Wall clock time and date at job start Wed Apr 1 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21287 * 119.99659 * 2 1 4 4 N 1.34778 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.39916 * 119.99889 * 184.62174 * 4 2 1 6 6 C 1.38874 * 120.06962 * 144.91436 * 5 4 2 7 7 C 1.38117 * 119.92888 * 180.23199 * 6 5 4 8 8 C 1.38285 * 120.06694 * 359.47026 * 7 6 5 9 9 C 1.50708 * 119.92745 * 180.25456 * 8 7 6 10 10 C 1.50702 * 109.47024 * 270.29958 * 9 8 7 11 11 O 1.21292 * 119.99877 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00293 * 179.97438 * 10 9 8 13 13 C 1.47023 * 125.64407 * 0.02562 * 12 10 9 14 14 C 1.54331 * 107.27149 * 181.02303 * 13 12 10 15 15 H 1.09002 * 110.71722 * 263.64861 * 14 13 12 16 16 N 1.46495 * 110.71847 * 140.56002 * 14 13 12 17 17 C 1.36933 * 120.00375 * 86.45852 * 16 14 13 18 18 H 1.07993 * 120.00062 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00027 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46737 * 59.99882 * 21 19 17 23 23 H 1.48495 * 109.47436 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46790 * 300.00023 * 21 19 17 25 25 C 1.55150 * 102.94243 * 22.19128 * 14 13 12 26 26 H 1.09005 * 111.00367 * 82.57076 * 25 14 13 27 27 C 1.52997 * 111.00781 * 206.38907 * 25 14 13 28 28 C 1.47419 * 125.65312 * 179.71380 * 12 10 9 29 29 C 1.38276 * 120.14376 * 0.55369 * 8 7 6 30 30 C 1.38119 * 120.07035 * 359.70259 * 29 8 7 31 31 H 1.09008 * 109.46855 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47037 * 299.99112 * 1 2 3 33 33 H 1.08994 * 109.47239 * 59.99548 * 1 2 3 34 34 H 0.97000 * 120.00148 * 4.62785 * 4 2 1 35 35 H 1.07993 * 120.03857 * 359.96099 * 6 5 4 36 36 H 1.08000 * 119.96381 * 179.72604 * 7 6 5 37 37 H 1.08994 * 109.47015 * 30.29517 * 9 8 7 38 38 H 1.08993 * 109.47041 * 150.29943 * 9 8 7 39 39 H 1.08998 * 109.88871 * 300.43837 * 13 12 10 40 40 H 1.09006 * 109.88552 * 61.45007 * 13 12 10 41 41 H 0.97005 * 119.99229 * 266.44805 * 16 14 13 42 42 H 0.97003 * 120.00156 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.47207 * 59.99719 * 27 25 14 44 44 H 1.08995 * 109.47281 * 180.02562 * 27 25 14 45 45 H 1.09004 * 109.47117 * 300.00199 * 27 25 14 46 46 H 1.08999 * 110.36953 * 274.74871 * 28 12 10 47 47 H 1.09003 * 110.36710 * 37.07695 * 28 12 10 48 48 H 1.07998 * 119.96836 * 179.72004 * 29 8 7 49 49 H 1.07999 * 120.03377 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1692 0.0971 6 6 4.2240 -2.1810 0.7942 7 6 5.6017 -2.1774 0.8928 8 6 6.3369 -1.1739 0.2891 9 6 7.8404 -1.1763 0.3938 10 6 8.2596 -0.4087 1.6211 11 8 7.4202 0.0907 2.3402 12 7 9.5672 -0.2780 1.9202 13 6 10.6840 -0.8303 1.1396 14 6 11.9876 -0.4518 1.8740 15 1 12.4249 0.4491 1.4437 16 7 12.9450 -1.5600 1.8347 17 6 13.7916 -1.6960 0.7671 18 1 13.7532 -0.9866 -0.0463 19 6 14.6991 -2.7457 0.7302 20 7 14.7462 -3.6101 1.7218 21 14 15.8535 -2.9317 -0.7265 22 1 16.7026 -1.7191 -0.8431 23 1 16.7164 -4.1234 -0.5254 24 1 15.0587 -3.1008 -1.9695 25 6 11.5060 -0.1935 3.3260 26 1 11.4169 -1.1279 3.8802 27 6 12.4380 0.7820 4.0476 28 6 10.1148 0.4478 3.0806 29 6 5.6954 -0.1648 -0.4053 30 6 4.3177 -0.1597 -0.5031 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.6983 -2.0059 -0.0687 35 1 3.6507 -2.9673 1.2623 36 1 6.1054 -2.9616 1.4385 37 1 8.1977 -2.2033 0.4680 38 1 8.2670 -0.7061 -0.4921 39 1 10.5939 -1.9149 1.0797 40 1 10.6829 -0.4025 0.1370 41 1 12.9792 -2.1973 2.5653 42 1 15.3806 -4.3434 1.6962 43 1 12.4565 1.7309 3.5115 44 1 12.0775 0.9450 5.0632 45 1 13.4444 0.3647 4.0822 46 1 10.2186 1.5081 2.8504 47 1 9.4746 0.3087 3.9517 48 1 6.2721 0.6201 -0.8719 49 1 3.8172 0.6290 -1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054871976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:53 Heat of formation + Delta-G solvation = -32.837861 kcal Electronic energy + Delta-G solvation = -29308.713022 eV Core-core repulsion = 25235.753764 eV Total energy + Delta-G solvation = -4072.959258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.76395 -39.89263 -38.67515 -37.41017 -35.20768 -34.06301 -32.69373 -32.00106 -31.01811 -30.73535 -30.10148 -27.57036 -27.29245 -25.50060 -23.98322 -23.15863 -22.18115 -21.39627 -20.67133 -19.95353 -18.92849 -18.05641 -17.24052 -17.15218 -16.78602 -16.17037 -15.98634 -15.42245 -15.18431 -14.84780 -14.61772 -14.46963 -14.04318 -13.72629 -13.56645 -13.49124 -13.22870 -13.16465 -13.07265 -12.92224 -12.63756 -12.53999 -12.38740 -12.07444 -11.87534 -11.75549 -11.52142 -11.23042 -11.15630 -10.99878 -10.74142 -10.62019 -10.53175 -10.30083 -10.08046 -9.98413 -9.79331 -9.60350 -9.02101 -8.95190 -8.29307 -8.17975 -7.12066 -5.87527 -3.18472 1.12337 1.38670 2.25124 2.75736 2.88466 3.25997 3.37836 3.43165 3.43662 3.77847 4.32912 4.49579 4.65651 4.71343 4.76500 4.78351 4.92573 4.93724 5.13611 5.17105 5.18513 5.24525 5.27894 5.34147 5.44505 5.54490 5.61129 5.61653 5.63705 5.77806 5.83571 5.91153 5.97569 6.00381 6.13876 6.19325 6.20320 6.25686 6.37169 6.38042 6.47929 6.56764 6.59172 6.62796 6.86613 6.94175 7.05924 7.60213 7.77151 7.83994 8.29641 8.42936 9.41837 9.95764 10.30760 11.34191 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.001997 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.552979 B =14019.562685 C =14962.631660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.525 6.525 4 N -0.673 5.673 5 C 0.132 3.868 6 C -0.142 4.142 7 C -0.086 4.086 8 C -0.070 4.070 9 C -0.099 4.099 10 C 0.527 3.473 11 O -0.546 6.546 12 N -0.614 5.614 13 C 0.072 3.928 14 C 0.177 3.823 15 H 0.066 0.934 16 N -0.712 5.712 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.113 4.113 26 H 0.083 0.917 27 C -0.134 4.134 28 C 0.114 3.886 29 C -0.088 4.088 30 C -0.118 4.118 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.410 0.590 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.495 3.429 -2.684 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.295 3.705 3 O -0.400 6.400 4 N -0.319 5.319 5 C 0.039 3.961 6 C -0.162 4.162 7 C -0.105 4.105 8 C -0.071 4.071 9 C -0.138 4.138 10 C 0.316 3.684 11 O -0.424 6.424 12 N -0.348 5.348 13 C -0.054 4.054 14 C 0.064 3.936 15 H 0.084 0.916 16 N -0.352 5.352 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.204 4.204 20 N -0.576 5.576 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.133 4.133 26 H 0.102 0.898 27 C -0.191 4.191 28 C -0.009 4.009 29 C -0.106 4.106 30 C -0.138 4.138 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.245 0.755 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.141 0.859 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.517 4.447 -2.466 25.038 hybrid contribution 0.473 -0.949 -0.630 1.233 sum -24.044 3.498 -3.096 24.494 Atomic orbital electron populations 1.21853 0.90792 1.04477 1.05701 1.21020 0.90857 0.83261 0.75328 1.90759 1.70315 1.31284 1.47685 1.43631 1.05386 1.09787 1.73092 1.17718 0.82223 0.97550 0.98608 1.20788 0.94844 0.99858 1.00740 1.20784 0.93066 0.98459 0.98182 1.19349 0.94026 0.95391 0.98375 1.20637 0.92990 1.02572 0.97621 1.20156 0.80872 0.80688 0.86720 1.90704 1.50344 1.49421 1.51893 1.48561 1.05246 1.53660 1.27372 1.23350 0.87460 0.99310 0.95308 1.21245 0.88060 0.92575 0.91680 0.91620 1.42352 1.39239 1.29372 1.24197 1.19191 1.11695 1.08862 0.98235 0.91024 1.24762 0.99824 0.97742 0.98110 1.69650 1.39300 1.16784 1.31901 0.86271 0.80707 0.77134 0.82059 1.21166 1.21678 1.21162 1.22655 0.93310 0.99379 0.97933 0.89828 1.21612 1.00017 0.98446 0.99073 1.22287 0.94232 0.95600 0.88760 1.20898 0.93928 0.97272 0.98525 1.21163 0.93513 0.99066 1.00074 0.90368 0.88322 0.88418 0.75459 0.85836 0.85681 0.87806 0.87997 0.90776 0.92279 0.77869 0.93298 0.92848 0.93186 0.91345 0.91745 0.91061 0.85862 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.39 36.01 0.37 -0.33 16 2 C 0.51 4.63 7.78 -10.98 -0.09 4.54 16 3 O -0.53 -7.35 14.54 5.55 0.08 -7.27 16 4 N -0.67 -5.42 5.34 -9.86 -0.05 -5.47 16 5 C 0.13 1.51 6.30 -83.70 -0.53 0.98 16 6 C -0.14 -1.52 9.97 -39.39 -0.39 -1.92 16 7 C -0.09 -1.05 9.69 -39.61 -0.38 -1.43 16 8 C -0.07 -0.93 4.38 -104.59 -0.46 -1.39 16 9 C -0.10 -1.28 5.02 -29.03 -0.15 -1.42 16 10 C 0.53 8.57 7.84 -10.99 -0.09 8.48 16 11 O -0.55 -10.64 16.29 5.55 0.09 -10.55 16 12 N -0.61 -9.79 3.32 -170.37 -0.57 -10.35 16 13 C 0.07 1.18 6.24 -3.06 -0.02 1.16 16 14 C 0.18 3.20 3.05 -66.10 -0.20 3.00 16 15 H 0.07 1.21 8.02 -51.93 -0.42 0.79 16 16 N -0.71 -16.29 5.18 -51.66 -0.27 -16.56 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 21 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 25 C -0.11 -1.77 3.26 -88.35 -0.29 -2.05 16 26 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 27 C -0.13 -1.88 9.31 37.16 0.35 -1.53 16 28 C 0.11 1.73 6.38 -2.41 -0.02 1.71 16 29 C -0.09 -1.15 9.69 -39.61 -0.38 -1.54 16 30 C -0.12 -1.55 8.70 -39.39 -0.34 -1.89 16 31 H 0.08 0.11 7.92 -51.92 -0.41 -0.30 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.41 1.69 8.66 -40.82 -0.35 1.34 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.10 1.22 8.09 -51.93 -0.42 0.80 16 38 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.39 9.55 7.71 -40.82 -0.31 9.23 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 47 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 48 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 49 H 0.14 1.84 6.22 -52.49 -0.33 1.51 16 LS Contribution 407.94 15.07 6.15 6.15 Total: -1.00 -34.25 407.94 -9.40 -43.64 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.67 Total: 10.47 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.86 Total: -0.46 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.16 Total: -58.28 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.25 -9.40 -43.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054871976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.807 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds