Wall clock time and date at job start Wed Apr 1 2020 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21275 * 119.99650 * 2 1 4 4 N 1.34768 * 119.99853 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00232 * 0.02562 * 4 2 1 6 6 C 1.39297 * 119.99759 * 179.97438 * 4 2 1 7 7 C 1.38847 * 120.16249 * 90.02184 * 6 4 2 8 8 C 1.38023 * 120.06868 * 179.97438 * 7 6 4 9 9 C 1.38556 * 120.40335 * 0.02562 * 8 7 6 10 10 C 1.37803 * 120.33251 * 359.69580 * 9 8 7 11 11 C 1.39683 * 119.91719 * 0.57302 * 10 9 8 12 12 C 1.47521 * 120.19691 * 179.72311 * 11 10 9 13 13 O 1.21590 * 120.00056 * 134.58925 * 12 11 10 14 14 N 1.34783 * 120.00158 * 314.59398 * 12 11 10 15 15 C 1.47421 * 125.64557 * 174.73362 * 14 12 11 16 16 C 1.54920 * 104.82886 * 204.16478 * 15 14 12 17 17 H 1.08999 * 111.00365 * 81.06691 * 16 15 14 18 18 C 1.52995 * 111.00099 * 204.91889 * 16 15 14 19 19 C 1.55157 * 101.57908 * 322.99260 * 16 15 14 20 20 H 1.09002 * 110.87039 * 153.93753 * 19 16 15 21 21 N 1.46503 * 110.71901 * 277.13620 * 19 16 15 22 22 C 1.36938 * 120.00055 * 199.97500 * 21 19 16 23 23 H 1.08004 * 119.99827 * 0.02562 * 22 21 19 24 24 C 1.38801 * 120.00147 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00072 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 180.28013 * 24 22 21 27 27 H 1.48501 * 109.47079 * 179.72567 * 26 24 22 28 28 H 1.48503 * 109.46892 * 299.72478 * 26 24 22 29 29 H 1.48501 * 109.47205 * 59.72475 * 26 24 22 30 30 C 1.47016 * 125.64557 * 354.77762 * 14 12 11 31 31 H 1.08995 * 109.46830 * 239.99863 * 1 2 3 32 32 H 1.08995 * 109.47082 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.46772 * 119.99843 * 1 2 3 34 34 H 1.09000 * 109.46838 * 269.99475 * 5 4 2 35 35 H 1.08997 * 109.47480 * 29.99901 * 5 4 2 36 36 H 1.09006 * 109.47332 * 150.00030 * 5 4 2 37 37 H 1.07999 * 119.96421 * 359.97438 * 7 6 4 38 38 H 1.08002 * 119.79546 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.83270 * 179.97438 * 9 8 7 40 40 H 1.07996 * 120.04018 * 180.30012 * 10 9 8 41 41 H 1.08993 * 110.37082 * 323.00052 * 15 14 12 42 42 H 1.08998 * 110.36754 * 85.21954 * 15 14 12 43 43 H 1.09005 * 109.47049 * 172.19941 * 18 16 15 44 44 H 1.09002 * 109.47732 * 292.19473 * 18 16 15 45 45 H 1.09005 * 109.47334 * 52.19670 * 18 16 15 46 46 H 0.97004 * 119.99696 * 19.98124 * 21 19 16 47 47 H 0.97003 * 120.00263 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.88487 * 59.48970 * 30 14 12 49 49 H 1.09001 * 110.01403 * 298.39084 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4484 -2.4359 -0.0017 6 6 3.5739 -1.1671 -0.0011 7 6 4.2720 -1.1678 1.1991 8 6 5.6522 -1.1683 1.1963 9 6 6.3510 -1.1676 -0.0001 10 6 5.6749 -1.1727 -1.2009 11 6 4.2782 -1.1665 -1.2140 12 6 3.5482 -1.1657 -2.4960 13 8 2.6017 -1.9117 -2.6571 14 7 3.9306 -0.3381 -3.4887 15 6 3.3650 -0.3104 -4.8498 16 6 4.4830 0.3003 -5.7314 17 1 5.2251 -0.4522 -5.9980 18 6 3.8972 0.9572 -6.9828 19 6 5.0871 1.3633 -4.7762 20 1 6.1282 1.5649 -5.0283 21 7 4.2992 2.5980 -4.8100 22 6 4.8532 3.7757 -4.3842 23 1 5.8711 3.7944 -4.0239 24 6 4.1065 4.9453 -4.4157 25 7 2.8658 4.9224 -4.8544 26 14 4.8648 6.5533 -3.8422 27 1 3.8701 7.6471 -3.9814 28 1 5.2690 6.4299 -2.4186 29 1 6.0582 6.8611 -4.6707 30 6 4.9813 0.6857 -3.3937 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0276 0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 1.2665 -2.7512 1.0257 35 1 0.4962 -2.3053 -0.5157 36 1 2.0377 -3.1952 -0.5158 37 1 3.7344 -1.1680 2.1358 38 1 6.1908 -1.1685 2.1325 39 1 7.4310 -1.1676 0.0085 40 1 6.2244 -1.1770 -2.1306 41 1 3.1285 -1.3208 -5.1831 42 1 2.4733 0.3159 -4.8774 43 1 4.6832 1.4960 -7.5121 44 1 3.4805 0.1896 -7.6350 45 1 3.1106 1.6540 -6.6932 46 1 3.3850 2.5811 -5.1340 47 1 2.3438 5.7398 -4.8761 48 1 5.9319 0.2186 -3.1362 49 1 4.7148 1.4248 -2.6382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054952399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:12 Heat of formation + Delta-G solvation = -8.687063 kcal Electronic energy + Delta-G solvation = -31902.712346 eV Core-core repulsion = 27830.800345 eV Total energy + Delta-G solvation = -4071.912001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.82760 -39.51166 -38.31545 -37.32343 -35.48353 -33.89143 -32.54573 -31.17334 -31.10482 -30.38710 -28.94548 -27.69701 -26.75488 -26.17346 -24.04177 -23.41745 -22.81352 -21.83393 -20.01042 -19.28696 -19.01154 -17.59648 -17.27770 -16.79746 -16.57693 -16.19410 -15.84065 -15.46251 -14.89520 -14.59581 -14.51545 -14.25833 -13.85679 -13.65641 -13.45859 -13.17876 -13.03651 -12.94148 -12.76784 -12.72813 -12.46874 -12.31819 -12.13723 -12.11166 -11.94762 -11.87751 -11.57345 -11.30975 -11.08970 -10.86832 -10.71658 -10.44701 -10.24956 -9.92128 -9.83508 -9.69590 -9.58301 -9.04990 -8.93238 -8.88516 -8.85205 -8.19882 -7.00323 -5.77332 -3.07082 0.91720 1.19650 2.67483 2.91237 2.97187 3.28261 3.45548 3.50671 3.50905 3.73595 4.58814 4.61544 4.72070 4.78989 4.87419 5.00232 5.06614 5.21202 5.23602 5.23983 5.26808 5.32754 5.35082 5.40994 5.47853 5.56550 5.69444 5.70112 5.75218 5.82150 5.86525 5.90992 5.97955 6.12159 6.19909 6.25458 6.29311 6.31877 6.36399 6.40055 6.47734 6.57751 6.65976 6.82014 6.91867 6.94099 7.29796 7.69172 7.87342 8.24935 8.38903 8.41125 9.52358 10.06415 10.41018 11.44912 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.004029 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.213960 B = 6947.897513 C = 7408.507500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.521 6.521 4 N -0.577 5.577 5 C 0.094 3.906 6 C 0.187 3.813 7 C -0.117 4.117 8 C -0.096 4.096 9 C -0.120 4.120 10 C -0.082 4.082 11 C -0.112 4.112 12 C 0.575 3.425 13 O -0.547 6.547 14 N -0.597 5.597 15 C 0.117 3.883 16 C -0.113 4.113 17 H 0.079 0.921 18 C -0.130 4.130 19 C 0.173 3.827 20 H 0.070 0.930 21 N -0.710 5.710 22 C -0.246 4.246 23 H 0.071 0.929 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.285 1.285 29 H -0.285 1.285 30 C 0.068 3.932 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.387 0.613 47 H 0.256 0.744 48 H 0.056 0.944 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -17.962 8.875 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.301 3.699 3 O -0.396 6.396 4 N -0.309 5.309 5 C -0.048 4.048 6 C 0.096 3.904 7 C -0.137 4.137 8 C -0.115 4.115 9 C -0.138 4.138 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.363 3.637 13 O -0.427 6.427 14 N -0.328 5.328 15 C -0.005 4.005 16 C -0.133 4.133 17 H 0.097 0.903 18 C -0.188 4.188 19 C 0.060 3.940 20 H 0.088 0.912 21 N -0.351 5.351 22 C -0.377 4.377 23 H 0.089 0.911 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.212 1.212 30 C -0.058 4.058 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.222 0.778 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.458 -17.622 8.874 19.784 hybrid contribution 0.088 0.922 0.374 0.999 sum 1.546 -16.700 9.248 19.152 Atomic orbital electron populations 1.21909 0.91149 1.05633 1.04061 1.20990 0.90831 0.82653 0.75458 1.90817 1.70575 1.30642 1.47523 1.45134 1.03374 1.07504 1.74871 1.21784 0.97458 0.84748 1.00811 1.17322 0.83061 0.98517 0.91529 1.21236 0.94522 1.00905 0.97021 1.21149 0.93520 0.98335 0.98462 1.21121 1.00298 1.00415 0.91998 1.21325 0.92292 0.97418 0.99053 1.20229 0.94169 1.04052 0.93197 1.17697 0.83282 0.80015 0.82707 1.90703 1.28199 1.42141 1.81650 1.48305 1.37984 1.34910 1.11644 1.22258 0.96922 1.00627 0.80689 1.22617 0.97150 0.97920 0.95654 0.90307 1.21541 1.01868 0.99855 0.95552 1.21213 0.96082 0.86838 0.89838 0.91185 1.42430 1.14223 1.02098 1.76373 1.19150 0.97019 0.85722 1.35804 0.91129 1.24722 0.96052 0.97916 1.01612 1.69642 1.08440 1.27488 1.52086 0.86285 0.77920 0.83485 0.78586 1.21702 1.21189 1.21219 1.23469 0.88782 0.89903 1.03645 0.89499 0.88802 0.89066 0.92930 0.90506 0.90413 0.85465 0.85292 0.85151 0.84800 0.91341 0.91286 0.92029 0.93686 0.91192 0.77770 0.93386 0.92630 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.87 36.01 0.32 -1.66 16 2 C 0.51 8.54 7.75 -10.99 -0.09 8.45 16 3 O -0.52 -11.45 17.05 5.56 0.09 -11.35 16 4 N -0.58 -8.50 1.95 -120.60 -0.24 -8.73 16 5 C 0.09 1.01 9.23 59.85 0.55 1.56 16 6 C 0.19 2.89 4.42 -83.48 -0.37 2.52 16 7 C -0.12 -1.50 9.96 -39.43 -0.39 -1.89 16 8 C -0.10 -1.04 10.03 -39.54 -0.40 -1.43 16 9 C -0.12 -1.33 10.02 -39.62 -0.40 -1.73 16 10 C -0.08 -1.10 8.39 -39.20 -0.33 -1.43 16 11 C -0.11 -1.83 5.38 -104.81 -0.56 -2.39 16 12 C 0.57 10.58 7.13 -12.47 -0.09 10.50 16 13 O -0.55 -10.66 15.30 5.29 0.08 -10.58 16 14 N -0.60 -10.90 3.33 -171.76 -0.57 -11.47 16 15 C 0.12 2.02 6.33 -2.53 -0.02 2.01 16 16 C -0.11 -1.81 3.51 -88.47 -0.31 -2.12 16 17 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.13 -2.08 8.85 37.16 0.33 -1.75 16 19 C 0.17 3.30 3.37 -66.09 -0.22 3.07 16 20 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 21 N -0.71 -17.25 4.61 -51.65 -0.24 -17.49 16 22 C -0.25 -6.71 9.98 -15.06 -0.15 -6.86 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 25 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 26 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 C 0.07 1.25 5.74 -3.07 -0.02 1.23 16 31 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 33 H 0.09 0.99 7.40 -51.93 -0.38 0.61 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 36 H 0.08 0.90 7.64 -51.93 -0.40 0.51 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.13 1.63 6.22 -52.49 -0.33 1.30 16 41 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 42 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.31 6.38 -51.93 -0.33 0.98 16 46 H 0.39 10.09 6.10 -40.82 -0.25 9.84 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.06 0.86 5.64 -51.93 -0.29 0.57 16 49 H 0.08 1.79 8.04 -51.93 -0.42 1.37 16 LS Contribution 397.82 15.07 5.99 5.99 Total: -1.00 -35.72 397.82 -8.75 -44.47 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.34 Total: 11.16 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.23 Total: 7.79 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.32 Total: -65.06 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.18 Total: -21.94 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.72 -8.75 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.781 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds