Wall clock time and date at job start Wed Apr 1 2020 04:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47345 * 2 1 4 4 C 1.53008 * 109.47073 * 120.00087 * 2 1 3 5 5 C 1.50696 * 109.46777 * 294.99973 * 4 2 1 6 6 O 1.21283 * 120.00496 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99826 * 179.97438 * 5 4 2 8 8 C 1.47130 * 121.06393 * 359.97438 * 7 5 4 9 9 C 1.53213 * 108.73241 * 127.72433 * 8 7 5 10 10 O 1.43116 * 109.35145 * 54.19675 * 9 8 7 11 11 C 1.42348 * 113.99623 * 300.22304 * 10 9 8 12 12 C 1.52924 * 114.29758 * 285.05261 * 11 10 9 13 13 N 1.47165 * 87.84689 * 271.71878 * 12 11 10 14 14 C 1.36929 * 136.00440 * 153.32201 * 13 12 11 15 15 H 1.08007 * 120.00060 * 4.15983 * 14 13 12 16 16 C 1.38814 * 120.00317 * 184.15508 * 14 13 12 17 17 N 1.31620 * 119.99910 * 6.13783 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 186.14479 * 16 14 13 19 19 H 1.48500 * 109.46437 * 265.02547 * 18 16 14 20 20 H 1.48496 * 109.47166 * 25.02250 * 18 16 14 21 21 H 1.48496 * 109.46910 * 145.02723 * 18 16 14 22 22 C 1.47187 * 87.99625 * 333.57747 * 13 12 11 23 23 C 1.47361 * 121.06281 * 180.02562 * 7 5 4 24 24 C 1.50705 * 109.47403 * 239.99795 * 2 1 3 25 25 C 1.38665 * 120.41925 * 119.99923 * 24 2 1 26 26 C 1.38624 * 118.42306 * 180.02562 * 25 24 2 27 27 C 1.38231 * 119.15873 * 0.02562 * 26 25 24 28 28 N 1.31855 * 120.76438 * 0.02562 * 27 26 25 29 29 C 1.31889 * 121.72393 * 359.70030 * 28 27 26 30 30 H 1.09007 * 109.47167 * 60.00092 * 1 2 3 31 31 H 1.09002 * 109.47345 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47292 * 300.00479 * 1 2 3 33 33 H 1.08997 * 109.47246 * 174.99705 * 4 2 1 34 34 H 1.08998 * 109.46698 * 54.99698 * 4 2 1 35 35 H 1.08998 * 109.59541 * 247.50303 * 8 7 5 36 36 H 1.09005 * 109.59450 * 7.94796 * 8 7 5 37 37 H 1.09005 * 109.49531 * 174.15966 * 9 8 7 38 38 H 1.08997 * 109.49424 * 294.23945 * 9 8 7 39 39 H 1.08994 * 113.49218 * 156.97385 * 12 11 10 40 40 H 1.08997 * 113.49196 * 26.45634 * 12 11 10 41 41 H 0.96994 * 119.99860 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.48627 * 141.16956 * 22 13 12 43 43 H 1.08998 * 113.49124 * 271.67465 * 22 13 12 44 44 H 1.08999 * 109.75255 * 108.58813 * 23 7 5 45 45 H 1.08999 * 109.78818 * 347.88428 * 23 7 5 46 46 H 1.08007 * 120.79015 * 359.97438 * 25 24 2 47 47 H 1.08000 * 120.42379 * 180.02562 * 26 25 24 48 48 H 1.08001 * 119.61593 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.61627 * 180.30915 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0116 1.0874 2.3633 7 7 1.9843 -0.3919 3.7002 8 6 2.7473 -1.6391 3.8649 9 6 3.9701 -1.3555 4.7434 10 8 3.5438 -0.7516 5.9689 11 6 2.8485 0.4785 5.7969 12 6 3.7458 1.6636 5.4377 13 7 3.9250 1.8937 6.8802 14 6 4.8882 2.4538 7.6762 15 1 5.7538 2.9204 7.2295 16 6 4.7520 2.4222 9.0573 17 7 3.7619 1.7504 9.6057 18 14 5.9740 3.3332 10.1374 19 1 7.0407 2.3976 10.5754 20 1 6.5797 4.4489 9.3671 21 1 5.2727 3.8769 11.3281 22 6 2.6176 1.2518 7.0925 23 6 1.6062 0.3500 4.9159 24 6 2.0323 -0.7105 -1.2305 25 6 2.8301 -0.0450 -2.1489 26 6 3.2687 -0.7382 -3.2664 27 6 2.8985 -2.0602 -3.4271 28 7 2.1376 -2.6610 -2.5334 29 6 1.7065 -2.0342 -1.4560 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.1262 -0.7996 1.2056 34 1 1.6052 -1.7198 1.2952 35 1 2.1199 -2.3910 4.3434 36 1 3.0738 -1.9995 2.8893 37 1 4.4876 -2.2902 4.9593 38 1 4.6449 -0.6783 4.2198 39 1 3.2171 2.4711 4.9314 40 1 4.6640 1.3742 4.9267 41 1 3.6670 1.7279 10.5707 42 1 2.5847 0.6153 7.9767 43 1 1.7791 1.9463 7.0406 44 1 0.8286 -0.1936 5.4524 45 1 1.2425 1.3412 4.6452 46 1 3.1025 0.9892 -1.9977 47 1 3.8918 -0.2515 -4.0021 48 1 3.2357 -2.6072 -4.2951 49 1 1.0889 -2.5608 -0.7435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053458313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:55 Heat of formation + Delta-G solvation = 3.364375 kcal Electronic energy + Delta-G solvation = -30572.085602 eV Core-core repulsion = 26500.696191 eV Total energy + Delta-G solvation = -4071.389411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.88199 -41.20989 -40.21576 -37.89041 -36.49728 -35.71052 -34.31996 -33.12209 -31.79870 -30.97892 -29.66738 -29.02441 -27.20456 -26.70816 -25.08594 -24.60493 -24.40372 -23.58754 -21.69779 -20.61420 -19.85192 -18.83420 -18.48507 -17.85092 -17.61715 -17.24464 -17.07382 -16.67423 -16.43850 -16.05662 -15.86219 -15.67577 -15.24897 -15.07795 -15.01301 -14.95677 -14.55954 -14.35034 -14.04189 -13.94814 -13.91235 -13.71744 -13.41273 -13.10160 -12.91145 -12.84880 -12.76197 -12.51968 -12.24518 -12.17425 -12.10427 -11.94945 -11.78509 -11.69909 -11.40398 -10.99874 -10.72686 -10.69876 -10.66391 -10.31134 -9.84904 -9.52863 -8.95325 -7.91969 -5.27691 0.20887 0.39012 1.43585 1.46289 1.55413 1.62914 1.87658 2.44097 2.69654 2.90831 3.26709 3.32870 3.36757 3.52652 3.62795 3.75419 3.83040 3.93560 4.01249 4.08933 4.12703 4.15282 4.18384 4.29001 4.32362 4.40915 4.49421 4.55542 4.66521 4.67339 4.67472 4.69381 4.72695 4.79833 4.86264 4.93333 4.96145 5.04661 5.11330 5.15348 5.21459 5.26774 5.33183 5.40008 5.44154 5.51692 5.83047 5.88784 6.37742 6.43309 6.85807 7.08088 7.16134 7.55456 8.54021 9.24152 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.002196 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.554624 B =12748.426766 C =12916.659405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.024 4.024 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.514 3.486 6 O -0.573 6.573 7 N -0.614 5.614 8 C 0.077 3.923 9 C 0.035 3.965 10 O -0.365 6.365 11 C 0.080 3.920 12 C 0.104 3.896 13 N -0.632 5.632 14 C -0.233 4.233 15 H 0.081 0.919 16 C -0.065 4.065 17 N -0.948 5.948 18 Si 0.983 3.017 19 H -0.284 1.284 20 H -0.269 1.269 21 H -0.291 1.291 22 C 0.159 3.841 23 C 0.114 3.886 24 C -0.127 4.127 25 C -0.082 4.082 26 C -0.168 4.168 27 C 0.079 3.921 28 N -0.511 5.511 29 C 0.095 3.905 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.145 0.855 47 H 0.159 0.841 48 H 0.174 0.826 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -10.819 -26.121 28.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 H 0.093 0.907 4 C -0.165 4.165 5 C 0.305 3.695 6 O -0.452 6.452 7 N -0.347 5.347 8 C -0.045 4.045 9 C -0.042 4.042 10 O -0.284 6.284 11 C 0.038 3.962 12 C -0.021 4.021 13 N -0.358 5.358 14 C -0.360 4.360 15 H 0.099 0.901 16 C -0.259 4.259 17 N -0.596 5.596 18 Si 0.810 3.190 19 H -0.211 1.211 20 H -0.194 1.194 21 H -0.217 1.217 22 C 0.033 3.967 23 C -0.011 4.011 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.187 4.187 27 C -0.077 4.077 28 N -0.220 5.220 29 C -0.062 4.062 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.163 0.837 47 H 0.176 0.824 48 H 0.191 0.809 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.855 -11.138 -25.852 28.412 hybrid contribution 0.746 1.812 1.042 2.219 sum -3.109 -9.326 -24.811 26.687 Atomic orbital electron populations 1.21912 0.93753 1.02395 1.02259 1.19708 0.96526 0.98611 0.89538 0.90669 1.21829 1.04158 1.00703 0.89799 1.21215 0.78320 0.85263 0.84702 1.90668 1.41833 1.26265 1.86464 1.48332 1.55585 1.25382 1.05398 1.22634 0.93189 0.85460 1.03178 1.23255 0.96074 0.99321 0.85562 1.87988 1.74894 1.34812 1.30668 1.22714 0.91741 0.84654 0.97088 1.22966 0.97322 0.95017 0.86834 1.45648 1.17856 1.70224 1.02091 1.19242 0.99360 1.29429 0.88013 0.90079 1.25682 1.00839 1.01786 0.97568 1.70022 1.34193 1.45590 1.09785 0.85010 0.77747 0.78186 0.78037 1.21090 1.19358 1.21706 1.22004 0.87731 0.92071 0.94906 1.21814 0.95531 0.98749 0.84975 1.20833 0.98970 0.95711 0.97409 1.21850 0.94636 1.01039 0.93286 1.22436 1.01389 0.95918 0.98985 1.23199 0.93580 0.93055 0.97849 1.67723 1.11117 1.39743 1.03373 1.22836 0.97109 0.91655 0.94602 0.92850 0.91530 0.92243 0.87044 0.85881 0.88840 0.85067 0.85375 0.93463 0.93633 0.93989 0.94102 0.92861 0.94161 0.89758 0.89211 0.83738 0.82380 0.80904 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.75 71.98 0.63 -1.83 16 2 C -0.02 -0.37 2.23 -11.54 -0.03 -0.40 16 3 H 0.07 1.40 7.74 -2.39 -0.02 1.38 16 4 C -0.13 -1.75 3.29 29.85 0.10 -1.65 16 5 C 0.51 11.88 7.43 87.66 0.65 12.53 16 6 O -0.57 -17.64 13.47 -3.04 -0.04 -17.68 16 7 N -0.61 -14.63 3.03 -817.92 -2.48 -17.11 16 8 C 0.08 1.33 6.50 86.33 0.56 1.89 16 9 C 0.03 0.84 6.90 72.05 0.50 1.34 16 10 O -0.37 -13.87 10.53 -148.98 -1.57 -15.44 16 11 C 0.08 3.11 1.27 -10.99 -0.01 3.09 16 12 C 0.10 4.52 7.91 83.32 0.66 5.18 16 13 N -0.63 -34.35 3.78 -739.90 -2.80 -37.15 16 14 C -0.23 -13.66 10.73 84.04 0.90 -12.75 16 15 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 16 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 17 N -0.95 -58.70 11.44 21.65 0.25 -58.46 16 18 Si 0.98 46.78 29.56 68.60 2.03 48.81 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 C 0.16 7.87 6.97 83.22 0.58 8.45 16 23 C 0.11 3.51 5.84 86.16 0.50 4.01 16 24 C -0.13 -1.78 4.79 -19.77 -0.09 -1.87 16 25 C -0.08 -1.05 9.81 22.46 0.22 -0.83 16 26 C -0.17 -1.82 10.11 22.36 0.23 -1.60 16 27 C 0.08 1.03 11.18 84.69 0.95 1.98 16 28 N -0.51 -8.69 10.36 -195.84 -2.03 -10.72 16 29 C 0.09 1.37 9.95 84.67 0.84 2.22 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 0.89 7.43 -2.39 -0.02 0.87 16 32 H 0.06 1.32 5.95 -2.39 -0.01 1.31 16 33 H 0.11 1.25 7.69 -2.39 -0.02 1.23 16 34 H 0.12 1.07 7.43 -2.39 -0.02 1.06 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 1.20 6.03 -2.38 -0.01 1.18 16 37 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.05 1.20 7.30 -2.39 -0.02 1.19 16 39 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 40 H 0.04 1.77 7.36 -2.39 -0.02 1.75 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.05 3.01 6.89 -2.39 -0.02 2.99 16 43 H 0.04 1.95 8.09 -2.39 -0.02 1.94 16 44 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.09 3.02 6.90 -2.39 -0.02 3.00 16 46 H 0.14 1.48 8.00 -2.91 -0.02 1.45 16 47 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 48 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 49 H 0.17 1.78 7.19 -2.91 -0.02 1.76 16 Total: -1.00 -79.37 389.42 1.97 -77.40 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.95 Total: 13.94 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 7.65 Total: 16.39 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -7.05 Total: -123.43 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.61 Total: -33.12 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -79.37 1.97 -77.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053458313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.767 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds