Wall clock time and date at job start Wed Apr 1 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47805 * 2 1 4 4 N 1.46501 * 109.47423 * 120.00583 * 2 1 3 5 5 C 1.34771 * 119.99611 * 275.00058 * 4 2 1 6 6 O 1.21521 * 120.00524 * 359.97438 * 5 4 2 7 7 C 1.48042 * 119.99895 * 179.97438 * 5 4 2 8 8 C 1.39555 * 119.99937 * 359.72317 * 7 5 4 9 9 C 1.37813 * 120.00012 * 179.73922 * 8 7 5 10 10 C 1.39554 * 119.99910 * 0.56067 * 9 8 7 11 11 C 1.48038 * 120.00309 * 179.72095 * 10 9 8 12 12 N 1.34783 * 119.99500 * 359.97438 * 11 10 9 13 13 O 1.21520 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.39556 * 120.00138 * 359.68968 * 10 9 8 15 15 C 1.37814 * 119.99772 * 0.03334 * 14 10 9 16 16 C 1.53000 * 109.46905 * 240.00383 * 2 1 3 17 17 H 1.09006 * 109.50078 * 185.07002 * 16 2 1 18 18 C 1.53037 * 109.50250 * 65.00037 * 16 2 1 19 19 C 1.53041 * 109.54218 * 178.68146 * 18 16 2 20 20 C 1.53196 * 109.31024 * 61.36679 * 19 18 16 21 21 N 1.46918 * 108.77545 * 305.36614 * 20 19 18 22 22 C 1.36937 * 120.63145 * 233.60861 * 21 20 19 23 23 H 1.08006 * 120.00233 * 151.84237 * 22 21 20 24 24 C 1.38811 * 119.99874 * 331.84324 * 22 21 20 25 25 N 1.31622 * 120.00017 * 343.06974 * 24 22 21 26 26 Si 1.86801 * 120.00107 * 163.06158 * 24 22 21 27 27 H 1.48498 * 109.46873 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46916 * 120.00383 * 26 24 22 29 29 H 1.48496 * 109.47235 * 240.00360 * 26 24 22 30 30 C 1.46925 * 118.74254 * 53.60721 * 21 20 19 31 31 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47004 * 300.00272 * 1 2 3 33 33 H 1.09003 * 109.46882 * 59.99386 * 1 2 3 34 34 H 0.96998 * 120.00160 * 94.99023 * 4 2 1 35 35 H 1.08006 * 119.99635 * 0.02562 * 8 7 5 36 36 H 1.08001 * 120.00278 * 180.25406 * 9 8 7 37 37 H 0.96995 * 120.00041 * 359.97438 * 12 11 10 38 38 H 0.96996 * 119.99788 * 180.02562 * 12 11 10 39 39 H 1.08000 * 120.00046 * 179.97438 * 14 10 9 40 40 H 1.07998 * 119.99926 * 179.97438 * 15 14 10 41 41 H 1.09003 * 109.46176 * 298.70679 * 18 16 2 42 42 H 1.09007 * 109.45896 * 58.66224 * 18 16 2 43 43 H 1.09001 * 109.49447 * 181.31383 * 19 18 16 44 44 H 1.08996 * 109.49781 * 301.38576 * 19 18 16 45 45 H 1.09004 * 109.58030 * 65.15173 * 20 19 18 46 46 H 1.08993 * 109.58512 * 185.43435 * 20 19 18 47 47 H 0.97004 * 120.00103 * 179.97438 * 25 24 22 48 48 H 1.08999 * 109.59061 * 186.60427 * 30 21 20 49 49 H 1.09006 * 109.58768 * 66.17700 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8585 1.1607 2.4117 7 6 2.6401 -0.7165 3.5659 8 6 2.9660 -2.0721 3.5047 9 6 3.4301 -2.7206 4.6286 10 6 3.5629 -2.0247 5.8309 11 6 4.0555 -2.7228 7.0399 12 7 4.3752 -4.0307 6.9794 13 8 4.1716 -2.1166 8.0867 14 6 3.2320 -0.6703 5.8935 15 6 2.7734 -0.0204 4.7681 16 6 2.0399 -0.7212 -1.2493 17 1 3.1262 -0.8008 -1.2056 18 6 1.6354 0.0687 -2.4961 19 6 2.1732 -0.6345 -3.7444 20 6 1.5610 -2.0355 -3.8400 21 7 1.8217 -2.7522 -2.5843 22 6 2.4219 -3.9830 -2.5950 23 1 3.0107 -4.3041 -1.7483 24 6 2.2736 -4.8179 -3.6939 25 7 1.3133 -4.5940 -4.5657 26 14 3.4372 -6.2591 -3.9357 27 1 4.4213 -6.2926 -2.8242 28 1 2.6612 -7.5252 -3.9476 29 1 4.1537 -6.1056 -5.2273 30 6 1.4263 -2.1233 -1.3167 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.2489 -1.6319 1.1525 35 1 2.8590 -2.6117 2.5752 36 1 3.6862 -3.7687 4.5803 37 1 4.2822 -4.5146 6.1439 38 1 4.6976 -4.4883 7.7716 39 1 3.3344 -0.1318 6.8240 40 1 2.5169 1.0276 4.8166 41 1 0.5484 0.1272 -2.5522 42 1 2.0505 1.0750 -2.4390 43 1 1.9047 -0.0589 -4.6303 44 1 3.2582 -0.7148 -3.6777 45 1 0.4856 -1.9543 -3.9980 46 1 2.0128 -2.5756 -4.6720 47 1 1.2099 -5.1773 -5.3339 48 1 1.7909 -2.7222 -0.4822 49 1 0.3398 -2.0492 -1.2688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025619842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:54 Heat of formation + Delta-G solvation = -35.935490 kcal Electronic energy + Delta-G solvation = -30032.547324 eV Core-core repulsion = 25959.453743 eV Total energy + Delta-G solvation = -4073.093581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.75141 -39.91063 -38.50212 -37.69688 -35.29589 -34.29086 -33.22688 -32.02539 -31.26560 -30.54290 -30.51326 -28.13322 -25.55555 -25.36596 -23.82756 -22.90980 -22.31726 -21.63196 -20.66293 -20.11979 -18.98938 -18.55398 -17.78180 -17.17145 -16.68565 -16.14510 -15.46362 -15.27401 -15.11025 -15.02342 -14.85233 -14.62281 -14.43072 -14.02576 -13.91704 -13.79426 -13.49907 -13.18414 -12.91096 -12.73322 -12.48131 -12.39799 -12.30206 -11.85593 -11.67826 -11.51402 -11.06100 -10.98216 -10.63405 -10.54765 -10.52367 -10.23855 -10.19715 -10.16244 -10.01674 -9.92111 -9.66122 -9.45040 -9.43708 -9.42018 -8.98913 -8.52952 -6.72668 -5.85648 -3.28811 0.11099 0.94744 2.16932 2.93965 3.02614 3.08175 3.30760 3.38821 3.40298 3.59505 4.25780 4.32480 4.41517 4.49946 4.62896 4.89119 4.97264 5.01015 5.17083 5.26354 5.33869 5.37353 5.51907 5.54392 5.63870 5.65837 5.76105 5.81130 5.85855 5.93434 5.96247 6.09889 6.17206 6.20396 6.28533 6.30380 6.38050 6.43118 6.51999 6.57491 6.65636 6.72353 6.82022 6.85850 6.92061 7.34765 7.47613 7.62000 7.71849 7.79088 8.12935 8.37721 9.13953 9.77605 10.34434 11.22442 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.002716 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.688803 B =10307.181107 C =12631.352495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.149 3.851 3 H 0.084 0.916 4 N -0.712 5.712 5 C 0.554 3.446 6 O -0.537 6.537 7 C -0.102 4.102 8 C -0.093 4.093 9 C -0.092 4.092 10 C -0.121 4.121 11 C 0.564 3.436 12 N -0.850 5.850 13 O -0.538 6.538 14 C -0.067 4.067 15 C -0.069 4.069 16 C -0.114 4.114 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.254 4.254 23 H 0.064 0.936 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.278 1.278 28 H -0.290 1.290 29 H -0.289 1.289 30 C 0.152 3.848 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.403 0.597 38 H 0.406 0.594 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.045 0.955 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 4.416 16.008 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.340 3.660 6 O -0.415 6.415 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.110 4.110 10 C -0.124 4.124 11 C 0.349 3.651 12 N -0.414 5.414 13 O -0.415 6.415 14 C -0.086 4.086 15 C -0.088 4.088 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.203 1.203 28 H -0.217 1.217 29 H -0.215 1.215 30 C 0.025 3.975 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.238 0.762 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.233 0.767 38 H 0.237 0.763 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.868 5.672 16.447 17.633 hybrid contribution 0.780 -1.825 -0.428 2.031 sum 3.648 3.846 16.019 16.873 Atomic orbital electron populations 1.22262 0.95232 1.02819 1.02029 1.21090 0.94304 0.96813 0.83309 0.89823 1.46143 1.66208 1.14401 1.09603 1.18267 0.77997 0.86572 0.83167 1.90760 1.50374 1.15443 1.84954 1.20286 1.01281 0.94285 0.94694 1.21349 0.97219 0.93516 0.99059 1.21221 0.98165 0.99919 0.91726 1.20059 1.03552 0.95276 0.93561 1.18327 0.76652 0.82050 0.88027 1.43768 1.69797 1.11060 1.16751 1.90820 1.53385 1.66228 1.31116 1.21267 0.95327 0.92935 0.99089 1.21300 0.95885 1.00991 0.90636 1.21970 1.00938 0.98061 0.92468 0.90926 1.21420 1.00561 0.97228 0.94645 1.22180 1.00601 0.99578 0.95804 1.20784 0.96621 0.88013 0.90185 1.44015 1.69892 1.17482 0.99917 1.19173 1.23455 0.92026 1.03732 0.91795 1.25042 0.97356 0.97648 0.99487 1.70043 1.30199 1.39513 1.14685 0.86259 0.80608 0.82261 0.77825 1.20292 1.21728 1.21547 1.20993 0.96225 0.90296 0.89999 0.91518 0.92820 0.91275 0.76172 0.84474 0.84856 0.76709 0.76274 0.83929 0.83766 0.92194 0.93488 0.93195 0.92804 0.96433 0.89618 0.93639 0.93628 0.95582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.76 37.16 0.33 -1.87 16 2 C 0.15 2.04 2.35 -67.93 -0.16 1.88 16 3 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 4 N -0.71 -8.85 4.96 -54.69 -0.27 -9.13 16 5 C 0.55 7.31 7.74 -12.24 -0.09 7.21 16 6 O -0.54 -8.72 16.00 5.35 0.09 -8.63 16 7 C -0.10 -1.11 5.88 -104.89 -0.62 -1.72 16 8 C -0.09 -0.81 9.53 -39.25 -0.37 -1.18 16 9 C -0.09 -0.68 9.53 -39.25 -0.37 -1.05 16 10 C -0.12 -1.09 5.88 -104.90 -0.62 -1.71 16 11 C 0.56 5.31 8.05 -12.24 -0.10 5.22 16 12 N -0.85 -4.57 8.82 30.57 0.27 -4.30 16 13 O -0.54 -7.11 17.17 5.35 0.09 -7.02 16 14 C -0.07 -0.65 9.58 -39.25 -0.38 -1.03 16 15 C -0.07 -0.71 9.58 -39.24 -0.38 -1.09 16 16 C -0.11 -1.76 2.27 -90.50 -0.21 -1.97 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.57 4.89 -26.69 -0.13 -1.70 16 19 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 20 C 0.17 3.84 5.30 -3.71 -0.02 3.83 16 21 N -0.59 -13.73 2.99 -172.32 -0.52 -14.25 16 22 C -0.25 -6.54 9.58 -15.06 -0.14 -6.68 16 23 H 0.06 1.59 7.89 -52.48 -0.41 1.18 16 24 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 25 N -0.90 -25.16 11.19 55.49 0.62 -24.54 16 26 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.15 2.80 5.26 -3.71 -0.02 2.78 16 31 H 0.07 0.91 6.23 -51.93 -0.32 0.58 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.88 6.60 -51.93 -0.34 0.54 16 34 H 0.40 4.44 5.30 -40.82 -0.22 4.22 16 35 H 0.14 1.00 6.39 -52.48 -0.34 0.66 16 36 H 0.13 0.56 6.39 -52.49 -0.34 0.22 16 37 H 0.40 1.14 6.85 -40.82 -0.28 0.86 16 38 H 0.41 1.69 8.93 -40.82 -0.36 1.33 16 39 H 0.14 1.31 7.64 -52.49 -0.40 0.91 16 40 H 0.14 1.46 7.64 -52.49 -0.40 1.05 16 41 H 0.06 0.93 6.63 -51.93 -0.34 0.58 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.05 0.79 6.75 -51.93 -0.35 0.44 16 49 H 0.03 0.50 6.06 -51.93 -0.31 0.18 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -33.12 387.31 -9.24 -42.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.80 Total: 5.83 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.53 Total: -1.82 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.10 Total: -52.21 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.18 Total: -15.65 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.12 -9.24 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025619842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.424 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds