Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46736 * 2 1 4 4 C 1.52996 * 109.47409 * 239.99578 * 2 1 3 5 5 C 1.50710 * 109.46859 * 64.99669 * 4 2 1 6 6 O 1.21280 * 119.99802 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99627 * 179.97438 * 5 4 2 8 8 C 1.47131 * 121.06297 * 359.97438 * 7 5 4 9 9 C 1.53223 * 108.72910 * 127.72396 * 8 7 5 10 10 O 1.43115 * 109.35545 * 54.19200 * 9 8 7 11 11 C 1.42357 * 113.99425 * 300.22452 * 10 9 8 12 12 C 1.52923 * 114.29526 * 285.04832 * 11 10 9 13 13 N 1.47161 * 87.84547 * 271.71962 * 12 11 10 14 14 C 1.36932 * 135.99916 * 153.32713 * 13 12 11 15 15 H 1.08005 * 119.99702 * 9.80860 * 14 13 12 16 16 C 1.38812 * 120.00174 * 189.81274 * 14 13 12 17 17 N 1.31619 * 120.00173 * 203.03262 * 16 14 13 18 18 Si 1.86798 * 119.99881 * 23.03052 * 16 14 13 19 19 H 1.48506 * 109.46911 * 270.00306 * 18 16 14 20 20 H 1.48504 * 109.47325 * 29.99773 * 18 16 14 21 21 H 1.48493 * 109.47453 * 150.00462 * 18 16 14 22 22 C 1.47176 * 87.99852 * 333.58054 * 13 12 11 23 23 C 1.47356 * 121.05713 * 179.97438 * 7 5 4 24 24 C 1.50702 * 109.47047 * 119.99344 * 2 1 3 25 25 C 1.38656 * 120.78942 * 59.72509 * 24 2 1 26 26 C 1.38200 * 119.16240 * 179.75465 * 25 24 2 27 27 N 1.31871 * 120.76446 * 0.52660 * 26 25 24 28 28 C 1.31875 * 121.72761 * 359.74551 * 27 26 25 29 29 C 1.38207 * 120.76229 * 359.97438 * 28 27 26 30 30 H 1.08989 * 109.46982 * 60.00491 * 1 2 3 31 31 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46997 * 300.00043 * 1 2 3 33 33 H 1.09001 * 109.47238 * 305.00240 * 4 2 1 34 34 H 1.08994 * 109.47561 * 184.99759 * 4 2 1 35 35 H 1.09004 * 109.58915 * 247.49750 * 8 7 5 36 36 H 1.08997 * 109.59426 * 7.94858 * 8 7 5 37 37 H 1.08997 * 109.49358 * 174.15890 * 9 8 7 38 38 H 1.09003 * 109.49228 * 294.22945 * 9 8 7 39 39 H 1.09002 * 113.48695 * 156.97331 * 12 11 10 40 40 H 1.09002 * 113.48902 * 26.46758 * 12 11 10 41 41 H 0.96997 * 119.99623 * 354.66306 * 17 16 14 42 42 H 1.09002 * 113.48842 * 141.17433 * 22 13 12 43 43 H 1.09002 * 113.48977 * 271.67770 * 22 13 12 44 44 H 1.09001 * 109.74547 * 108.59585 * 23 7 5 45 45 H 1.09002 * 109.78852 * 347.89114 * 23 7 5 46 46 H 1.08000 * 120.41280 * 359.97438 * 25 24 2 47 47 H 1.07999 * 119.61703 * 180.25519 * 26 25 24 48 48 H 1.07999 * 119.62049 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.42014 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 8 1.0117 1.0873 -2.3633 7 7 1.9854 -0.3916 -3.7001 8 6 2.7505 -1.6375 -3.8644 9 6 2.0126 -2.5405 -4.8584 10 8 1.7805 -1.8193 -6.0725 11 6 0.9986 -0.6414 -5.9056 12 6 -0.4924 -0.9016 -5.6871 13 7 -0.6542 -0.8780 -7.1496 14 6 -1.5240 -1.4272 -8.0534 15 1 -2.4213 -1.9197 -7.7086 16 6 -1.2525 -1.3510 -9.4125 17 7 -2.2326 -1.4471 -10.2858 18 14 0.5038 -1.1120 -10.0022 19 1 0.7946 0.3399 -10.1154 20 1 1.4408 -1.7301 -9.0300 21 1 0.6721 -1.7555 -11.3298 22 6 0.5329 -0.0104 -7.2151 23 6 1.6073 0.3503 -4.9158 24 6 2.0324 -0.7103 1.2306 25 6 1.7028 -2.0358 1.4692 26 6 2.1861 -2.6557 2.6059 27 7 2.9431 -1.9985 3.4626 28 6 3.2721 -0.7359 3.2708 29 6 2.8305 -0.0522 2.1539 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6055 -1.7199 -1.2950 34 1 3.1264 -0.7995 -1.2055 35 1 3.7448 -1.4080 -4.2475 36 1 2.8347 -2.1443 -2.9031 37 1 2.6190 -3.4214 -5.0689 38 1 1.0587 -2.8490 -4.4306 39 1 -1.0061 -0.0850 -5.1798 40 1 -0.7030 -1.8742 -5.2423 41 1 -3.1324 -1.6483 -9.9847 42 1 1.1865 -0.2315 -8.0589 43 1 0.3006 1.0510 -7.1276 44 1 2.4913 0.8129 -5.3548 45 1 0.8751 1.1183 -4.6667 46 1 1.0792 -2.5779 0.7738 47 1 1.9374 -3.6892 2.7969 48 1 3.8937 -0.2304 3.9949 49 1 3.1035 0.9816 2.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053306767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = 6.565989 kcal Electronic energy + Delta-G solvation = -30763.326308 eV Core-core repulsion = 26692.075729 eV Total energy + Delta-G solvation = -4071.250579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.99923 -41.23685 -40.32916 -38.06417 -36.69814 -35.77651 -34.63801 -32.33250 -32.04516 -31.57329 -29.79338 -29.09288 -27.29259 -27.07429 -25.19068 -24.53954 -24.29875 -23.27335 -21.74012 -20.71658 -19.94517 -19.59847 -18.58151 -17.92184 -17.49540 -17.29679 -17.01304 -16.73159 -16.44095 -16.27410 -16.21844 -15.80104 -15.47793 -15.17519 -15.05915 -14.98602 -14.90643 -14.57188 -14.36528 -14.13545 -13.98163 -13.52353 -13.47728 -13.22335 -12.86048 -12.76485 -12.70737 -12.61976 -12.43994 -12.25090 -12.10464 -11.82388 -11.74165 -11.56858 -11.22783 -10.87412 -10.78432 -10.65920 -10.46164 -10.35268 -10.02925 -9.60680 -9.25060 -8.69480 -5.47481 0.26019 0.32186 1.38487 1.53151 1.59560 1.73223 1.83926 2.50897 2.54905 2.82350 2.91177 3.19252 3.30301 3.40225 3.64693 3.67325 3.69170 3.83148 3.95045 4.04764 4.11900 4.16933 4.24761 4.26595 4.28475 4.34058 4.44714 4.48605 4.50516 4.57909 4.59658 4.63583 4.66688 4.72310 4.78181 4.80950 4.89685 4.92313 4.95600 4.95983 5.09563 5.14547 5.16687 5.29274 5.39153 5.51936 5.83728 5.91667 6.25558 6.35899 6.64707 7.09049 7.12817 7.29909 8.24117 8.82735 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.002317 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.457146 B =12080.277830 C =12183.290961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.030 4.030 3 H 0.082 0.918 4 C -0.125 4.125 5 C 0.515 3.485 6 O -0.572 6.572 7 N -0.615 5.615 8 C 0.077 3.923 9 C 0.034 3.966 10 O -0.365 6.365 11 C 0.087 3.913 12 C 0.104 3.896 13 N -0.648 5.648 14 C -0.300 4.300 15 H 0.043 0.957 16 C -0.076 4.076 17 N -0.956 5.956 18 Si 1.102 2.898 19 H -0.273 1.273 20 H -0.258 1.258 21 H -0.300 1.300 22 C 0.107 3.893 23 C 0.111 3.889 24 C -0.035 4.035 25 C -0.167 4.167 26 C 0.088 3.912 27 N -0.519 5.519 28 C 0.088 3.912 29 C -0.172 4.172 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.041 0.959 41 H 0.247 0.753 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.152 0.848 47 H 0.172 0.828 48 H 0.172 0.828 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -0.223 27.368 32.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 H 0.100 0.900 4 C -0.164 4.164 5 C 0.305 3.695 6 O -0.451 6.451 7 N -0.348 5.348 8 C -0.045 4.045 9 C -0.042 4.042 10 O -0.283 6.283 11 C 0.045 3.955 12 C -0.022 4.022 13 N -0.376 5.376 14 C -0.427 4.427 15 H 0.061 0.939 16 C -0.270 4.270 17 N -0.600 5.600 18 Si 0.927 3.073 19 H -0.199 1.199 20 H -0.183 1.183 21 H -0.228 1.228 22 C -0.018 4.018 23 C -0.013 4.013 24 C -0.043 4.043 25 C -0.186 4.186 26 C -0.068 4.068 27 N -0.229 5.229 28 C -0.068 4.068 29 C -0.192 4.192 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.169 0.831 47 H 0.189 0.811 48 H 0.189 0.811 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 17.960 -0.076 26.522 32.031 hybrid contribution -2.407 0.162 0.341 2.436 sum 15.554 0.086 26.863 31.041 Atomic orbital electron populations 1.21917 0.94050 1.02292 1.02260 1.19809 0.96248 0.99031 0.89763 0.89994 1.21802 1.04580 1.00382 0.89652 1.21184 0.78113 0.85383 0.84778 1.90679 1.41453 1.26527 1.86470 1.48312 1.55620 1.25549 1.05327 1.22655 0.95482 0.83965 1.02394 1.23298 1.00412 0.95451 0.85071 1.87966 1.70604 1.37363 1.32411 1.22540 0.90007 0.87245 0.95705 1.22991 0.94282 0.99206 0.85687 1.45769 1.33816 1.55224 1.02814 1.19770 0.99651 1.34889 0.88422 0.93920 1.27029 1.08349 0.99953 0.91638 1.71052 1.00781 1.51559 1.36574 0.83311 0.71817 0.77560 0.74569 1.19917 1.18337 1.22835 1.22812 0.87826 0.95350 0.95796 1.21857 1.01515 0.93865 0.84101 1.20326 0.94433 0.94176 0.95344 1.22218 1.01636 0.95172 0.99591 1.23131 0.92733 1.00863 0.90071 1.67696 1.13549 1.10171 1.31502 1.23111 0.97067 0.90191 0.96413 1.22309 0.99174 1.02292 0.95425 0.92400 0.91836 0.92780 0.86435 0.86201 0.88564 0.85057 0.85034 0.93366 0.92951 0.94031 0.94334 0.92975 0.90632 0.88821 0.88797 0.83057 0.81075 0.81109 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.75 71.98 0.63 -1.84 16 2 C -0.03 -0.40 2.24 -11.54 -0.03 -0.43 16 3 H 0.08 1.29 7.76 -2.39 -0.02 1.27 16 4 C -0.12 -1.42 3.30 29.85 0.10 -1.32 16 5 C 0.51 10.35 7.43 87.66 0.65 11.00 16 6 O -0.57 -16.03 13.47 -3.03 -0.04 -16.07 16 7 N -0.61 -12.31 3.03 -818.02 -2.48 -14.78 16 8 C 0.08 1.03 6.50 86.33 0.56 1.59 16 9 C 0.03 0.70 6.90 72.06 0.50 1.20 16 10 O -0.36 -11.96 10.53 -148.98 -1.57 -13.53 16 11 C 0.09 2.92 1.27 -11.02 -0.01 2.91 16 12 C 0.10 4.18 7.91 83.31 0.66 4.83 16 13 N -0.65 -32.78 3.58 -740.03 -2.65 -35.43 16 14 C -0.30 -18.14 10.96 84.03 0.92 -17.22 16 15 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 16 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 17 N -0.96 -62.76 13.70 21.65 0.30 -62.47 16 18 Si 1.10 54.92 25.33 68.60 1.74 56.66 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.26 -12.05 6.56 99.48 0.65 -11.40 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 22 C 0.11 4.44 6.58 83.22 0.55 4.99 16 23 C 0.11 2.86 5.83 86.14 0.50 3.36 16 24 C -0.03 -0.42 4.80 -19.66 -0.09 -0.51 16 25 C -0.17 -1.81 8.90 22.36 0.20 -1.61 16 26 C 0.09 1.13 11.18 84.68 0.95 2.07 16 27 N -0.52 -8.56 10.36 -195.84 -2.03 -10.59 16 28 C 0.09 1.16 11.18 84.68 0.95 2.11 16 29 C -0.17 -2.03 9.76 22.36 0.22 -1.81 16 30 H 0.06 1.31 5.95 -2.39 -0.01 1.30 16 31 H 0.06 0.89 7.46 -2.39 -0.02 0.88 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.12 0.89 7.23 -2.39 -0.02 0.87 16 34 H 0.12 0.84 7.98 -2.39 -0.02 0.82 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 0.74 6.03 -2.39 -0.01 0.73 16 37 H 0.13 1.96 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.06 7.30 -2.39 -0.02 1.04 16 39 H 0.05 2.05 7.93 -2.39 -0.02 2.04 16 40 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 41 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 42 H 0.05 2.24 3.74 -2.39 -0.01 2.24 16 43 H 0.08 2.86 8.09 -2.39 -0.02 2.85 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.09 2.67 6.90 -2.39 -0.02 2.66 16 46 H 0.15 1.05 7.35 -2.91 -0.02 1.03 16 47 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 48 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 49 H 0.15 1.24 8.01 -2.91 -0.02 1.22 16 Total: -1.00 -82.97 384.32 1.85 -81.12 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.86 Total: 9.99 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 7.71 Total: 5.09 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.86 Total: -123.27 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.61 Total: -29.60 kcal Atomic # 14 Polarization: 54.92 SS G_CDS: 1.74 Total: 56.66 kcal Total: -82.97 1.85 -81.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053306767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.687 kcal (2) G-P(sol) polarization free energy of solvation -82.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds