Wall clock time and date at job start Wed Apr 1 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47805 * 2 1 4 4 N 1.46501 * 109.47423 * 120.00583 * 2 1 3 5 5 C 1.34771 * 119.99611 * 275.00058 * 4 2 1 6 6 O 1.21521 * 120.00524 * 359.97438 * 5 4 2 7 7 C 1.48042 * 119.99895 * 179.97438 * 5 4 2 8 8 C 1.39555 * 119.99937 * 359.72317 * 7 5 4 9 9 C 1.37813 * 120.00012 * 179.73922 * 8 7 5 10 10 C 1.39554 * 119.99910 * 0.56067 * 9 8 7 11 11 C 1.48038 * 120.00309 * 179.72095 * 10 9 8 12 12 N 1.34783 * 119.99500 * 359.97438 * 11 10 9 13 13 O 1.21520 * 120.00282 * 179.97438 * 11 10 9 14 14 C 1.39556 * 120.00138 * 359.68968 * 10 9 8 15 15 C 1.37814 * 119.99772 * 0.03334 * 14 10 9 16 16 C 1.53000 * 109.46905 * 240.00383 * 2 1 3 17 17 H 1.09006 * 109.50078 * 185.07002 * 16 2 1 18 18 C 1.53037 * 109.50250 * 65.00037 * 16 2 1 19 19 C 1.53041 * 109.54218 * 178.68146 * 18 16 2 20 20 C 1.53196 * 109.31024 * 61.36679 * 19 18 16 21 21 N 1.46918 * 108.77545 * 305.36614 * 20 19 18 22 22 C 1.36937 * 120.63145 * 233.60861 * 21 20 19 23 23 H 1.08006 * 120.00233 * 151.84237 * 22 21 20 24 24 C 1.38811 * 119.99874 * 331.84324 * 22 21 20 25 25 N 1.31622 * 120.00017 * 343.06974 * 24 22 21 26 26 Si 1.86801 * 120.00107 * 163.06158 * 24 22 21 27 27 H 1.48498 * 109.46873 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46916 * 120.00383 * 26 24 22 29 29 H 1.48496 * 109.47235 * 240.00360 * 26 24 22 30 30 C 1.46925 * 118.74254 * 53.60721 * 21 20 19 31 31 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47004 * 300.00272 * 1 2 3 33 33 H 1.09003 * 109.46882 * 59.99386 * 1 2 3 34 34 H 0.96998 * 120.00160 * 94.99023 * 4 2 1 35 35 H 1.08006 * 119.99635 * 0.02562 * 8 7 5 36 36 H 1.08001 * 120.00278 * 180.25406 * 9 8 7 37 37 H 0.96995 * 120.00041 * 359.97438 * 12 11 10 38 38 H 0.96996 * 119.99788 * 180.02562 * 12 11 10 39 39 H 1.08000 * 120.00046 * 179.97438 * 14 10 9 40 40 H 1.07998 * 119.99926 * 179.97438 * 15 14 10 41 41 H 1.09003 * 109.46176 * 298.70679 * 18 16 2 42 42 H 1.09007 * 109.45896 * 58.66224 * 18 16 2 43 43 H 1.09001 * 109.49447 * 181.31383 * 19 18 16 44 44 H 1.08996 * 109.49781 * 301.38576 * 19 18 16 45 45 H 1.09004 * 109.58030 * 65.15173 * 20 19 18 46 46 H 1.08993 * 109.58512 * 185.43435 * 20 19 18 47 47 H 0.97004 * 120.00103 * 179.97438 * 25 24 22 48 48 H 1.08999 * 109.59061 * 186.60427 * 30 21 20 49 49 H 1.09006 * 109.58768 * 66.17700 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8585 1.1607 2.4117 7 6 2.6401 -0.7165 3.5659 8 6 2.9660 -2.0721 3.5047 9 6 3.4301 -2.7206 4.6286 10 6 3.5629 -2.0247 5.8309 11 6 4.0555 -2.7228 7.0399 12 7 4.3752 -4.0307 6.9794 13 8 4.1716 -2.1166 8.0867 14 6 3.2320 -0.6703 5.8935 15 6 2.7734 -0.0204 4.7681 16 6 2.0399 -0.7212 -1.2493 17 1 3.1262 -0.8008 -1.2056 18 6 1.6354 0.0687 -2.4961 19 6 2.1732 -0.6345 -3.7444 20 6 1.5610 -2.0355 -3.8400 21 7 1.8217 -2.7522 -2.5843 22 6 2.4219 -3.9830 -2.5950 23 1 3.0107 -4.3041 -1.7483 24 6 2.2736 -4.8179 -3.6939 25 7 1.3133 -4.5940 -4.5657 26 14 3.4372 -6.2591 -3.9357 27 1 4.4213 -6.2926 -2.8242 28 1 2.6612 -7.5252 -3.9476 29 1 4.1537 -6.1056 -5.2273 30 6 1.4263 -2.1233 -1.3167 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 2.2489 -1.6319 1.1525 35 1 2.8590 -2.6117 2.5752 36 1 3.6862 -3.7687 4.5803 37 1 4.2822 -4.5146 6.1439 38 1 4.6976 -4.4883 7.7716 39 1 3.3344 -0.1318 6.8240 40 1 2.5169 1.0276 4.8166 41 1 0.5484 0.1272 -2.5522 42 1 2.0505 1.0750 -2.4390 43 1 1.9047 -0.0589 -4.6303 44 1 3.2582 -0.7148 -3.6777 45 1 0.4856 -1.9543 -3.9980 46 1 2.0128 -2.5756 -4.6720 47 1 1.2099 -5.1773 -5.3339 48 1 1.7909 -2.7222 -0.4822 49 1 0.3398 -2.0492 -1.2688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025619842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:52 Heat of formation + Delta-G solvation = -58.682458 kcal Electronic energy + Delta-G solvation = -30033.533707 eV Core-core repulsion = 25959.453743 eV Total energy + Delta-G solvation = -4074.079964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61420 -40.82834 -39.67132 -38.71715 -36.69096 -34.95442 -34.73619 -33.14427 -32.25930 -31.96706 -31.61168 -29.43875 -27.18851 -26.43061 -25.00138 -23.87563 -23.64493 -22.69886 -21.85586 -21.09538 -20.21586 -19.42139 -18.77961 -18.41768 -17.84291 -17.15605 -16.81248 -16.26866 -16.16111 -15.93539 -15.90986 -15.73535 -15.60303 -15.36731 -15.05761 -14.74126 -14.68778 -14.54685 -14.07720 -13.92517 -13.81964 -13.55262 -13.40925 -13.26920 -13.01465 -12.77384 -12.67598 -12.22802 -12.20565 -12.01648 -11.91006 -11.67294 -11.48646 -11.36554 -11.26665 -11.05446 -10.94907 -10.77855 -10.49137 -10.27636 -10.12631 -9.98871 -8.61244 -7.82518 -5.27601 -0.65685 0.26082 1.35796 1.48809 1.51966 1.60887 2.07605 2.08605 2.44054 2.54443 2.82187 3.32871 3.51192 3.62209 3.68154 3.83438 3.90670 3.97204 4.01944 4.07566 4.20309 4.28694 4.37385 4.43735 4.49739 4.57403 4.68296 4.72940 4.86743 4.89362 4.91104 4.99421 5.05658 5.07647 5.16035 5.17992 5.22257 5.23304 5.32205 5.37816 5.47781 5.52740 5.62070 5.65403 5.72002 5.82774 5.82987 6.35186 6.43343 6.48801 7.12794 7.19458 7.21837 7.91566 8.43519 9.23747 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.002716 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.688803 B =10307.181107 C =12631.352495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.081 0.919 4 N -0.706 5.706 5 C 0.555 3.445 6 O -0.573 6.573 7 C -0.117 4.117 8 C -0.089 4.089 9 C -0.078 4.078 10 C -0.124 4.124 11 C 0.561 3.439 12 N -0.827 5.827 13 O -0.584 6.584 14 C -0.075 4.075 15 C -0.076 4.076 16 C -0.097 4.097 17 H 0.068 0.932 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.608 5.608 22 C -0.256 4.256 23 H 0.073 0.927 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.962 3.038 27 H -0.261 1.261 28 H -0.295 1.295 29 H -0.297 1.297 30 C 0.150 3.850 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.410 0.590 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.418 0.582 38 H 0.415 0.585 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.049 0.951 45 H -0.005 1.005 46 H 0.049 0.951 47 H 0.247 0.753 48 H 0.058 0.942 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 3.575 17.084 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.099 0.901 4 N -0.358 5.358 5 C 0.343 3.657 6 O -0.453 6.453 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.097 4.097 10 C -0.127 4.127 11 C 0.347 3.653 12 N -0.391 5.391 13 O -0.465 6.465 14 C -0.094 4.094 15 C -0.095 4.095 16 C -0.118 4.118 17 H 0.087 0.913 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.331 5.331 22 C -0.386 4.386 23 H 0.091 0.909 24 C -0.248 4.248 25 N -0.583 5.583 26 Si 0.791 3.209 27 H -0.185 1.185 28 H -0.223 1.223 29 H -0.224 1.224 30 C 0.025 3.975 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.173 0.827 36 H 0.190 0.810 37 H 0.251 0.749 38 H 0.247 0.753 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.013 0.987 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.985 4.787 17.534 18.607 hybrid contribution 0.423 -1.595 -0.723 1.802 sum 4.408 3.192 16.810 17.669 Atomic orbital electron populations 1.22210 0.94839 1.02559 1.02210 1.20893 0.94446 0.96404 0.82879 0.90099 1.46048 1.65895 1.14702 1.09122 1.18583 0.77217 0.86172 0.83742 1.90740 1.52035 1.17037 1.85526 1.20175 1.02792 0.95336 0.93690 1.21560 0.96435 0.92545 1.00236 1.21569 0.96352 1.01483 0.90253 1.20172 1.03288 0.95059 0.94207 1.18419 0.76452 0.82999 0.87400 1.43608 1.67865 1.09701 1.17944 1.90805 1.55628 1.67458 1.32610 1.21289 0.95667 0.93640 0.98789 1.21259 0.96430 1.00900 0.90904 1.21744 1.00344 0.96277 0.93437 0.91336 1.21417 1.00864 0.98156 0.93201 1.22012 0.99927 0.97036 0.98059 1.20594 0.95187 0.90175 0.89224 1.44278 1.70093 1.17268 1.01502 1.19575 1.22791 0.92610 1.03611 0.90895 1.25770 0.98859 1.00396 0.99752 1.70199 1.32122 1.40713 1.15255 0.85284 0.78888 0.79109 0.77636 1.18509 1.22260 1.22384 1.21139 0.96239 0.91833 0.88294 0.91919 0.93089 0.90690 0.75220 0.82719 0.81004 0.74889 0.75281 0.84175 0.84416 0.91843 0.90883 0.91503 0.93227 0.98683 0.93274 0.94362 0.92398 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 8.76 71.98 0.63 -3.35 16 2 C 0.16 4.02 2.35 44.99 0.11 4.12 16 3 H 0.08 2.18 7.58 -2.39 -0.02 2.17 16 4 N -0.71 -16.17 4.96 -445.24 -2.21 -18.38 16 5 C 0.55 14.00 7.74 86.85 0.67 14.67 16 6 O -0.57 -18.36 16.00 -3.78 -0.06 -18.42 16 7 C -0.12 -2.37 5.88 -20.04 -0.12 -2.49 16 8 C -0.09 -1.29 9.53 22.49 0.21 -1.08 16 9 C -0.08 -0.89 9.53 22.49 0.21 -0.68 16 10 C -0.12 -1.99 5.88 -20.04 -0.12 -2.11 16 11 C 0.56 9.58 8.05 86.84 0.70 10.28 16 12 N -0.83 -6.44 8.82 -175.47 -1.55 -7.99 16 13 O -0.58 -15.14 17.17 -3.78 -0.06 -15.20 16 14 C -0.07 -1.41 9.58 22.49 0.22 -1.20 16 15 C -0.08 -1.54 9.58 22.49 0.22 -1.33 16 16 C -0.10 -2.82 2.27 -10.72 -0.02 -2.84 16 17 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 18 C -0.10 -2.86 4.89 30.62 0.15 -2.71 16 19 C -0.13 -4.59 6.08 30.67 0.19 -4.41 16 20 C 0.17 7.97 5.30 86.37 0.46 8.43 16 21 N -0.61 -27.99 2.99 -699.09 -2.09 -30.08 16 22 C -0.26 -12.97 9.58 84.03 0.81 -12.16 16 23 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 24 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 25 N -0.94 -53.59 11.19 21.65 0.24 -53.35 16 26 Si 0.96 42.50 29.59 68.60 2.03 44.53 16 27 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 28 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 29 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 30 C 0.15 5.31 5.26 86.36 0.45 5.77 16 31 H 0.06 1.60 6.23 -2.39 -0.01 1.59 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.77 6.60 -2.39 -0.02 1.75 16 34 H 0.41 7.97 5.30 -92.71 -0.49 7.48 16 35 H 0.16 1.67 6.39 -2.91 -0.02 1.65 16 36 H 0.17 0.55 6.39 -2.91 -0.02 0.53 16 37 H 0.42 0.65 6.85 -92.71 -0.64 0.01 16 38 H 0.41 2.34 8.93 -92.71 -0.83 1.52 16 39 H 0.14 2.64 7.64 -2.91 -0.02 2.62 16 40 H 0.14 2.88 7.64 -2.91 -0.02 2.86 16 41 H 0.06 1.82 6.63 -2.39 -0.02 1.81 16 42 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 46 H 0.05 2.60 6.06 -2.39 -0.01 2.59 16 47 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 48 H 0.06 1.87 6.75 -2.39 -0.02 1.86 16 49 H 0.02 0.85 6.06 -2.38 -0.01 0.84 16 Total: -1.00 -73.47 387.31 0.54 -72.94 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.94 Total: 19.40 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.18 Total: 6.56 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -5.61 Total: -109.80 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.13 Total: -33.62 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.47 0.54 -72.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025619842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.253 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds