Wall clock time and date at job start Wed Apr 1 2020 03:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 110.63582 * 2 1 4 4 C 1.54323 * 110.71585 * 123.13685 * 2 1 3 5 5 N 1.47025 * 107.26619 * 140.74005 * 4 2 1 6 6 C 1.34779 * 125.64836 * 181.02279 * 5 4 2 7 7 O 1.21581 * 119.99847 * 5.79591 * 6 5 4 8 8 C 1.47609 * 120.00120 * 185.79427 * 6 5 4 9 9 C 1.39700 * 120.09388 * 20.65910 * 8 6 5 10 10 C 1.37708 * 119.87942 * 179.91755 * 9 8 6 11 11 C 1.39084 * 120.41274 * 359.97438 * 10 9 8 12 12 C 1.39240 * 120.09960 * 0.19903 * 11 10 9 13 13 C 1.38738 * 119.67276 * 359.72990 * 12 11 10 14 14 N 1.39911 * 121.85375 * 179.67841 * 12 11 10 15 15 C 1.46895 * 111.00208 * 144.64980 * 14 12 11 16 16 C 1.46748 * 112.12269 * 19.86643 * 14 12 11 17 17 C 1.53421 * 108.58436 * 309.82121 * 16 14 12 18 18 O 1.35999 * 118.58609 * 180.24457 * 11 10 9 19 19 C 1.47419 * 108.70331 * 1.27972 * 5 4 2 20 20 C 1.55124 * 104.72524 * 335.56014 * 19 5 4 21 21 H 1.09002 * 110.94158 * 155.29174 * 20 19 5 22 22 N 1.46500 * 111.19224 * 279.18971 * 20 19 5 23 23 C 1.36946 * 119.99910 * 267.18728 * 22 20 19 24 24 H 1.08001 * 119.99984 * 359.97438 * 23 22 20 25 25 C 1.38810 * 119.99900 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99841 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00248 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46655 * 89.99802 * 27 25 23 29 29 H 1.48499 * 109.47323 * 209.99942 * 27 25 23 30 30 H 1.48501 * 109.47054 * 330.00443 * 27 25 23 31 31 H 1.09001 * 109.47160 * 298.31520 * 1 2 3 32 32 H 1.08990 * 109.47225 * 58.31689 * 1 2 3 33 33 H 1.09001 * 109.46443 * 178.31435 * 1 2 3 34 34 H 1.08997 * 109.88653 * 21.32121 * 4 2 1 35 35 H 1.09000 * 110.01076 * 260.21701 * 4 2 1 36 36 H 1.08000 * 120.06445 * 359.89050 * 9 8 6 37 37 H 1.07999 * 119.79324 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.93507 * 180.17589 * 13 12 11 39 39 H 1.09006 * 109.47026 * 301.84911 * 15 14 12 40 40 H 1.08999 * 109.47477 * 61.85340 * 15 14 12 41 41 H 1.09001 * 109.47239 * 181.85502 * 15 14 12 42 42 H 1.08999 * 109.61715 * 69.54499 * 16 14 12 43 43 H 1.09004 * 109.62234 * 190.09429 * 16 14 12 44 44 H 1.09004 * 109.77464 * 182.95110 * 17 16 14 45 45 H 1.08999 * 109.77659 * 303.74734 * 17 16 14 46 46 H 1.09002 * 110.36311 * 94.48914 * 19 5 4 47 47 H 1.08999 * 110.37174 * 216.80725 * 19 5 4 48 48 H 0.97001 * 120.00156 * 87.18133 * 22 20 19 49 49 H 0.97003 * 119.99557 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2471 -1.5460 0.7428 6 6 3.9958 -2.3765 1.4953 7 8 3.6607 -2.6317 2.6358 8 6 5.2225 -2.9764 0.9347 9 6 5.8488 -2.3894 -0.1674 10 6 6.9940 -2.9518 -0.6858 11 6 7.5326 -4.1018 -0.1185 12 6 6.9130 -4.6957 0.9779 13 6 5.7600 -4.1315 1.5042 14 7 7.4193 -5.8563 1.5730 15 6 7.2131 -5.8353 3.0272 16 6 8.8331 -6.0738 1.2454 17 6 9.0059 -5.9599 -0.2748 18 8 8.6675 -4.6229 -0.6572 19 6 3.4707 -1.2412 -0.6821 20 6 2.0829 -0.7949 -1.2123 21 1 2.1881 -0.1518 -2.0861 22 7 1.2343 -1.9504 -1.5136 23 6 1.2126 -2.4726 -2.7794 24 1 1.8208 -2.0322 -3.5557 25 6 0.4090 -3.5678 -3.0647 26 7 0.3878 -4.0693 -4.2814 27 14 -0.6424 -4.3301 -1.7219 28 1 -1.9735 -3.6721 -1.7022 29 1 -0.8112 -5.7810 -1.9890 30 1 0.0218 -4.1428 -0.4069 31 1 -0.3633 0.4874 0.9047 32 1 -0.3633 0.5397 -0.8744 33 1 -0.3632 -1.0273 -0.0302 34 1 1.3140 -1.4753 1.5782 35 1 2.3707 -0.1010 2.0010 36 1 5.4355 -1.4963 -0.6125 37 1 7.4772 -2.4965 -1.5376 38 1 5.2775 -4.5870 2.3563 39 1 7.6962 -4.9544 3.4500 40 1 6.1450 -5.8024 3.2423 41 1 7.6450 -6.7335 3.4685 42 1 9.4438 -5.3189 1.7406 43 1 9.1365 -7.0676 1.5747 44 1 10.0408 -6.1700 -0.5451 45 1 8.3428 -6.6655 -0.7753 46 1 4.1970 -0.4355 -0.7883 47 1 3.8103 -2.1313 -1.2118 48 1 0.6879 -2.3458 -0.8164 49 1 -0.1741 -4.8345 -4.4809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054793681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:15 Heat of formation + Delta-G solvation = -18.354053 kcal Electronic energy + Delta-G solvation = -31288.034839 eV Core-core repulsion = 27215.703646 eV Total energy + Delta-G solvation = -4072.331193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.26690 -41.26280 -39.24337 -38.21855 -37.69959 -35.79448 -34.09603 -32.77201 -31.90081 -31.64523 -30.13944 -29.73711 -27.77464 -26.12098 -25.94055 -25.29248 -23.77925 -23.13862 -21.80492 -20.84310 -20.59685 -19.75815 -19.15842 -18.48858 -17.93888 -17.45904 -17.01658 -16.62953 -16.42368 -16.08070 -15.86055 -15.64131 -15.47695 -15.38270 -15.18539 -14.87999 -14.66127 -14.54211 -14.30987 -14.05387 -13.87162 -13.53407 -13.38355 -13.22782 -13.09520 -13.04886 -12.93172 -12.84228 -12.59380 -12.35501 -12.10888 -12.02842 -11.91298 -11.74808 -11.60245 -11.41507 -11.14556 -11.05897 -10.90081 -9.85966 -9.58766 -9.20876 -8.75416 -8.02321 -5.32578 -0.20816 0.20833 1.31681 1.35148 1.38911 1.63286 1.95122 2.18675 2.44982 2.52660 2.76997 3.27461 3.36188 3.41188 3.56318 3.60475 3.73543 3.84203 3.97459 4.02722 4.04484 4.10901 4.19428 4.27219 4.36121 4.38113 4.42230 4.58533 4.60713 4.63072 4.66768 4.67317 4.72537 4.80093 4.83039 4.88271 4.93904 4.96329 5.02096 5.18690 5.19985 5.26010 5.34774 5.48229 5.50558 5.74729 5.81435 5.82823 6.23149 6.27080 6.45360 7.04183 7.08625 7.85974 8.01847 9.18994 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011325 B = 0.003520 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.803711 B = 7953.066701 C = 8817.694881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.127 0.873 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.569 3.431 7 O -0.589 6.589 8 C -0.154 4.154 9 C -0.083 4.083 10 C -0.134 4.134 11 C 0.104 3.896 12 C 0.027 3.973 13 C -0.082 4.082 14 N -0.504 5.504 15 C 0.024 3.976 16 C 0.013 3.987 17 C 0.049 3.951 18 O -0.320 6.320 19 C 0.067 3.933 20 C 0.162 3.838 21 H 0.098 0.902 22 N -0.739 5.739 23 C -0.215 4.215 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.978 5.978 27 Si 0.932 3.068 28 H -0.274 1.274 29 H -0.301 1.301 30 H -0.274 1.274 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.131 0.869 44 H 0.153 0.847 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.361 0.639 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.527 3.825 12.487 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 H 0.145 0.855 4 C -0.012 4.012 5 N -0.332 5.332 6 C 0.360 3.640 7 O -0.472 6.472 8 C -0.158 4.158 9 C -0.102 4.102 10 C -0.153 4.153 11 C 0.056 3.944 12 C -0.071 4.071 13 C -0.103 4.103 14 N -0.220 5.220 15 C -0.122 4.122 16 C -0.112 4.112 17 C -0.026 4.026 18 O -0.233 6.233 19 C -0.057 4.057 20 C 0.052 3.948 21 H 0.115 0.885 22 N -0.380 5.380 23 C -0.347 4.347 24 H 0.093 0.907 25 C -0.244 4.244 26 N -0.629 5.629 27 Si 0.762 3.238 28 H -0.200 1.200 29 H -0.229 1.229 30 H -0.200 1.200 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.148 0.852 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.149 0.851 44 H 0.170 0.830 45 H 0.089 0.911 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.194 0.806 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.341 3.244 12.619 22.498 hybrid contribution -0.853 -0.927 0.987 1.601 sum 17.487 2.317 13.606 22.278 Atomic orbital electron populations 1.21615 0.93812 1.01047 1.02631 1.22573 0.96784 1.00167 0.92383 0.85511 1.22126 0.86861 0.94222 0.97966 1.48312 1.29143 1.43579 1.12207 1.18157 0.83385 0.77943 0.84532 1.90693 1.73459 1.62891 1.20187 1.19592 0.97137 0.98933 1.00102 1.21889 0.94198 1.00852 0.93297 1.20706 0.96660 0.95888 1.01996 1.19097 0.87487 0.94672 0.93152 1.18846 0.97542 0.92961 0.97721 1.20921 0.94735 0.94678 0.99991 1.58899 1.19006 1.31608 1.12515 1.22600 1.03033 1.02999 0.83525 1.23001 0.85860 1.05276 0.97113 1.23545 1.04530 0.80571 0.93948 1.86191 1.38016 1.31894 1.67236 1.23762 1.00869 1.01529 0.79581 1.21759 0.88195 0.88082 0.96766 0.88463 1.42790 1.51750 1.35338 1.08130 1.19105 1.19579 1.08638 0.87331 0.90672 1.25205 1.02066 0.99685 0.97481 1.69826 1.45082 1.27499 1.20491 0.85769 0.80225 0.77668 0.80181 1.19960 1.22871 1.19961 0.90730 0.91536 0.95103 0.93929 0.89968 0.81667 0.82157 0.85213 0.94077 0.91317 0.87643 0.91995 0.85076 0.82956 0.91073 0.87211 0.91260 0.80589 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.81 71.99 0.63 -2.86 16 2 C -0.10 -2.49 3.40 -9.61 -0.03 -2.52 16 3 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.11 3.22 6.46 86.73 0.56 3.78 16 5 N -0.60 -19.56 3.32 -815.03 -2.71 -22.27 16 6 C 0.57 20.92 7.68 86.72 0.67 21.58 16 7 O -0.59 -25.05 16.86 -3.97 -0.07 -25.11 16 8 C -0.15 -5.06 5.73 -20.13 -0.12 -5.17 16 9 C -0.08 -2.29 8.08 22.50 0.18 -2.11 16 10 C -0.13 -3.41 9.91 22.35 0.22 -3.19 16 11 C 0.10 2.79 6.48 22.71 0.15 2.94 16 12 C 0.03 0.76 5.82 38.21 0.22 0.98 16 13 C -0.08 -2.59 8.60 22.71 0.20 -2.40 16 14 N -0.50 -11.20 4.89 -719.25 -3.52 -14.71 16 15 C 0.02 0.44 8.89 127.69 1.14 1.57 16 16 C 0.01 0.20 5.71 86.47 0.49 0.69 16 17 C 0.05 0.75 7.25 72.12 0.52 1.27 16 18 O -0.32 -7.37 10.39 -93.54 -0.97 -8.34 16 19 C 0.07 1.96 4.65 86.93 0.40 2.36 16 20 C 0.16 5.15 3.47 46.46 0.16 5.31 16 21 H 0.10 2.91 8.09 -2.39 -0.02 2.89 16 22 N -0.74 -32.07 4.38 -316.03 -1.38 -33.46 16 23 C -0.22 -11.50 10.44 84.03 0.88 -10.62 16 24 H 0.08 4.25 8.06 -2.91 -0.02 4.22 16 25 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 26 N -0.98 -61.62 13.97 21.65 0.30 -61.32 16 27 Si 0.93 46.83 27.73 68.60 1.90 48.73 16 28 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 29 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 30 H -0.27 -13.38 6.52 99.48 0.65 -12.73 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 0.99 6.36 -2.39 -0.02 0.97 16 34 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.17 3.84 4.21 -2.91 -0.01 3.83 16 37 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.13 4.24 5.78 -2.91 -0.02 4.22 16 39 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.07 1.45 6.27 -2.39 -0.01 1.44 16 41 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 42 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 43 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.15 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.11 2.28 6.91 -2.39 -0.02 2.26 16 47 H 0.07 2.39 6.61 -2.39 -0.02 2.37 16 48 H 0.36 16.28 4.20 -92.71 -0.39 15.89 16 49 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.96 381.24 0.83 -76.13 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.53 Total: 31.29 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.74 Total: 9.06 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -7.31 Total: -131.75 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.04 Total: -33.45 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -76.96 0.83 -76.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.774 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds