Wall clock time and date at job start Wed Apr 1 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 110.63582 * 2 1 4 4 C 1.54323 * 110.71585 * 123.13685 * 2 1 3 5 5 N 1.47025 * 107.26619 * 140.74005 * 4 2 1 6 6 C 1.34779 * 125.64836 * 181.02279 * 5 4 2 7 7 O 1.21581 * 119.99847 * 5.79591 * 6 5 4 8 8 C 1.47609 * 120.00120 * 185.79427 * 6 5 4 9 9 C 1.39700 * 120.09388 * 20.65910 * 8 6 5 10 10 C 1.37708 * 119.87942 * 179.91755 * 9 8 6 11 11 C 1.39084 * 120.41274 * 359.97438 * 10 9 8 12 12 C 1.39240 * 120.09960 * 0.19903 * 11 10 9 13 13 C 1.38738 * 119.67276 * 359.72990 * 12 11 10 14 14 N 1.39911 * 121.85375 * 179.67841 * 12 11 10 15 15 C 1.46895 * 111.00208 * 144.64980 * 14 12 11 16 16 C 1.46748 * 112.12269 * 19.86643 * 14 12 11 17 17 C 1.53421 * 108.58436 * 309.82121 * 16 14 12 18 18 O 1.35999 * 118.58609 * 180.24457 * 11 10 9 19 19 C 1.47419 * 108.70331 * 1.27972 * 5 4 2 20 20 C 1.55124 * 104.72524 * 335.56014 * 19 5 4 21 21 H 1.09002 * 110.94158 * 155.29174 * 20 19 5 22 22 N 1.46500 * 111.19224 * 279.18971 * 20 19 5 23 23 C 1.36946 * 119.99910 * 267.18728 * 22 20 19 24 24 H 1.08001 * 119.99984 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99900 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99841 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00248 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46655 * 89.99802 * 27 25 23 29 29 H 1.48499 * 109.47323 * 209.99942 * 27 25 23 30 30 H 1.48501 * 109.47054 * 330.00443 * 27 25 23 31 31 H 1.09001 * 109.47160 * 298.31520 * 1 2 3 32 32 H 1.08990 * 109.47225 * 58.31689 * 1 2 3 33 33 H 1.09001 * 109.46443 * 178.31435 * 1 2 3 34 34 H 1.08997 * 109.88653 * 21.32121 * 4 2 1 35 35 H 1.09000 * 110.01076 * 260.21701 * 4 2 1 36 36 H 1.08000 * 120.06445 * 359.89050 * 9 8 6 37 37 H 1.07999 * 119.79324 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.93507 * 180.17589 * 13 12 11 39 39 H 1.09006 * 109.47026 * 301.84911 * 15 14 12 40 40 H 1.08999 * 109.47477 * 61.85340 * 15 14 12 41 41 H 1.09001 * 109.47239 * 181.85502 * 15 14 12 42 42 H 1.08999 * 109.61715 * 69.54499 * 16 14 12 43 43 H 1.09004 * 109.62234 * 190.09429 * 16 14 12 44 44 H 1.09004 * 109.77464 * 182.95110 * 17 16 14 45 45 H 1.08999 * 109.77659 * 303.74734 * 17 16 14 46 46 H 1.09002 * 110.36311 * 94.48914 * 19 5 4 47 47 H 1.08999 * 110.37174 * 216.80725 * 19 5 4 48 48 H 0.97001 * 120.00156 * 87.18133 * 22 20 19 49 49 H 0.97003 * 119.99557 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2471 -1.5460 0.7428 6 6 3.9958 -2.3765 1.4953 7 8 3.6607 -2.6317 2.6358 8 6 5.2225 -2.9764 0.9347 9 6 5.8488 -2.3894 -0.1674 10 6 6.9940 -2.9518 -0.6858 11 6 7.5326 -4.1018 -0.1185 12 6 6.9130 -4.6957 0.9779 13 6 5.7600 -4.1315 1.5042 14 7 7.4193 -5.8563 1.5730 15 6 7.2131 -5.8353 3.0272 16 6 8.8331 -6.0738 1.2454 17 6 9.0059 -5.9599 -0.2748 18 8 8.6675 -4.6229 -0.6572 19 6 3.4707 -1.2412 -0.6821 20 6 2.0829 -0.7949 -1.2123 21 1 2.1881 -0.1518 -2.0861 22 7 1.2343 -1.9504 -1.5136 23 6 1.2126 -2.4726 -2.7794 24 1 1.8208 -2.0322 -3.5557 25 6 0.4090 -3.5678 -3.0647 26 7 0.3878 -4.0693 -4.2814 27 14 -0.6424 -4.3301 -1.7219 28 1 -1.9735 -3.6721 -1.7022 29 1 -0.8112 -5.7810 -1.9890 30 1 0.0218 -4.1428 -0.4069 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5397 -0.8744 33 1 -0.3632 -1.0273 -0.0302 34 1 1.3140 -1.4753 1.5782 35 1 2.3707 -0.1010 2.0010 36 1 5.4355 -1.4963 -0.6125 37 1 7.4772 -2.4965 -1.5376 38 1 5.2775 -4.5870 2.3563 39 1 7.6962 -4.9544 3.4500 40 1 6.1450 -5.8024 3.2423 41 1 7.6450 -6.7335 3.4685 42 1 9.4438 -5.3189 1.7406 43 1 9.1365 -7.0676 1.5747 44 1 10.0408 -6.1700 -0.5451 45 1 8.3428 -6.6655 -0.7753 46 1 4.1970 -0.4355 -0.7883 47 1 3.8103 -2.1313 -1.2118 48 1 0.6879 -2.3458 -0.8164 49 1 -0.1741 -4.8345 -4.4809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054793681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:16 Heat of formation + Delta-G solvation = 5.287738 kcal Electronic energy + Delta-G solvation = -31287.009654 eV Core-core repulsion = 27215.703646 eV Total energy + Delta-G solvation = -4071.306008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28372 -40.00009 -37.95776 -37.13556 -36.71506 -34.03667 -32.63008 -31.17195 -30.76267 -30.57141 -29.23128 -28.25646 -26.65320 -25.16780 -24.78302 -23.67058 -22.54855 -21.96770 -20.73567 -19.47708 -19.39757 -18.19275 -17.87905 -17.34297 -16.98157 -16.08655 -15.83870 -15.45279 -15.12894 -14.82623 -14.63021 -14.45821 -14.32571 -14.15361 -14.04599 -13.61867 -13.55097 -13.08031 -12.97607 -12.73573 -12.63718 -12.37215 -12.29103 -12.05268 -12.03615 -11.75830 -11.62753 -11.46328 -11.15352 -11.01686 -10.90349 -10.69510 -10.57022 -10.31196 -10.10236 -9.99401 -9.71658 -9.60648 -9.05282 -8.62691 -8.30605 -7.78114 -7.33071 -5.83256 -3.19616 0.93883 1.27509 2.81547 3.09562 3.23955 3.35058 3.40201 3.42567 3.44172 3.89893 4.22208 4.44696 4.54860 4.61251 4.67397 4.72056 4.88991 5.00859 5.05457 5.07952 5.12016 5.15016 5.18012 5.21440 5.30900 5.34914 5.41868 5.54743 5.56077 5.61743 5.73097 5.77736 5.82997 5.88825 5.93323 6.02530 6.09740 6.18584 6.22537 6.34074 6.35706 6.39373 6.52024 6.60490 6.67397 6.71524 6.76236 7.23861 7.79416 7.91318 8.35564 8.40590 9.12944 9.85801 10.04075 11.34443 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011325 B = 0.003520 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.803711 B = 7953.066701 C = 8817.694881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.118 4.118 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.600 5.600 6 C 0.576 3.424 7 O -0.553 6.553 8 C -0.131 4.131 9 C -0.084 4.084 10 C -0.130 4.130 11 C 0.111 3.889 12 C 0.029 3.971 13 C -0.064 4.064 14 N -0.490 5.490 15 C 0.023 3.977 16 C 0.014 3.986 17 C 0.057 3.943 18 O -0.312 6.312 19 C 0.060 3.940 20 C 0.177 3.823 21 H 0.085 0.915 22 N -0.732 5.732 23 C -0.250 4.250 24 H 0.093 0.907 25 C 0.013 3.987 26 N -0.929 5.929 27 Si 0.876 3.124 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.152 0.848 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.364 0.636 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.608 2.547 11.584 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.332 5.332 6 C 0.366 3.634 7 O -0.433 6.433 8 C -0.134 4.134 9 C -0.103 4.103 10 C -0.150 4.150 11 C 0.063 3.937 12 C -0.068 4.068 13 C -0.086 4.086 14 N -0.206 5.206 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.019 4.019 18 O -0.226 6.226 19 C -0.066 4.066 20 C 0.065 3.935 21 H 0.103 0.897 22 N -0.374 5.374 23 C -0.379 4.379 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.575 5.575 27 Si 0.706 3.294 28 H -0.209 1.209 29 H -0.216 1.216 30 H -0.203 1.203 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.169 0.831 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.198 0.802 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.393 1.916 11.683 20.221 hybrid contribution -0.407 -0.546 1.257 1.430 sum 15.986 1.370 12.940 20.612 Atomic orbital electron populations 1.21615 0.93673 1.02639 1.01157 1.22582 0.96988 0.98965 0.95223 0.89658 1.21982 0.87722 0.94335 0.96713 1.48205 1.29121 1.43926 1.11921 1.17780 0.82758 0.78060 0.84795 1.90730 1.72337 1.61592 1.18667 1.19566 0.97144 0.98019 0.98702 1.21787 0.94052 1.00505 0.94005 1.20410 0.96943 0.95968 1.01631 1.18896 0.87066 0.94497 0.93258 1.18699 0.98022 0.92492 0.97633 1.20896 0.93779 0.94219 0.99681 1.58852 1.17077 1.33077 1.11636 1.22566 1.03663 1.01619 0.84424 1.22824 0.87717 1.03436 0.97341 1.23185 1.02614 0.82396 0.93666 1.86198 1.38941 1.30219 1.67198 1.23812 1.01048 1.01103 0.80618 1.21388 0.88080 0.89283 0.94769 0.89708 1.42728 1.50695 1.33980 1.09952 1.19054 1.22461 1.10288 0.86129 0.88876 1.24619 0.99670 0.98155 0.95909 1.69688 1.43028 1.26331 1.18502 0.86688 0.81180 0.79203 0.82352 1.20862 1.21618 1.20295 0.93349 0.91749 0.92110 0.91675 0.91949 0.83057 0.84329 0.84265 0.94111 0.89822 0.90427 0.92485 0.88099 0.86669 0.90339 0.91701 0.88998 0.80174 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.81 37.16 0.33 -1.58 16 2 C -0.12 -1.66 3.40 -88.79 -0.30 -1.96 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.78 6.46 -3.06 -0.02 1.76 16 5 N -0.60 -10.10 3.32 -171.58 -0.57 -10.67 16 6 C 0.58 10.53 7.68 -12.44 -0.10 10.43 16 7 O -0.55 -11.46 16.86 5.29 0.09 -11.37 16 8 C -0.13 -2.13 5.73 -105.04 -0.60 -2.73 16 9 C -0.08 -1.20 8.08 -39.23 -0.32 -1.51 16 10 C -0.13 -1.75 9.91 -39.46 -0.39 -2.14 16 11 C 0.11 1.54 6.48 -38.90 -0.25 1.29 16 12 C 0.03 0.41 5.82 -83.61 -0.49 -0.08 16 13 C -0.06 -1.00 8.60 -38.91 -0.33 -1.33 16 14 N -0.49 -5.71 4.89 -178.69 -0.87 -6.58 16 15 C 0.02 0.22 8.89 60.06 0.53 0.75 16 16 C 0.01 0.12 5.71 -3.69 -0.02 0.10 16 17 C 0.06 0.51 7.25 37.38 0.27 0.78 16 18 O -0.31 -3.88 10.39 -19.74 -0.21 -4.09 16 19 C 0.06 0.93 4.65 -2.42 -0.01 0.92 16 20 C 0.18 3.02 3.47 -65.67 -0.23 2.79 16 21 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 22 N -0.73 -16.16 4.38 -51.24 -0.22 -16.38 16 23 C -0.25 -6.64 10.44 -15.06 -0.16 -6.79 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 26 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 27 Si 0.88 22.12 27.73 -169.99 -4.71 17.41 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 30 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.02 6.36 -51.93 -0.33 0.69 16 34 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.15 1.91 4.21 -52.49 -0.22 1.69 16 37 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.14 2.13 5.78 -52.49 -0.30 1.83 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.86 6.27 -51.93 -0.33 0.53 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.13 16 42 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 47 H 0.09 1.63 6.61 -51.93 -0.34 1.29 16 48 H 0.36 8.30 4.20 -40.82 -0.17 8.13 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -34.07 381.24 -9.28 -43.35 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.12 Total: 9.33 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.18 Total: 0.97 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.89 Total: -61.35 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.12 Total: -15.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.07 -9.28 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.635 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds