Wall clock time and date at job start Wed Apr 1 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.64099 * 2 1 4 4 C 1.54323 * 110.71931 * 236.66285 * 2 1 3 5 5 N 1.47016 * 107.27080 * 219.44626 * 4 2 1 6 6 C 1.34786 * 125.64820 * 178.89902 * 5 4 2 7 7 O 1.21578 * 119.99839 * 174.69435 * 6 5 4 8 8 C 1.47612 * 119.99503 * 354.69121 * 6 5 4 9 9 C 1.39695 * 120.10219 * 7.95419 * 8 6 5 10 10 C 1.37700 * 119.88200 * 180.02562 * 9 8 6 11 11 C 1.39081 * 120.41218 * 359.92042 * 10 9 8 12 12 C 1.39247 * 120.10360 * 359.97049 * 11 10 9 13 13 C 1.38731 * 119.66979 * 359.89776 * 12 11 10 14 14 N 1.39904 * 121.84421 * 180.29028 * 12 11 10 15 15 C 1.46903 * 110.99795 * 104.78899 * 14 12 11 16 16 C 1.46759 * 112.11878 * 340.01570 * 14 12 11 17 17 C 1.53428 * 108.57330 * 50.23758 * 16 14 12 18 18 O 1.36011 * 118.58337 * 179.77800 * 11 10 9 19 19 C 1.47424 * 108.70425 * 358.93854 * 5 4 2 20 20 C 1.54905 * 104.82967 * 24.13121 * 19 5 4 21 21 H 1.08994 * 111.03494 * 204.89725 * 20 19 5 22 22 N 1.46505 * 111.00359 * 81.06541 * 20 19 5 23 23 C 1.36931 * 120.00201 * 92.80224 * 22 20 19 24 24 H 1.07997 * 120.00382 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99896 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00302 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00004 * 180.27587 * 25 23 22 28 28 H 1.48500 * 109.47571 * 179.72634 * 27 25 23 29 29 H 1.48500 * 109.47212 * 299.72448 * 27 25 23 30 30 H 1.48500 * 109.47490 * 59.72208 * 27 25 23 31 31 H 1.08994 * 109.46979 * 296.86055 * 1 2 3 32 32 H 1.09003 * 109.47204 * 56.85657 * 1 2 3 33 33 H 1.08994 * 109.47240 * 176.85502 * 1 2 3 34 34 H 1.09003 * 109.88506 * 338.86338 * 4 2 1 35 35 H 1.09000 * 109.88091 * 100.02961 * 4 2 1 36 36 H 1.07999 * 120.05884 * 0.05684 * 9 8 6 37 37 H 1.08003 * 119.79054 * 179.97438 * 10 9 8 38 38 H 1.07993 * 119.93995 * 180.13372 * 13 12 11 39 39 H 1.08998 * 109.47276 * 298.55319 * 15 14 12 40 40 H 1.09002 * 109.46613 * 58.54744 * 15 14 12 41 41 H 1.08992 * 109.47465 * 178.55202 * 15 14 12 42 42 H 1.08989 * 109.61927 * 290.50720 * 16 14 12 43 43 H 1.08999 * 109.61777 * 169.96105 * 16 14 12 44 44 H 1.09005 * 109.76552 * 177.05676 * 17 16 14 45 45 H 1.08993 * 109.77520 * 56.26608 * 17 16 14 46 46 H 1.08994 * 110.36696 * 265.29145 * 19 5 4 47 47 H 1.09007 * 110.36506 * 142.96766 * 19 5 4 48 48 H 0.97005 * 119.99579 * 272.80282 * 22 20 19 49 49 H 0.96992 * 120.00126 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2444 -1.5520 -0.7364 6 6 3.9914 -2.3874 -1.4853 7 8 4.9950 -2.8898 -1.0180 8 6 3.5907 -2.6921 -2.8730 9 6 2.5375 -1.9932 -3.4677 10 6 2.1672 -2.2815 -4.7623 11 6 2.8366 -3.2643 -5.4837 12 6 3.8890 -3.9645 -4.8998 13 6 4.2671 -3.6752 -3.5967 14 7 4.5912 -4.9558 -5.5938 15 6 5.9109 -4.4681 -6.0163 16 6 3.8310 -5.4734 -6.7375 17 6 3.3332 -4.2856 -7.5714 18 8 2.4370 -3.5219 -6.7580 19 6 3.4632 -1.2486 0.6896 20 6 2.0790 -0.7934 1.2151 21 1 2.1844 -0.1485 2.0874 22 7 1.2271 -1.9463 1.5177 23 6 1.2021 -2.4653 2.7846 24 1 1.8100 -2.0246 3.5609 25 6 0.3946 -3.5573 3.0714 26 7 -0.3468 -4.0942 2.1256 27 14 0.3546 -4.2606 4.8015 28 1 -0.5842 -5.4103 4.8470 29 1 1.7154 -4.7175 5.1817 30 1 -0.0991 -3.2132 5.7514 31 1 -0.3633 0.4643 0.9167 32 1 -0.3634 0.5619 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4785 -1.5751 35 1 2.3741 -0.1058 -1.9975 36 1 2.0150 -1.2277 -2.9133 37 1 1.3525 -1.7405 -5.2205 38 1 5.0842 -4.2141 -3.1403 39 1 5.7865 -3.6208 -6.6905 40 1 6.4799 -4.1552 -5.1408 41 1 6.4456 -5.2664 -6.5309 42 1 2.9794 -6.0517 -6.3793 43 1 4.4748 -6.1056 -7.3490 44 1 2.8096 -4.6495 -8.4555 45 1 4.1781 -3.6659 -7.8714 46 1 4.1931 -0.4466 0.7992 47 1 3.7960 -2.1406 1.2205 48 1 0.6808 -2.3419 0.8206 49 1 -0.9113 -4.8570 2.3261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054793683.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:23 Heat of formation + Delta-G solvation = -10.547758 kcal Electronic energy + Delta-G solvation = -31054.194199 eV Core-core repulsion = 26982.201512 eV Total energy + Delta-G solvation = -4071.992687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.33697 -41.30557 -39.16881 -38.14792 -37.60057 -35.78839 -33.87443 -32.48313 -31.95350 -31.63872 -30.09383 -29.13009 -27.59702 -26.64521 -25.79543 -25.42067 -24.08917 -23.22877 -21.64718 -20.93795 -20.51677 -19.40078 -18.95372 -18.44170 -17.94631 -17.35335 -16.90922 -16.57165 -16.40682 -16.04741 -15.74593 -15.67815 -15.53785 -15.31083 -14.92365 -14.82454 -14.68061 -14.66466 -14.24001 -14.06273 -13.44793 -13.40247 -13.26968 -13.14596 -13.08709 -12.92053 -12.87792 -12.75743 -12.54434 -12.28113 -12.22254 -12.11985 -11.97140 -11.85567 -11.43819 -11.19011 -11.01535 -10.94075 -10.51273 -9.78040 -9.44306 -9.07062 -8.94553 -7.93321 -5.20175 -0.21516 0.18820 1.46284 1.49220 1.54282 1.70906 1.99711 2.14984 2.56265 2.58128 2.72863 3.34964 3.40842 3.48275 3.59846 3.76584 3.87829 3.92284 3.94426 4.01032 4.10716 4.15030 4.25785 4.27354 4.34628 4.42709 4.44382 4.51070 4.60063 4.72412 4.72962 4.74200 4.80392 4.85661 4.88059 4.96222 4.99063 5.04153 5.05871 5.21623 5.26639 5.28673 5.39616 5.48872 5.53730 5.68425 5.77481 5.88678 6.28706 6.28860 6.53625 7.09834 7.36195 8.12178 8.34244 9.29437 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002850 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.944966 B = 9823.091827 C =10238.701610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 H 0.123 0.877 4 C 0.091 3.909 5 N -0.598 5.598 6 C 0.564 3.436 7 O -0.596 6.596 8 C -0.163 4.163 9 C -0.093 4.093 10 C -0.138 4.138 11 C 0.106 3.894 12 C 0.013 3.987 13 C -0.042 4.042 14 N -0.509 5.509 15 C 0.024 3.976 16 C 0.013 3.987 17 C 0.016 3.984 18 O -0.315 6.315 19 C 0.083 3.917 20 C 0.160 3.840 21 H 0.084 0.916 22 N -0.718 5.718 23 C -0.239 4.239 24 H 0.077 0.923 25 C -0.073 4.073 26 N -0.966 5.966 27 Si 0.966 3.034 28 H -0.298 1.298 29 H -0.287 1.287 30 H -0.273 1.273 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.187 0.813 37 H 0.164 0.836 38 H 0.120 0.880 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.146 0.854 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.376 0.624 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 7.567 -23.491 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.141 0.859 4 C -0.030 4.030 5 N -0.329 5.329 6 C 0.355 3.645 7 O -0.479 6.479 8 C -0.167 4.167 9 C -0.111 4.111 10 C -0.156 4.156 11 C 0.057 3.943 12 C -0.083 4.083 13 C -0.062 4.062 14 N -0.226 5.226 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.060 4.060 18 O -0.228 6.228 19 C -0.042 4.042 20 C 0.049 3.951 21 H 0.102 0.898 22 N -0.357 5.357 23 C -0.371 4.371 24 H 0.095 0.905 25 C -0.265 4.265 26 N -0.616 5.616 27 Si 0.796 3.204 28 H -0.225 1.225 29 H -0.213 1.213 30 H -0.199 1.199 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.204 0.796 37 H 0.182 0.818 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.150 0.850 44 H 0.164 0.836 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.053 0.947 48 H 0.209 0.791 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.089 6.868 -22.902 24.938 hybrid contribution 0.042 -0.960 0.697 1.187 sum 7.131 5.908 -22.204 24.058 Atomic orbital electron populations 1.21545 0.93269 1.01311 1.02270 1.22602 0.97048 0.99860 0.92535 0.85943 1.22869 0.87113 0.94839 0.98207 1.48257 1.29804 1.43368 1.11453 1.18279 0.82330 0.77835 0.86045 1.90700 1.28052 1.54418 1.74711 1.19605 1.01312 1.02261 0.93482 1.22748 0.94098 0.99452 0.94794 1.20753 1.02667 0.97975 0.94229 1.19475 0.96082 0.93771 0.84969 1.18604 0.99434 0.95857 0.94453 1.20794 0.98560 0.95191 0.91702 1.59152 1.04930 1.32509 1.26028 1.22652 0.87919 1.00658 1.00865 1.23125 0.99823 0.97472 0.90931 1.23913 0.94911 0.93114 0.94058 1.86271 1.45668 1.70677 1.20178 1.23182 1.00959 0.99644 0.80437 1.21678 0.87833 0.88860 0.96692 0.89825 1.42458 1.50167 1.34152 1.08910 1.19593 1.19505 1.09318 0.88685 0.90549 1.25464 1.00293 0.99799 1.00955 1.69792 1.32102 1.26260 1.33470 0.85318 0.76788 0.77646 0.80642 1.22496 1.21349 1.19881 0.92954 0.89868 0.94722 0.90749 0.86874 0.79645 0.81803 0.86190 0.94021 0.91836 0.87879 0.89841 0.85015 0.83592 0.90445 0.90049 0.94701 0.79072 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.71 71.98 0.63 -2.75 16 2 C -0.10 -2.60 3.42 -9.61 -0.03 -2.63 16 3 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.09 2.35 4.45 86.73 0.39 2.74 16 5 N -0.60 -21.06 3.33 -828.02 -2.75 -23.81 16 6 C 0.56 22.32 7.80 86.72 0.68 23.00 16 7 O -0.60 -28.35 16.66 -3.96 -0.07 -28.42 16 8 C -0.16 -5.36 5.87 -20.13 -0.12 -5.48 16 9 C -0.09 -2.37 8.58 22.49 0.19 -2.17 16 10 C -0.14 -3.12 9.91 22.34 0.22 -2.90 16 11 C 0.11 2.59 6.48 22.71 0.15 2.74 16 12 C 0.01 0.35 5.12 38.21 0.20 0.54 16 13 C -0.04 -1.34 8.97 22.71 0.20 -1.14 16 14 N -0.51 -10.94 4.86 -719.23 -3.49 -14.43 16 15 C 0.02 0.39 9.22 127.69 1.18 1.57 16 16 C 0.01 0.19 6.02 86.47 0.52 0.72 16 17 C 0.02 0.20 7.06 72.13 0.51 0.71 16 18 O -0.31 -6.48 10.39 -93.67 -0.97 -7.45 16 19 C 0.08 3.12 6.58 86.85 0.57 3.69 16 20 C 0.16 5.79 3.47 46.38 0.16 5.95 16 21 H 0.08 2.89 8.09 -2.39 -0.02 2.87 16 22 N -0.72 -34.55 4.59 -316.39 -1.45 -36.01 16 23 C -0.24 -13.07 9.96 84.03 0.84 -12.23 16 24 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 25 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 26 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 27 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 28 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 29 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 30 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.18 6.48 -2.39 -0.02 1.16 16 34 H 0.07 2.04 6.28 -2.39 -0.01 2.03 16 35 H 0.11 2.02 6.81 -2.39 -0.02 2.01 16 36 H 0.19 3.87 2.77 -7.74 -0.02 3.85 16 37 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.12 4.25 7.65 -2.91 -0.02 4.23 16 39 H 0.04 0.59 6.84 -2.39 -0.02 0.58 16 40 H 0.06 1.22 7.81 -2.39 -0.02 1.21 16 41 H 0.10 1.10 8.01 -2.39 -0.02 1.08 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.13 1.03 7.93 -2.39 -0.02 1.01 16 44 H 0.15 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.08 0.84 6.77 -2.39 -0.02 0.82 16 46 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.03 1.62 8.09 -2.38 -0.02 1.60 16 48 H 0.38 19.58 6.38 -92.70 -0.59 18.99 16 49 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.63 383.84 0.69 -77.93 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.38 Total: 33.61 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.74 Total: 8.63 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -7.42 Total: -133.29 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.04 Total: -35.87 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.63 0.69 -77.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793683.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.387 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds