139 10 C -0.061 4.061 11 C -0.164 4.164 12 C 0.347 3.653 13 N -0.389 5.389 14 O -0.473 6.473 15 C -0.045 4.045 16 C -0.117 4.117 17 H 0.086 0.914 18 C -0.137 4.137 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.332 5.332 22 C -0.386 4.386 23 H 0.090 0.910 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.792 3.208 27 H -0.185 1.185 28 H -0.222 1.222 29 H -0.223 1.223 30 C 0.025 3.975 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.167 0.833 36 H 0.194 0.806 37 H 0.195 0.805 38 H 0.253 0.747 39 H 0.247 0.753 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.013 0.987 47 H 0.057 0.943 48 H 0.041 0.959 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.385 3.554 21.694 22.633 hybrid contribution 0.363 -1.147 -0.507 1.306 sum 5.748 2.407 21.187 22.085 Atomic orbital electron populations 1.22208 0.94845 1.02582 1.02129 1.20891 0.94471 0.96345 0.82974 0.90380 1.46011 1.66101 1.14631 1.09029 1.18575 0.77081 0.86120 0.83864 1.90751 1.52365 1.17342 1.85618 1.19813 1.07035 0.95749 0.93282 1.21896 0.92867 0.91795 1.00886 1.21557 0.98837 1.02369 0.91178 1.21947 0.93038 0.91099 0.99983 1.19857 1.07280 0.95998 0.93226 1.18394 0.76015 0.85827 0.85035 1.43508 1.67584 1.16065 1.11696 1.90831 1.52329 1.18069 1.86076 1.21227 0.92375 0.99876 0.91009 1.21731 1.00316 0.96321 0.93347 0.91374 1.21418 1.00881 0.98144 0.93213 1.22017 0.99950 0.97062 0.97978 1.20595 0.95219 0.90149 0.89193 1.44286 1.69980 1.17438 1.01455 1.19561 1.22662 0.92656 1.03706 0.90969 1.25788 0.98890 1.00432 0.99745 1.70198 1.32020 1.40660 1.15373 0.85265 0.78858 0.79040 0.77637 1.18550 1.22210 1.22309 1.21129 0.96253 0.91755 0.88353 0.93340 0.90598 0.91799 0.75225 0.83285 0.80589 0.80477 0.74730 0.75315 0.86707 0.91834 0.90977 0.93236 0.91383 0.93203 0.98652 0.94333 0.95865 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 8.76 71.98 0.63 -3.68 16 2 C 0.16 4.37 2.35 44.99 0.11 4.48 16 3 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 4 N -0.71 -17.99 4.96 -445.39 -2.21 -20.20 16 5 C 0.56 15.99 7.74 86.79 0.67 16.66 16 6 O -0.58 -21.29 16.00 -3.87 -0.06 -21.35 16 7 C -0.16 -3.61 5.87 -20.12 -0.12 -3.72 16 8 C -0.06 -0.85 9.54 22.58 0.22 -0.64 16 9 C -0.12 -1.13 10.02 22.19 0.22 -0.91 16 10 C -0.04 -0.37 9.54 22.58 0.22 -0.15 16 11 C -0.16 -2.86 5.87 -20.12 -0.12 -2.98 16 12 C 0.56 10.75 8.05 86.79 0.70 11.45 16 13 N -0.82 -6.22 8.82 -175.60 -1.55 -7.77 16 14 O -0.59 -17.82 17.18 -3.87 -0.07 -17.89 16 15 C -0.02 -0.62 9.14 22.79 0.21 -0.41 16 16 C -0.10 -2.95 2.28 -10.72 -0.02 -2.98 16 17 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.10 -3.00 4.88 30.63 0.15 -2.85 16 19 C -0.13 -4.72 6.09 30.68 0.19 -4.53 16 20 C 0.17 8.13 5.30 86.36 0.46 8.59 16 21 N -0.61 -28.62 3.00 -699.11 -2.09 -30.71 16 22 C -0.26 -13.18 9.58 84.03 0.81 -12.38 16 23 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 24 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 25 N -0.94 -54.10 11.20 21.65 0.24 -53.86 16 26 Si 0.96 43.02 29.59 68.60 2.03 45.05 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 28 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 29 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 30 C 0.15 5.53 5.26 86.36 0.45 5.98 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.93 6.59 -2.39 -0.02 1.91 16 33 H 0.06 1.75 6.23 -2.38 -0.01 1.73 16 34 H 0.41 8.85 5.29 -92.71 -0.49 8.36 16 35 H 0.15 1.83 6.39 -2.91 -0.02 1.82 16 36 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.18 -0.18 6.39 -2.91 -0.02 -0.20 16 38 H 0.42 -0.17 6.85 -92.71 -0.64 -0.81 16 39 H 0.41 2.31 8.93 -92.71 -0.83 1.48 16 40 H 0.11 3.60 7.23 -2.91 -0.02 3.58 16 41 H 0.06 1.91 6.62 -2.39 -0.02 1.90 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.05 2.67 6.06 -2.38 -0.01 2.66 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 48 H 0.02 0.89 6.06 -2.39 -0.01 0.87 16 49 H 0.06 1.94 6.75 -2.39 -0.02 1.93 16 Total: -1.00 -79.48 387.32 0.53 -78.95 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.93 Total: 18.31 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.18 Total: 9.47 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -5.61 Total: -112.54 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.13 Total: -39.24 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -79.48 0.53 -78.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025461253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.072 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds