Wall clock time and date at job start Wed Apr 1 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21287 * 119.99659 * 2 1 4 4 N 1.34778 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.39916 * 119.99889 * 184.62174 * 4 2 1 6 6 C 1.38874 * 120.06962 * 144.91436 * 5 4 2 7 7 C 1.38117 * 119.92888 * 180.23199 * 6 5 4 8 8 C 1.38285 * 120.06694 * 359.47026 * 7 6 5 9 9 C 1.50708 * 119.92745 * 180.25456 * 8 7 6 10 10 C 1.50702 * 109.47024 * 270.29958 * 9 8 7 11 11 O 1.21292 * 119.99877 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00293 * 179.97438 * 10 9 8 13 13 C 1.47023 * 125.64407 * 0.02562 * 12 10 9 14 14 C 1.54331 * 107.27149 * 181.02303 * 13 12 10 15 15 H 1.09002 * 110.71722 * 263.64861 * 14 13 12 16 16 N 1.46495 * 110.71847 * 140.56002 * 14 13 12 17 17 C 1.36933 * 120.00375 * 86.45852 * 16 14 13 18 18 H 1.07993 * 120.00062 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00027 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00037 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00214 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46737 * 59.99882 * 21 19 17 23 23 H 1.48495 * 109.47436 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46790 * 300.00023 * 21 19 17 25 25 C 1.55150 * 102.94243 * 22.19128 * 14 13 12 26 26 H 1.09005 * 111.00367 * 82.57076 * 25 14 13 27 27 C 1.52997 * 111.00781 * 206.38907 * 25 14 13 28 28 C 1.47419 * 125.65312 * 179.71380 * 12 10 9 29 29 C 1.38276 * 120.14376 * 0.55369 * 8 7 6 30 30 C 1.38119 * 120.07035 * 359.70259 * 29 8 7 31 31 H 1.09008 * 109.46855 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47037 * 299.99112 * 1 2 3 33 33 H 1.08994 * 109.47239 * 59.99548 * 1 2 3 34 34 H 0.97000 * 120.00148 * 4.62785 * 4 2 1 35 35 H 1.07993 * 120.03857 * 359.96099 * 6 5 4 36 36 H 1.08000 * 119.96381 * 179.72604 * 7 6 5 37 37 H 1.08994 * 109.47015 * 30.29517 * 9 8 7 38 38 H 1.08993 * 109.47041 * 150.29943 * 9 8 7 39 39 H 1.08998 * 109.88871 * 300.43837 * 13 12 10 40 40 H 1.09006 * 109.88552 * 61.45007 * 13 12 10 41 41 H 0.97005 * 119.99229 * 266.44805 * 16 14 13 42 42 H 0.97003 * 120.00156 * 180.02562 * 20 19 17 43 43 H 1.09003 * 109.47207 * 59.99719 * 27 25 14 44 44 H 1.08995 * 109.47281 * 180.02562 * 27 25 14 45 45 H 1.09004 * 109.47117 * 300.00199 * 27 25 14 46 46 H 1.08999 * 110.36953 * 274.74871 * 28 12 10 47 47 H 1.09003 * 110.36710 * 37.07695 * 28 12 10 48 48 H 1.07998 * 119.96836 * 179.72004 * 29 8 7 49 49 H 1.07999 * 120.03377 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1692 0.0971 6 6 4.2240 -2.1810 0.7942 7 6 5.6017 -2.1774 0.8928 8 6 6.3369 -1.1739 0.2891 9 6 7.8404 -1.1763 0.3938 10 6 8.2596 -0.4087 1.6211 11 8 7.4202 0.0907 2.3402 12 7 9.5672 -0.2780 1.9202 13 6 10.6840 -0.8303 1.1396 14 6 11.9876 -0.4518 1.8740 15 1 12.4249 0.4491 1.4437 16 7 12.9450 -1.5600 1.8347 17 6 13.7916 -1.6960 0.7671 18 1 13.7532 -0.9866 -0.0463 19 6 14.6991 -2.7457 0.7302 20 7 14.7462 -3.6101 1.7218 21 14 15.8535 -2.9317 -0.7265 22 1 16.7026 -1.7191 -0.8431 23 1 16.7164 -4.1234 -0.5254 24 1 15.0587 -3.1008 -1.9695 25 6 11.5060 -0.1935 3.3260 26 1 11.4169 -1.1279 3.8802 27 6 12.4380 0.7820 4.0476 28 6 10.1148 0.4478 3.0806 29 6 5.6954 -0.1648 -0.4053 30 6 4.3177 -0.1597 -0.5031 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.6983 -2.0059 -0.0687 35 1 3.6507 -2.9673 1.2623 36 1 6.1054 -2.9616 1.4385 37 1 8.1977 -2.2033 0.4680 38 1 8.2670 -0.7061 -0.4921 39 1 10.5939 -1.9149 1.0797 40 1 10.6829 -0.4025 0.1370 41 1 12.9792 -2.1973 2.5653 42 1 15.3806 -4.3434 1.6962 43 1 12.4565 1.7309 3.5115 44 1 12.0775 0.9450 5.0632 45 1 13.4444 0.3647 4.0822 46 1 10.2186 1.5081 2.8504 47 1 9.4746 0.3087 3.9517 48 1 6.2721 0.6201 -0.8719 49 1 3.8172 0.6290 -1.0453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054871976.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:52 Heat of formation + Delta-G solvation = -54.906410 kcal Electronic energy + Delta-G solvation = -29309.669986 eV Core-core repulsion = 25235.753764 eV Total energy + Delta-G solvation = -4073.916222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61550 -41.10937 -39.67538 -38.72401 -36.07885 -35.80678 -34.03745 -33.02019 -32.41916 -31.92493 -30.72295 -29.09127 -28.34317 -26.59714 -25.79775 -24.06613 -23.28689 -22.61798 -21.48541 -21.35590 -20.18509 -19.04642 -18.83537 -18.11130 -17.94748 -17.44701 -16.88743 -16.63760 -16.31089 -16.20094 -15.65515 -15.44290 -15.36342 -15.29235 -14.62393 -14.58477 -14.50586 -14.32627 -14.09221 -13.81823 -13.77789 -13.40525 -13.33707 -13.03293 -13.00310 -12.95335 -12.83368 -12.79333 -12.66042 -12.23741 -12.15379 -12.10401 -12.01399 -11.66083 -11.44981 -11.35792 -11.00048 -10.90445 -10.82371 -9.88031 -9.63056 -9.07126 -9.02315 -7.91304 -5.20871 0.20917 0.45279 1.52631 1.53523 1.53872 1.59631 1.60876 2.00924 2.14531 2.59278 2.81986 3.40099 3.47872 3.71760 3.76223 3.82678 3.90890 3.92494 3.98274 4.05523 4.24505 4.25707 4.39174 4.42105 4.46256 4.48870 4.55113 4.63088 4.63484 4.67403 4.70442 4.72496 4.90905 4.93055 5.04073 5.10286 5.11938 5.15725 5.22778 5.29906 5.32912 5.33447 5.49312 5.50202 5.58457 5.64148 6.04635 6.28973 6.44313 6.53610 7.13232 7.14138 7.37121 8.08795 8.32956 9.31199 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.001997 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.552979 B =14019.562685 C =14962.631660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.499 3.501 3 O -0.582 6.582 4 N -0.660 5.660 5 C 0.128 3.872 6 C -0.138 4.138 7 C -0.097 4.097 8 C -0.087 4.087 9 C -0.092 4.092 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.614 5.614 13 C 0.085 3.915 14 C 0.170 3.830 15 H 0.069 0.931 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.967 3.033 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.277 1.277 25 C -0.103 4.103 26 H 0.071 0.929 27 C -0.128 4.128 28 C 0.116 3.884 29 C -0.101 4.101 30 C -0.138 4.138 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.430 0.570 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.126 0.874 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.246 3.322 -3.260 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.290 3.710 3 O -0.461 6.461 4 N -0.307 5.307 5 C 0.034 3.966 6 C -0.158 4.158 7 C -0.116 4.116 8 C -0.088 4.088 9 C -0.131 4.131 10 C 0.316 3.684 11 O -0.461 6.461 12 N -0.347 5.347 13 C -0.041 4.041 14 C 0.060 3.940 15 H 0.087 0.913 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.099 0.901 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.203 1.203 25 C -0.122 4.122 26 H 0.090 0.910 27 C -0.186 4.186 28 C -0.007 4.007 29 C -0.120 4.120 30 C -0.158 4.158 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.270 0.730 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.208 0.792 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.144 0.856 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.317 4.344 -3.066 26.849 hybrid contribution 0.912 -0.854 -0.413 1.316 sum -25.406 3.490 -3.479 25.879 Atomic orbital electron populations 1.21892 0.86547 1.07038 1.06283 1.22010 0.92816 0.82449 0.73687 1.90739 1.71798 1.33283 1.50267 1.43625 1.04163 1.10817 1.72117 1.17895 0.83830 0.97009 0.97886 1.21104 0.94599 1.00170 0.99949 1.21077 0.93934 0.98526 0.98048 1.19445 0.94179 0.96005 0.99213 1.20648 0.93178 1.02808 0.96497 1.20696 0.80339 0.80192 0.87174 1.90686 1.51081 1.50981 1.53306 1.48599 1.05212 1.53520 1.27417 1.23027 0.86663 0.98699 0.95682 1.21424 0.87795 0.91087 0.93709 0.91331 1.42456 1.40024 1.30308 1.23227 1.19578 1.10942 1.08040 0.98594 0.90129 1.25483 1.01973 0.98197 1.00556 1.69801 1.40388 1.17588 1.33884 0.85305 0.78840 0.76596 0.79556 1.20590 1.22742 1.20308 1.22553 0.93908 0.99435 0.96350 0.91010 1.21570 0.98414 0.98289 1.00330 1.22316 0.93530 0.96180 0.88638 1.21019 0.94236 0.97669 0.99074 1.21206 0.93781 0.99708 1.01087 0.86860 0.87835 0.87512 0.72996 0.82620 0.84509 0.86526 0.86435 0.91910 0.90846 0.79229 0.94136 0.91535 0.91141 0.93318 0.90398 0.91178 0.85621 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.39 71.24 0.74 -0.18 16 2 C 0.50 8.61 7.78 87.66 0.68 9.29 16 3 O -0.58 -16.63 14.54 -3.05 -0.04 -16.67 16 4 N -0.66 -9.50 5.34 -303.50 -1.62 -11.12 16 5 C 0.13 2.80 6.30 38.15 0.24 3.04 16 6 C -0.14 -2.72 9.97 22.39 0.22 -2.49 16 7 C -0.10 -2.25 9.69 22.25 0.22 -2.03 16 8 C -0.09 -2.26 4.38 -19.84 -0.09 -2.35 16 9 C -0.09 -2.29 5.02 29.11 0.15 -2.14 16 10 C 0.53 16.66 7.84 87.66 0.69 17.35 16 11 O -0.58 -22.44 16.29 -3.07 -0.05 -22.49 16 12 N -0.61 -18.83 3.32 -811.32 -2.70 -21.53 16 13 C 0.08 2.70 6.24 86.73 0.54 3.24 16 14 C 0.17 6.00 3.05 46.18 0.14 6.15 16 15 H 0.07 2.41 8.02 -2.39 -0.02 2.39 16 16 N -0.72 -32.92 5.18 -317.34 -1.64 -34.56 16 17 C -0.24 -12.19 9.98 84.03 0.84 -11.35 16 18 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 20 N -0.97 -56.26 13.06 21.65 0.28 -55.98 16 21 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 25 C -0.10 -3.11 3.26 -9.32 -0.03 -3.14 16 26 H 0.07 2.37 8.00 -2.38 -0.02 2.35 16 27 C -0.13 -3.43 9.31 71.98 0.67 -2.75 16 28 C 0.12 3.36 6.38 86.94 0.55 3.91 16 29 C -0.10 -2.71 9.69 22.25 0.22 -2.50 16 30 C -0.14 -3.68 8.70 22.39 0.19 -3.48 16 31 H 0.11 -0.14 7.92 -2.38 -0.02 -0.16 16 32 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.43 2.31 8.66 -92.71 -0.80 1.50 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.12 2.58 8.09 -2.39 -0.02 2.56 16 38 H 0.12 2.51 8.08 -2.39 -0.02 2.50 16 39 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 40 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.38 18.80 7.71 -92.70 -0.72 18.08 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.07 1.59 8.07 -2.39 -0.02 1.57 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.08 2.07 7.99 -2.39 -0.02 2.05 16 47 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 48 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 49 H 0.12 3.55 6.22 -2.91 -0.02 3.53 16 Total: -1.00 -75.69 407.94 2.15 -73.54 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.55 Total: 35.72 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.44 Total: 7.26 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -5.68 Total: -123.19 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.09 Total: -39.16 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.69 2.15 -73.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054871976.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.633 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds