Wall clock time and date at job start Wed Apr 1 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.53008 * 109.47073 * 120.00087 * 2 1 3 5 5 C 1.50696 * 109.46777 * 294.99973 * 4 2 1 6 6 O 1.21283 * 120.00496 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.47130 * 121.06393 * 359.97438 * 7 5 4 9 9 C 1.53213 * 108.73241 * 127.72433 * 8 7 5 10 10 O 1.43116 * 109.35145 * 54.19675 * 9 8 7 11 11 C 1.42348 * 113.99623 * 300.22304 * 10 9 8 12 12 C 1.52924 * 114.29758 * 285.05261 * 11 10 9 13 13 N 1.47165 * 87.84689 * 271.71878 * 12 11 10 14 14 C 1.36929 * 136.00440 * 153.32201 * 13 12 11 15 15 H 1.08007 * 120.00060 * 4.15983 * 14 13 12 16 16 C 1.38814 * 120.00317 * 184.15508 * 14 13 12 17 17 N 1.31620 * 119.99910 * 6.13783 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 186.14479 * 16 14 13 19 19 H 1.48500 * 109.46437 * 265.02547 * 18 16 14 20 20 H 1.48496 * 109.47166 * 25.02250 * 18 16 14 21 21 H 1.48496 * 109.46910 * 145.02723 * 18 16 14 22 22 C 1.47187 * 87.99625 * 333.57747 * 13 12 11 23 23 C 1.47361 * 121.06281 * 180.02562 * 7 5 4 24 24 C 1.50705 * 109.47403 * 239.99795 * 2 1 3 25 25 C 1.38665 * 120.41925 * 119.99923 * 24 2 1 26 26 C 1.38624 * 118.42306 * 180.02562 * 25 24 2 27 27 C 1.38231 * 119.15873 * 0.02562 * 26 25 24 28 28 N 1.31855 * 120.76438 * 0.02562 * 27 26 25 29 29 C 1.31889 * 121.72393 * 359.70030 * 28 27 26 30 30 H 1.09007 * 109.47167 * 60.00092 * 1 2 3 31 31 H 1.09002 * 109.47345 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47292 * 300.00479 * 1 2 3 33 33 H 1.08997 * 109.47246 * 174.99705 * 4 2 1 34 34 H 1.08998 * 109.46698 * 54.99698 * 4 2 1 35 35 H 1.08998 * 109.59541 * 247.50303 * 8 7 5 36 36 H 1.09005 * 109.59450 * 7.94796 * 8 7 5 37 37 H 1.09005 * 109.49531 * 174.15966 * 9 8 7 38 38 H 1.08997 * 109.49424 * 294.23945 * 9 8 7 39 39 H 1.08994 * 113.49218 * 156.97385 * 12 11 10 40 40 H 1.08997 * 113.49196 * 26.45634 * 12 11 10 41 41 H 0.96994 * 119.99860 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.48627 * 141.16956 * 22 13 12 43 43 H 1.08998 * 113.49124 * 271.67465 * 22 13 12 44 44 H 1.08999 * 109.75255 * 108.58813 * 23 7 5 45 45 H 1.08999 * 109.78818 * 347.88428 * 23 7 5 46 46 H 1.08007 * 120.79015 * 359.97438 * 25 24 2 47 47 H 1.08000 * 120.42379 * 180.02562 * 26 25 24 48 48 H 1.08001 * 119.61593 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.61627 * 180.30915 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0116 1.0874 2.3633 7 7 1.9843 -0.3919 3.7002 8 6 2.7473 -1.6391 3.8649 9 6 3.9701 -1.3555 4.7434 10 8 3.5438 -0.7516 5.9689 11 6 2.8485 0.4785 5.7969 12 6 3.7458 1.6636 5.4377 13 7 3.9250 1.8937 6.8802 14 6 4.8882 2.4538 7.6762 15 1 5.7538 2.9204 7.2295 16 6 4.7520 2.4222 9.0573 17 7 3.7619 1.7504 9.6057 18 14 5.9740 3.3332 10.1374 19 1 7.0407 2.3976 10.5754 20 1 6.5797 4.4489 9.3671 21 1 5.2727 3.8769 11.3281 22 6 2.6176 1.2518 7.0925 23 6 1.6062 0.3500 4.9159 24 6 2.0323 -0.7105 -1.2305 25 6 2.8301 -0.0450 -2.1489 26 6 3.2687 -0.7382 -3.2664 27 6 2.8985 -2.0602 -3.4271 28 7 2.1376 -2.6610 -2.5334 29 6 1.7065 -2.0342 -1.4560 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1262 -0.7996 1.2056 34 1 1.6052 -1.7198 1.2952 35 1 2.1199 -2.3910 4.3434 36 1 3.0738 -1.9995 2.8893 37 1 4.4876 -2.2902 4.9593 38 1 4.6449 -0.6783 4.2198 39 1 3.2171 2.4711 4.9314 40 1 4.6640 1.3742 4.9267 41 1 3.6670 1.7279 10.5707 42 1 2.5847 0.6153 7.9767 43 1 1.7791 1.9463 7.0406 44 1 0.8286 -0.1936 5.4524 45 1 1.2425 1.3412 4.6452 46 1 3.1025 0.9892 -1.9977 47 1 3.8918 -0.2515 -4.0021 48 1 3.2357 -2.6072 -4.2951 49 1 1.0889 -2.5608 -0.7435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053458313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:56 Heat of formation + Delta-G solvation = 26.596141 kcal Electronic energy + Delta-G solvation = -30571.078197 eV Core-core repulsion = 26500.696191 eV Total energy + Delta-G solvation = -4070.382006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.87382 -40.34507 -38.99489 -36.44334 -35.73963 -34.50182 -32.57916 -32.28500 -30.69009 -30.01924 -28.71816 -27.51444 -25.84218 -24.93423 -24.39986 -23.82229 -23.34131 -22.02945 -20.86816 -19.23246 -18.78335 -17.70875 -17.17062 -16.89680 -16.67663 -16.13162 -15.76186 -15.43870 -15.27120 -14.94504 -14.49818 -14.44287 -14.32809 -14.11345 -14.02211 -13.49829 -13.43548 -13.38969 -13.32660 -13.06021 -12.73264 -12.42215 -12.13672 -12.08047 -11.57594 -11.49625 -11.40087 -11.13912 -11.10381 -10.88022 -10.82499 -10.76156 -10.16916 -10.13192 -10.07361 -9.77538 -9.65575 -9.57070 -9.28813 -9.13057 -8.84953 -8.33587 -6.87446 -5.74913 -3.08347 0.75222 0.94092 2.58341 2.87712 3.40217 3.44836 3.46708 3.47281 4.03865 4.04271 4.24658 4.37243 4.44470 4.58963 4.60496 4.69176 4.74315 4.82240 4.84225 4.93398 5.06325 5.09829 5.19467 5.22269 5.24126 5.29980 5.39406 5.43192 5.46669 5.56673 5.68139 5.70942 5.73943 5.74947 5.84214 5.86151 6.02102 6.05119 6.18160 6.29232 6.34731 6.36252 6.47511 6.54876 6.91367 7.18125 7.36704 7.50138 7.63128 7.82218 7.99717 8.13459 9.02981 9.70789 10.61528 11.41545 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002196 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.554624 B =12748.426766 C =12916.659405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.517 3.483 6 O -0.537 6.537 7 N -0.611 5.611 8 C 0.072 3.928 9 C 0.044 3.956 10 O -0.330 6.330 11 C 0.048 3.952 12 C 0.102 3.898 13 N -0.600 5.600 14 C -0.216 4.216 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.289 1.289 22 C 0.166 3.834 23 C 0.103 3.897 24 C -0.125 4.125 25 C -0.072 4.072 26 C -0.170 4.170 27 C 0.089 3.911 28 N -0.484 5.484 29 C 0.102 3.898 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.154 0.846 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -9.406 -23.758 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.051 4.051 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.305 3.695 6 O -0.415 6.415 7 N -0.345 5.345 8 C -0.051 4.051 9 C -0.034 4.034 10 O -0.248 6.248 11 C 0.006 3.994 12 C -0.025 4.025 13 N -0.325 5.325 14 C -0.343 4.343 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.563 5.563 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.216 1.216 22 C 0.040 3.960 23 C -0.020 4.020 24 C -0.127 4.127 25 C -0.098 4.098 26 C -0.190 4.190 27 C -0.067 4.067 28 N -0.192 5.192 29 C -0.055 4.055 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.120 0.880 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.171 0.829 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.723 -9.700 -23.436 25.801 hybrid contribution 0.992 1.390 0.409 1.756 sum -3.731 -8.311 -23.027 24.763 Atomic orbital electron populations 1.21976 0.93275 1.01852 1.03582 1.19839 0.96992 0.99249 0.88989 0.89161 1.21783 1.03007 1.00228 0.92348 1.20500 0.79294 0.85586 0.84096 1.90670 1.40294 1.24491 1.86001 1.48258 1.55195 1.24792 1.06229 1.22465 0.94657 0.86510 1.01466 1.22877 0.94551 0.98839 0.87124 1.88055 1.74521 1.35256 1.26925 1.23293 0.91061 0.85110 0.99969 1.22875 0.96619 0.93819 0.89174 1.45287 1.17345 1.70048 0.99849 1.18862 0.98645 1.29641 0.87146 0.90209 1.24782 0.98679 1.00654 0.96250 1.69819 1.32323 1.44172 1.09944 0.86091 0.80120 0.79269 0.80218 1.21547 1.20654 1.21566 1.22038 0.88464 0.91764 0.93729 1.22187 0.97387 0.98454 0.84015 1.20944 0.98460 0.95747 0.97535 1.21588 0.94754 1.00379 0.93082 1.22167 1.01699 0.96224 0.98893 1.22769 0.94024 0.92402 0.97543 1.67704 1.10086 1.38833 1.02578 1.22631 0.96924 0.91494 0.94424 0.92737 0.93024 0.89779 0.88782 0.88718 0.90328 0.89270 0.88038 0.92915 0.94118 0.94301 0.93621 0.89206 0.94130 0.90815 0.87987 0.84715 0.84780 0.82891 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.75 37.15 0.33 -1.03 16 2 C -0.03 -0.27 2.23 -91.77 -0.20 -0.48 16 3 H 0.09 0.89 7.74 -51.93 -0.40 0.48 16 4 C -0.13 -1.15 3.29 -27.88 -0.09 -1.24 16 5 C 0.52 6.48 7.43 -10.99 -0.08 6.40 16 6 O -0.54 -8.41 13.47 5.55 0.07 -8.34 16 7 N -0.61 -7.95 3.03 -172.46 -0.52 -8.47 16 8 C 0.07 0.75 6.50 -3.59 -0.02 0.73 16 9 C 0.04 0.59 6.90 37.27 0.26 0.85 16 10 O -0.33 -6.34 10.53 -35.23 -0.37 -6.71 16 11 C 0.05 0.92 1.27 -90.93 -0.12 0.80 16 12 C 0.10 2.18 7.91 -8.21 -0.06 2.12 16 13 N -0.60 -15.82 3.78 -184.94 -0.70 -16.52 16 14 C -0.22 -6.19 10.73 -15.06 -0.16 -6.35 16 15 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.43 11.44 55.49 0.63 -26.79 16 18 Si 0.91 22.37 29.56 -169.99 -5.02 17.34 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C 0.17 3.95 6.97 -8.34 -0.06 3.89 16 23 C 0.10 1.61 5.84 -3.66 -0.02 1.59 16 24 C -0.12 -1.02 4.79 -104.48 -0.50 -1.52 16 25 C -0.07 -0.54 9.81 -39.28 -0.39 -0.93 16 26 C -0.17 -1.15 10.11 -39.44 -0.40 -1.55 16 27 C 0.09 0.69 11.18 -17.54 -0.20 0.49 16 28 N -0.48 -4.66 10.36 -13.25 -0.14 -4.80 16 29 C 0.10 0.87 9.95 -17.55 -0.17 0.70 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.05 0.40 7.43 -51.93 -0.39 0.02 16 32 H 0.08 0.95 5.95 -51.93 -0.31 0.65 16 33 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 34 H 0.09 0.64 7.43 -51.93 -0.39 0.25 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.65 6.03 -51.93 -0.31 0.33 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.73 7.30 -51.93 -0.38 0.35 16 39 H 0.04 0.86 7.93 -51.93 -0.41 0.45 16 40 H 0.04 0.82 7.36 -51.93 -0.38 0.44 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.09 2.40 6.89 -51.93 -0.36 2.05 16 43 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.70 6.90 -51.93 -0.36 1.34 16 46 H 0.13 0.82 8.00 -52.48 -0.42 0.40 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 48 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.15 1.06 7.19 -52.49 -0.38 0.68 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -34.99 389.42 -9.55 -44.54 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.38 Total: -0.30 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.99 Total: 4.18 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.72 Total: -56.58 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.30 Total: -15.04 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.99 -9.55 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053458313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.134 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds