Wall clock time and date at job start Wed Apr 1 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46736 * 2 1 4 4 C 1.52996 * 109.47409 * 239.99578 * 2 1 3 5 5 C 1.50710 * 109.46859 * 64.99669 * 4 2 1 6 6 O 1.21280 * 119.99802 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99627 * 179.97438 * 5 4 2 8 8 C 1.47131 * 121.06297 * 359.97438 * 7 5 4 9 9 C 1.53223 * 108.72910 * 127.72396 * 8 7 5 10 10 O 1.43115 * 109.35545 * 54.19200 * 9 8 7 11 11 C 1.42357 * 113.99425 * 300.22452 * 10 9 8 12 12 C 1.52923 * 114.29526 * 285.04832 * 11 10 9 13 13 N 1.47161 * 87.84547 * 271.71962 * 12 11 10 14 14 C 1.36932 * 135.99916 * 153.32713 * 13 12 11 15 15 H 1.08005 * 119.99702 * 9.80860 * 14 13 12 16 16 C 1.38812 * 120.00174 * 189.81274 * 14 13 12 17 17 N 1.31619 * 120.00173 * 203.03262 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 23.03052 * 16 14 13 19 19 H 1.48506 * 109.46911 * 270.00306 * 18 16 14 20 20 H 1.48504 * 109.47325 * 29.99773 * 18 16 14 21 21 H 1.48493 * 109.47453 * 150.00462 * 18 16 14 22 22 C 1.47176 * 87.99852 * 333.58054 * 13 12 11 23 23 C 1.47356 * 121.05713 * 179.97438 * 7 5 4 24 24 C 1.50702 * 109.47047 * 119.99344 * 2 1 3 25 25 C 1.38656 * 120.78942 * 59.72509 * 24 2 1 26 26 C 1.38200 * 119.16240 * 179.75465 * 25 24 2 27 27 N 1.31871 * 120.76446 * 0.52660 * 26 25 24 28 28 C 1.31875 * 121.72761 * 359.74551 * 27 26 25 29 29 C 1.38207 * 120.76229 * 359.97438 * 28 27 26 30 30 H 1.08989 * 109.46982 * 60.00491 * 1 2 3 31 31 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46997 * 300.00043 * 1 2 3 33 33 H 1.09001 * 109.47238 * 305.00240 * 4 2 1 34 34 H 1.08994 * 109.47561 * 184.99759 * 4 2 1 35 35 H 1.09004 * 109.58915 * 247.49750 * 8 7 5 36 36 H 1.08997 * 109.59426 * 7.94858 * 8 7 5 37 37 H 1.08997 * 109.49358 * 174.15890 * 9 8 7 38 38 H 1.09003 * 109.49228 * 294.22945 * 9 8 7 39 39 H 1.09002 * 113.48695 * 156.97331 * 12 11 10 40 40 H 1.09002 * 113.48902 * 26.46758 * 12 11 10 41 41 H 0.96997 * 119.99623 * 354.66306 * 17 16 14 42 42 H 1.09002 * 113.48842 * 141.17433 * 22 13 12 43 43 H 1.09002 * 113.48977 * 271.67770 * 22 13 12 44 44 H 1.09001 * 109.74547 * 108.59585 * 23 7 5 45 45 H 1.09002 * 109.78852 * 347.89114 * 23 7 5 46 46 H 1.08000 * 120.41280 * 359.97438 * 25 24 2 47 47 H 1.07999 * 119.61703 * 180.25519 * 26 25 24 48 48 H 1.07999 * 119.62049 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.42014 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3916 -3.7001 8 6 2.7505 -1.6375 -3.8644 9 6 2.0126 -2.5405 -4.8584 10 8 1.7805 -1.8193 -6.0725 11 6 0.9986 -0.6414 -5.9056 12 6 -0.4924 -0.9016 -5.6871 13 7 -0.6542 -0.8780 -7.1496 14 6 -1.5240 -1.4272 -8.0534 15 1 -2.4213 -1.9197 -7.7086 16 6 -1.2525 -1.3510 -9.4125 17 7 -2.2326 -1.4471 -10.2858 18 14 0.5038 -1.1120 -10.0022 19 1 0.7946 0.3399 -10.1154 20 1 1.4408 -1.7301 -9.0300 21 1 0.6721 -1.7555 -11.3298 22 6 0.5329 -0.0104 -7.2151 23 6 1.6073 0.3503 -4.9158 24 6 2.0324 -0.7103 1.2306 25 6 1.7028 -2.0358 1.4692 26 6 2.1861 -2.6557 2.6059 27 7 2.9431 -1.9985 3.4626 28 6 3.2721 -0.7359 3.2708 29 6 2.8305 -0.0522 2.1539 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6055 -1.7199 -1.2950 34 1 3.1264 -0.7995 -1.2055 35 1 3.7448 -1.4080 -4.2475 36 1 2.8347 -2.1443 -2.9031 37 1 2.6190 -3.4214 -5.0689 38 1 1.0587 -2.8490 -4.4306 39 1 -1.0061 -0.0850 -5.1798 40 1 -0.7030 -1.8742 -5.2423 41 1 -3.1324 -1.6483 -9.9847 42 1 1.1865 -0.2315 -8.0589 43 1 0.3006 1.0510 -7.1276 44 1 2.4913 0.8129 -5.3548 45 1 0.8751 1.1183 -4.6667 46 1 1.0792 -2.5779 0.7738 47 1 1.9374 -3.6892 2.7969 48 1 3.8937 -0.2304 3.9949 49 1 3.1035 0.9816 2.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053306767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:09 Heat of formation + Delta-G solvation = 32.319023 kcal Electronic energy + Delta-G solvation = -30762.209573 eV Core-core repulsion = 26692.075729 eV Total energy + Delta-G solvation = -4070.133843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.98587 -40.49480 -39.24789 -36.74657 -36.00132 -34.70715 -32.51335 -31.68836 -31.38574 -30.42369 -28.91418 -27.69441 -25.87748 -25.58559 -24.53413 -23.77201 -23.47896 -21.72836 -20.85678 -19.39795 -18.97595 -17.84420 -17.52423 -16.80133 -16.69458 -16.43976 -15.95011 -15.89734 -15.74710 -15.18501 -14.79442 -14.54783 -14.38532 -14.34680 -13.94491 -13.87178 -13.62992 -13.53937 -13.37555 -13.12596 -12.87866 -12.72072 -12.30659 -12.19298 -11.76861 -11.68175 -11.58243 -11.36572 -11.22804 -11.14340 -10.80914 -10.71151 -10.42205 -9.98810 -9.85749 -9.78508 -9.77229 -9.53188 -9.41222 -9.06936 -8.58533 -8.53769 -7.18540 -6.33803 -3.19954 0.75681 0.86019 2.44031 2.70909 3.43384 3.43789 3.56972 3.72811 3.77241 3.99923 4.10157 4.24643 4.47269 4.53393 4.59301 4.62573 4.67322 4.72712 4.74481 4.77391 4.79372 4.82898 5.00538 5.05482 5.14520 5.21249 5.27283 5.32681 5.39791 5.41179 5.52455 5.55199 5.56902 5.66492 5.67543 5.76592 5.81587 6.02301 6.03700 6.13776 6.14066 6.18686 6.22812 6.32291 6.33905 6.46802 7.10179 7.19887 7.49055 7.60295 7.98593 8.25072 8.96483 9.51964 10.37383 11.16586 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.002317 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.457146 B =12080.277830 C =12183.290961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.037 4.037 3 H 0.091 0.909 4 C -0.132 4.132 5 C 0.518 3.482 6 O -0.535 6.535 7 N -0.612 5.612 8 C 0.072 3.928 9 C 0.044 3.956 10 O -0.334 6.334 11 C 0.057 3.943 12 C 0.106 3.894 13 N -0.614 5.614 14 C -0.310 4.310 15 H 0.078 0.922 16 C -0.018 4.018 17 N -0.922 5.922 18 Si 1.056 2.944 19 H -0.293 1.293 20 H -0.274 1.274 21 H -0.296 1.296 22 C 0.121 3.879 23 C 0.102 3.898 24 C -0.030 4.030 25 C -0.168 4.168 26 C 0.099 3.901 27 N -0.491 5.491 28 C 0.099 3.901 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.262 0.738 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.134 0.866 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.907 0.090 25.191 28.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.056 4.056 3 H 0.110 0.890 4 C -0.172 4.172 5 C 0.306 3.694 6 O -0.412 6.412 7 N -0.346 5.346 8 C -0.051 4.051 9 C -0.033 4.033 10 O -0.251 6.251 11 C 0.015 3.985 12 C -0.021 4.021 13 N -0.342 5.342 14 C -0.436 4.436 15 H 0.096 0.904 16 C -0.218 4.218 17 N -0.563 5.563 18 Si 0.888 3.112 19 H -0.221 1.221 20 H -0.200 1.200 21 H -0.224 1.224 22 C -0.005 4.005 23 C -0.022 4.022 24 C -0.038 4.038 25 C -0.188 4.188 26 C -0.057 4.057 27 N -0.200 5.200 28 C -0.058 4.058 29 C -0.189 4.189 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.123 0.877 46 H 0.152 0.848 47 H 0.172 0.828 48 H 0.172 0.828 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.664 0.240 24.277 28.363 hybrid contribution -1.300 0.105 0.868 1.567 sum 13.364 0.345 25.145 28.478 Atomic orbital electron populations 1.21974 0.92947 1.02100 1.03723 1.19943 0.97283 0.99265 0.89105 0.89034 1.21759 1.02943 1.00340 0.92189 1.20513 0.79121 0.85663 0.84071 1.90679 1.39885 1.24661 1.85961 1.48217 1.55426 1.24830 1.06102 1.22477 0.95907 0.85575 1.01163 1.22921 0.99779 0.94423 0.86209 1.88028 1.71029 1.37154 1.28931 1.23051 0.91549 0.86514 0.97435 1.22840 0.91568 0.99271 0.88456 1.45645 1.33342 1.54154 1.01022 1.19916 1.00222 1.36210 0.87268 0.90425 1.25742 1.05507 0.99519 0.91080 1.70947 1.00959 1.48456 1.35913 0.83889 0.75909 0.76328 0.75077 1.22117 1.20011 1.22369 1.22537 0.89427 0.94800 0.93769 1.22149 1.01240 0.95095 0.83672 1.20361 0.94052 0.93901 0.95527 1.22050 1.01888 0.95341 0.99533 1.22777 0.92949 0.99976 0.90044 1.67685 1.12572 1.09275 1.30508 1.22772 0.96825 0.90401 0.95789 1.22120 0.99487 1.01611 0.95731 0.89678 0.92874 0.92619 0.88577 0.88753 0.90255 0.89034 0.87712 0.92552 0.93454 0.93723 0.92799 0.92288 0.92338 0.90684 0.87659 0.84768 0.82773 0.82811 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.75 37.16 0.33 -1.04 16 2 C -0.04 -0.30 2.24 -91.77 -0.21 -0.50 16 3 H 0.09 0.81 7.76 -51.93 -0.40 0.40 16 4 C -0.13 -1.02 3.30 -27.88 -0.09 -1.11 16 5 C 0.52 5.96 7.43 -10.98 -0.08 5.88 16 6 O -0.53 -7.86 13.47 5.56 0.07 -7.78 16 7 N -0.61 -7.20 3.03 -172.49 -0.52 -7.72 16 8 C 0.07 0.66 6.50 -3.58 -0.02 0.64 16 9 C 0.04 0.53 6.90 37.27 0.26 0.79 16 10 O -0.33 -5.90 10.53 -35.23 -0.37 -6.27 16 11 C 0.06 1.00 1.27 -90.97 -0.12 0.89 16 12 C 0.11 2.13 7.91 -8.22 -0.07 2.07 16 13 N -0.61 -15.45 3.58 -184.98 -0.66 -16.11 16 14 C -0.31 -9.09 10.96 -15.06 -0.17 -9.26 16 15 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 16 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 17 N -0.92 -29.24 13.70 55.49 0.76 -28.48 16 18 Si 1.06 27.01 25.33 -169.99 -4.31 22.70 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.27 -6.71 6.56 56.52 0.37 -6.34 16 21 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 22 C 0.12 2.58 6.58 -8.36 -0.05 2.52 16 23 C 0.10 1.44 5.83 -3.69 -0.02 1.42 16 24 C -0.03 -0.23 4.80 -104.31 -0.50 -0.73 16 25 C -0.17 -1.18 8.90 -39.44 -0.35 -1.53 16 26 C 0.10 0.75 11.18 -17.55 -0.20 0.56 16 27 N -0.49 -4.51 10.36 -13.25 -0.14 -4.65 16 28 C 0.10 0.75 11.18 -17.54 -0.20 0.55 16 29 C -0.17 -1.20 9.76 -39.44 -0.39 -1.59 16 30 H 0.08 0.99 5.95 -51.94 -0.31 0.68 16 31 H 0.05 0.43 7.46 -51.93 -0.39 0.04 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.61 7.23 -51.93 -0.38 0.23 16 34 H 0.09 0.59 7.98 -51.93 -0.41 0.17 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.55 6.03 -51.93 -0.31 0.23 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 39 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 40 H 0.04 0.90 7.36 -51.93 -0.38 0.52 16 41 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 42 H 0.06 1.33 3.74 -51.93 -0.19 1.13 16 43 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.11 1.58 6.90 -51.93 -0.36 1.22 16 46 H 0.13 0.73 7.35 -52.49 -0.39 0.34 16 47 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 49 H 0.13 0.72 8.01 -52.49 -0.42 0.30 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -36.39 384.32 -8.63 -45.02 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.30 Total: -1.41 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.97 Total: -1.10 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.56 Total: -56.95 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.30 Total: -14.06 kcal Atomic # 14 Polarization: 27.01 SS G_CDS: -4.31 Total: 22.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.39 -8.63 -45.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053306767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.339 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds