Wall clock time and date at job start Wed Apr 1 2020 03:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.64099 * 2 1 4 4 C 1.54323 * 110.71931 * 236.66285 * 2 1 3 5 5 N 1.47016 * 107.27080 * 219.44626 * 4 2 1 6 6 C 1.34786 * 125.64820 * 178.89902 * 5 4 2 7 7 O 1.21578 * 119.99839 * 174.69435 * 6 5 4 8 8 C 1.47612 * 119.99503 * 354.69121 * 6 5 4 9 9 C 1.39695 * 120.10219 * 7.95419 * 8 6 5 10 10 C 1.37700 * 119.88200 * 180.02562 * 9 8 6 11 11 C 1.39081 * 120.41218 * 359.92042 * 10 9 8 12 12 C 1.39247 * 120.10360 * 359.97049 * 11 10 9 13 13 C 1.38731 * 119.66979 * 359.89776 * 12 11 10 14 14 N 1.39904 * 121.84421 * 180.29028 * 12 11 10 15 15 C 1.46903 * 110.99795 * 104.78899 * 14 12 11 16 16 C 1.46759 * 112.11878 * 340.01570 * 14 12 11 17 17 C 1.53428 * 108.57330 * 50.23758 * 16 14 12 18 18 O 1.36011 * 118.58337 * 179.77800 * 11 10 9 19 19 C 1.47424 * 108.70425 * 358.93854 * 5 4 2 20 20 C 1.54905 * 104.82967 * 24.13121 * 19 5 4 21 21 H 1.08994 * 111.03494 * 204.89725 * 20 19 5 22 22 N 1.46505 * 111.00359 * 81.06541 * 20 19 5 23 23 C 1.36931 * 120.00201 * 92.80224 * 22 20 19 24 24 H 1.07997 * 120.00382 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99896 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00302 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00004 * 180.27587 * 25 23 22 28 28 H 1.48500 * 109.47571 * 179.72634 * 27 25 23 29 29 H 1.48500 * 109.47212 * 299.72448 * 27 25 23 30 30 H 1.48500 * 109.47490 * 59.72208 * 27 25 23 31 31 H 1.08994 * 109.46979 * 296.86055 * 1 2 3 32 32 H 1.09003 * 109.47204 * 56.85657 * 1 2 3 33 33 H 1.08994 * 109.47240 * 176.85502 * 1 2 3 34 34 H 1.09003 * 109.88506 * 338.86338 * 4 2 1 35 35 H 1.09000 * 109.88091 * 100.02961 * 4 2 1 36 36 H 1.07999 * 120.05884 * 0.05684 * 9 8 6 37 37 H 1.08003 * 119.79054 * 179.97438 * 10 9 8 38 38 H 1.07993 * 119.93995 * 180.13372 * 13 12 11 39 39 H 1.08998 * 109.47276 * 298.55319 * 15 14 12 40 40 H 1.09002 * 109.46613 * 58.54744 * 15 14 12 41 41 H 1.08992 * 109.47465 * 178.55202 * 15 14 12 42 42 H 1.08989 * 109.61927 * 290.50720 * 16 14 12 43 43 H 1.08999 * 109.61777 * 169.96105 * 16 14 12 44 44 H 1.09005 * 109.76552 * 177.05676 * 17 16 14 45 45 H 1.08993 * 109.77520 * 56.26608 * 17 16 14 46 46 H 1.08994 * 110.36696 * 265.29145 * 19 5 4 47 47 H 1.09007 * 110.36506 * 142.96766 * 19 5 4 48 48 H 0.97005 * 119.99579 * 272.80282 * 22 20 19 49 49 H 0.96992 * 120.00126 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2444 -1.5520 -0.7364 6 6 3.9914 -2.3874 -1.4853 7 8 4.9950 -2.8898 -1.0180 8 6 3.5907 -2.6921 -2.8730 9 6 2.5375 -1.9932 -3.4677 10 6 2.1672 -2.2815 -4.7623 11 6 2.8366 -3.2643 -5.4837 12 6 3.8890 -3.9645 -4.8998 13 6 4.2671 -3.6752 -3.5967 14 7 4.5912 -4.9558 -5.5938 15 6 5.9109 -4.4681 -6.0163 16 6 3.8310 -5.4734 -6.7375 17 6 3.3332 -4.2856 -7.5714 18 8 2.4370 -3.5219 -6.7580 19 6 3.4632 -1.2486 0.6896 20 6 2.0790 -0.7934 1.2151 21 1 2.1844 -0.1485 2.0874 22 7 1.2271 -1.9463 1.5177 23 6 1.2021 -2.4653 2.7846 24 1 1.8100 -2.0246 3.5609 25 6 0.3946 -3.5573 3.0714 26 7 -0.3468 -4.0942 2.1256 27 14 0.3546 -4.2606 4.8015 28 1 -0.5842 -5.4103 4.8470 29 1 1.7154 -4.7175 5.1817 30 1 -0.0991 -3.2132 5.7514 31 1 -0.3633 0.4643 0.9167 32 1 -0.3634 0.5619 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4785 -1.5751 35 1 2.3741 -0.1058 -1.9975 36 1 2.0150 -1.2277 -2.9133 37 1 1.3525 -1.7405 -5.2205 38 1 5.0842 -4.2141 -3.1403 39 1 5.7865 -3.6208 -6.6905 40 1 6.4799 -4.1552 -5.1408 41 1 6.4456 -5.2664 -6.5309 42 1 2.9794 -6.0517 -6.3793 43 1 4.4748 -6.1056 -7.3490 44 1 2.8096 -4.6495 -8.4555 45 1 4.1781 -3.6659 -7.8714 46 1 4.1931 -0.4466 0.7992 47 1 3.7960 -2.1406 1.2205 48 1 0.6808 -2.3419 0.8206 49 1 -0.9113 -4.8570 2.3261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054793683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:24 Heat of formation + Delta-G solvation = 12.959562 kcal Electronic energy + Delta-G solvation = -31053.174845 eV Core-core repulsion = 26982.201512 eV Total energy + Delta-G solvation = -4070.973333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.40969 -40.00401 -37.84154 -36.97680 -36.73371 -34.00791 -32.30715 -31.34345 -30.61598 -30.40695 -29.10551 -27.77701 -26.38483 -25.73372 -24.54628 -23.86306 -22.87579 -22.06000 -20.58580 -19.68688 -19.16545 -18.03815 -17.62105 -17.20728 -17.02603 -15.93932 -15.71411 -15.44268 -15.06262 -14.89623 -14.70502 -14.53164 -14.11642 -13.92697 -13.87639 -13.68738 -13.62471 -13.00528 -12.91583 -12.77339 -12.48484 -12.44328 -12.25653 -12.07373 -11.97248 -11.61394 -11.40191 -11.27001 -11.11246 -11.07269 -10.87209 -10.71221 -10.40912 -10.22853 -9.87807 -9.65063 -9.60306 -9.53899 -8.99874 -8.56184 -8.19846 -8.11798 -6.99518 -5.79020 -3.08369 0.90505 1.22267 2.91271 3.00287 3.24835 3.44454 3.48990 3.49686 3.49918 3.89648 4.16700 4.51479 4.56816 4.57214 4.62405 4.69619 4.81298 4.91429 5.01302 5.06401 5.11463 5.17623 5.21850 5.30805 5.39672 5.43577 5.51775 5.54311 5.65756 5.67964 5.71923 5.79083 5.94154 5.98077 6.05685 6.19695 6.22735 6.28826 6.33007 6.36851 6.38225 6.53738 6.57687 6.72071 6.76877 6.82324 6.93062 7.20512 7.68384 7.92060 8.38713 8.53682 9.50723 10.05136 10.39811 11.43019 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002850 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.944966 B = 9823.091827 C =10238.701610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.096 3.904 5 N -0.596 5.596 6 C 0.574 3.426 7 O -0.546 6.546 8 C -0.141 4.141 9 C -0.099 4.099 10 C -0.140 4.140 11 C 0.106 3.894 12 C 0.012 3.988 13 C -0.024 4.024 14 N -0.489 5.489 15 C 0.023 3.977 16 C 0.015 3.985 17 C 0.020 3.980 18 O -0.307 6.307 19 C 0.079 3.921 20 C 0.171 3.829 21 H 0.076 0.924 22 N -0.707 5.707 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.907 3.093 28 H -0.291 1.291 29 H -0.286 1.286 30 H -0.286 1.286 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.386 0.614 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 5.590 -20.894 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.100 0.900 4 C -0.027 4.027 5 N -0.328 5.328 6 C 0.364 3.636 7 O -0.425 6.425 8 C -0.144 4.144 9 C -0.117 4.117 10 C -0.159 4.159 11 C 0.058 3.942 12 C -0.084 4.084 13 C -0.044 4.044 14 N -0.206 5.206 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.057 4.057 18 O -0.220 6.220 19 C -0.047 4.047 20 C 0.058 3.942 21 H 0.093 0.907 22 N -0.348 5.348 23 C -0.377 4.377 24 H 0.089 0.911 25 C -0.205 4.205 26 N -0.577 5.577 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.212 1.212 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.186 0.814 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.101 0.899 48 H 0.221 0.779 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.459 4.831 -20.289 22.150 hybrid contribution -0.156 -0.341 0.012 0.375 sum 7.302 4.490 -20.277 22.015 Atomic orbital electron populations 1.21611 0.93316 1.03068 1.00977 1.22603 0.97180 0.98657 0.95294 0.90033 1.22582 0.88454 0.94550 0.97120 1.48153 1.29172 1.43446 1.12045 1.17701 0.82791 0.78320 0.84807 1.90747 1.25825 1.52530 1.73422 1.19724 0.99383 1.00541 0.94791 1.22635 0.95142 0.99552 0.94327 1.20426 1.02483 0.98232 0.94778 1.19311 0.96620 0.94117 0.84133 1.18537 0.99179 0.95639 0.95028 1.20869 0.98435 0.94584 0.90516 1.59182 1.03894 1.33017 1.24485 1.22619 0.89100 0.99382 1.01219 1.22991 0.99783 0.96988 0.91479 1.23580 0.94478 0.93696 0.93962 1.86278 1.44602 1.70287 1.20873 1.23360 1.00440 1.00990 0.79883 1.21394 0.88562 0.89944 0.94296 0.90661 1.42326 1.49479 1.32720 1.10233 1.19186 1.21143 1.10046 0.87290 0.91069 1.24735 0.99451 0.98646 0.97634 1.69640 1.30631 1.25619 1.31792 0.86274 0.77316 0.78426 0.84177 1.21737 1.21222 1.21232 0.92024 0.93744 0.91168 0.90308 0.91270 0.81360 0.84602 0.84066 0.94946 0.90199 0.90434 0.88578 0.88206 0.86766 0.91550 0.92740 0.89947 0.77856 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.71 37.16 0.32 -1.59 16 2 C -0.12 -1.68 3.42 -88.79 -0.30 -1.98 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.10 1.35 4.45 -3.07 -0.01 1.33 16 5 N -0.60 -10.49 3.33 -175.69 -0.58 -11.07 16 6 C 0.57 10.92 7.80 -12.43 -0.10 10.82 16 7 O -0.55 -12.14 16.66 5.30 0.09 -12.05 16 8 C -0.14 -2.26 5.87 -105.03 -0.62 -2.88 16 9 C -0.10 -1.32 8.58 -39.23 -0.34 -1.66 16 10 C -0.14 -1.75 9.91 -39.47 -0.39 -2.14 16 11 C 0.11 1.39 6.48 -38.89 -0.25 1.14 16 12 C 0.01 0.16 5.12 -83.62 -0.43 -0.27 16 13 C -0.02 -0.36 8.97 -38.90 -0.35 -0.71 16 14 N -0.49 -5.46 4.86 -178.68 -0.87 -6.33 16 15 C 0.02 0.20 9.22 60.07 0.55 0.75 16 16 C 0.02 0.13 6.02 -3.68 -0.02 0.11 16 17 C 0.02 0.16 7.06 37.38 0.26 0.42 16 18 O -0.31 -3.58 10.39 -19.78 -0.21 -3.78 16 19 C 0.08 1.46 6.58 -2.53 -0.02 1.44 16 20 C 0.17 3.15 3.47 -65.78 -0.23 2.92 16 21 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 22 N -0.71 -16.71 4.59 -51.36 -0.24 -16.95 16 23 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 26 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 27 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.22 6.48 -51.93 -0.34 0.89 16 34 H 0.08 1.15 6.28 -51.93 -0.33 0.82 16 35 H 0.07 0.77 6.81 -51.93 -0.35 0.42 16 36 H 0.17 1.99 2.77 -57.63 -0.16 1.83 16 37 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.14 2.26 7.65 -52.49 -0.40 1.86 16 39 H 0.03 0.26 6.84 -51.93 -0.35 -0.09 16 40 H 0.08 0.75 7.81 -51.93 -0.41 0.34 16 41 H 0.08 0.50 8.01 -51.93 -0.42 0.09 16 42 H 0.10 0.89 8.14 -51.94 -0.42 0.47 16 43 H 0.10 0.56 7.93 -51.93 -0.41 0.15 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.48 6.77 -51.93 -0.35 0.13 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.83 8.09 -51.93 -0.42 1.41 16 48 H 0.39 9.76 6.38 -40.82 -0.26 9.50 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -33.65 383.84 -9.60 -43.25 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.12 Total: 10.12 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.16 Total: 0.63 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.96 Total: -61.25 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.12 Total: -15.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.65 -9.60 -43.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.211 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds