Wall clock time and date at job start Wed Apr 1 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21275 * 119.99650 * 2 1 4 4 N 1.34768 * 119.99853 * 180.02562 * 2 1 3 5 5 C 1.46499 * 120.00232 * 0.02562 * 4 2 1 6 6 C 1.39297 * 119.99759 * 179.97438 * 4 2 1 7 7 C 1.38847 * 120.16249 * 90.02184 * 6 4 2 8 8 C 1.38023 * 120.06868 * 179.97438 * 7 6 4 9 9 C 1.38556 * 120.40335 * 0.02562 * 8 7 6 10 10 C 1.37803 * 120.33251 * 359.69580 * 9 8 7 11 11 C 1.39683 * 119.91719 * 0.57302 * 10 9 8 12 12 C 1.47521 * 120.19691 * 179.72311 * 11 10 9 13 13 O 1.21590 * 120.00056 * 134.58925 * 12 11 10 14 14 N 1.34783 * 120.00158 * 314.59398 * 12 11 10 15 15 C 1.47421 * 125.64557 * 174.73362 * 14 12 11 16 16 C 1.54920 * 104.82886 * 204.16478 * 15 14 12 17 17 H 1.08999 * 111.00365 * 81.06691 * 16 15 14 18 18 C 1.52995 * 111.00099 * 204.91889 * 16 15 14 19 19 C 1.55157 * 101.57908 * 322.99260 * 16 15 14 20 20 H 1.09002 * 110.87039 * 153.93753 * 19 16 15 21 21 N 1.46503 * 110.71901 * 277.13620 * 19 16 15 22 22 C 1.36938 * 120.00055 * 199.97500 * 21 19 16 23 23 H 1.08004 * 119.99827 * 0.02562 * 22 21 19 24 24 C 1.38801 * 120.00147 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00072 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 180.28013 * 24 22 21 27 27 H 1.48501 * 109.47079 * 179.72567 * 26 24 22 28 28 H 1.48503 * 109.46892 * 299.72478 * 26 24 22 29 29 H 1.48501 * 109.47205 * 59.72475 * 26 24 22 30 30 C 1.47016 * 125.64557 * 354.77762 * 14 12 11 31 31 H 1.08995 * 109.46830 * 239.99863 * 1 2 3 32 32 H 1.08995 * 109.47082 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.46772 * 119.99843 * 1 2 3 34 34 H 1.09000 * 109.46838 * 269.99475 * 5 4 2 35 35 H 1.08997 * 109.47480 * 29.99901 * 5 4 2 36 36 H 1.09006 * 109.47332 * 150.00030 * 5 4 2 37 37 H 1.07999 * 119.96421 * 359.97438 * 7 6 4 38 38 H 1.08002 * 119.79546 * 179.97438 * 8 7 6 39 39 H 1.08000 * 119.83270 * 179.97438 * 9 8 7 40 40 H 1.07996 * 120.04018 * 180.30012 * 10 9 8 41 41 H 1.08993 * 110.37082 * 323.00052 * 15 14 12 42 42 H 1.08998 * 110.36754 * 85.21954 * 15 14 12 43 43 H 1.09005 * 109.47049 * 172.19941 * 18 16 15 44 44 H 1.09002 * 109.47732 * 292.19473 * 18 16 15 45 45 H 1.09005 * 109.47334 * 52.19670 * 18 16 15 46 46 H 0.97004 * 119.99696 * 19.98124 * 21 19 16 47 47 H 0.97003 * 120.00263 * 179.97438 * 25 24 22 48 48 H 1.08997 * 109.88487 * 59.48970 * 30 14 12 49 49 H 1.09001 * 110.01403 * 298.39084 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4484 -2.4359 -0.0017 6 6 3.5739 -1.1671 -0.0011 7 6 4.2720 -1.1678 1.1991 8 6 5.6522 -1.1683 1.1963 9 6 6.3510 -1.1676 -0.0001 10 6 5.6749 -1.1727 -1.2009 11 6 4.2782 -1.1665 -1.2140 12 6 3.5482 -1.1657 -2.4960 13 8 2.6017 -1.9117 -2.6571 14 7 3.9306 -0.3381 -3.4887 15 6 3.3650 -0.3104 -4.8498 16 6 4.4830 0.3003 -5.7314 17 1 5.2251 -0.4522 -5.9980 18 6 3.8972 0.9572 -6.9828 19 6 5.0871 1.3633 -4.7762 20 1 6.1282 1.5649 -5.0283 21 7 4.2992 2.5980 -4.8100 22 6 4.8532 3.7757 -4.3842 23 1 5.8711 3.7944 -4.0239 24 6 4.1065 4.9453 -4.4157 25 7 2.8658 4.9224 -4.8544 26 14 4.8648 6.5533 -3.8422 27 1 3.8701 7.6471 -3.9814 28 1 5.2690 6.4299 -2.4186 29 1 6.0582 6.8611 -4.6707 30 6 4.9813 0.6857 -3.3937 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0276 0.0005 33 1 -0.3633 -0.5138 -0.8900 34 1 1.2665 -2.7512 1.0257 35 1 0.4962 -2.3053 -0.5157 36 1 2.0377 -3.1952 -0.5158 37 1 3.7344 -1.1680 2.1358 38 1 6.1908 -1.1685 2.1325 39 1 7.4310 -1.1676 0.0085 40 1 6.2244 -1.1770 -2.1306 41 1 3.1285 -1.3208 -5.1831 42 1 2.4733 0.3159 -4.8774 43 1 4.6832 1.4960 -7.5121 44 1 3.4805 0.1896 -7.6350 45 1 3.1106 1.6540 -6.6932 46 1 3.3850 2.5811 -5.1340 47 1 2.3438 5.7398 -4.8761 48 1 5.9319 0.2186 -3.1362 49 1 4.7148 1.4248 -2.6382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054952399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:11 Heat of formation + Delta-G solvation = -31.750478 kcal Electronic energy + Delta-G solvation = -31903.712450 eV Core-core repulsion = 27830.800345 eV Total energy + Delta-G solvation = -4072.912106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.01526 -40.88510 -39.52457 -38.71586 -36.67777 -35.71340 -34.07975 -32.49923 -32.18355 -31.93887 -29.95772 -29.38133 -27.81287 -27.41989 -25.87981 -24.78979 -23.83640 -23.23526 -21.22141 -20.76679 -20.21643 -19.46213 -18.51374 -18.17651 -17.70750 -17.39609 -17.28594 -16.73569 -16.42469 -15.98934 -15.88701 -15.52719 -15.31873 -15.18716 -14.64447 -14.63446 -14.40464 -14.16366 -14.02583 -13.82556 -13.63618 -13.47541 -13.37770 -13.21809 -13.12337 -13.07175 -12.94679 -12.89456 -12.76237 -12.38952 -12.32706 -12.20934 -12.02152 -11.49388 -11.41760 -11.17940 -11.07385 -10.91477 -10.05821 -9.99473 -9.87864 -9.66339 -9.02789 -7.94429 -5.22550 -0.13277 0.22415 1.42701 1.44869 1.48955 1.53586 1.57658 1.92359 2.00006 2.55437 2.68382 3.32138 3.36881 3.65070 3.68349 3.80525 3.86778 3.90073 4.02841 4.06661 4.12868 4.31529 4.32618 4.36049 4.37935 4.43940 4.49461 4.55511 4.56330 4.65450 4.66364 4.80489 4.81279 4.85376 4.91191 4.95600 4.97669 5.15062 5.18951 5.22084 5.28919 5.35574 5.38450 5.50706 5.51678 5.56885 5.91584 6.18701 6.26888 6.44065 6.98375 7.04180 7.34081 8.08429 8.30584 9.28987 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.004029 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.213960 B = 6947.897513 C = 7408.507500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.498 3.502 3 O -0.591 6.591 4 N -0.574 5.574 5 C 0.090 3.910 6 C 0.157 3.843 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.115 4.115 10 C -0.089 4.089 11 C -0.149 4.149 12 C 0.568 3.432 13 O -0.567 6.567 14 N -0.603 5.603 15 C 0.117 3.883 16 C -0.095 4.095 17 H 0.118 0.882 18 C -0.124 4.124 19 C 0.162 3.838 20 H 0.087 0.913 21 N -0.723 5.723 22 C -0.238 4.238 23 H 0.081 0.919 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.968 3.032 27 H -0.299 1.299 28 H -0.286 1.286 29 H -0.270 1.270 30 C 0.084 3.916 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.036 0.964 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.374 0.626 47 H 0.249 0.751 48 H 0.092 0.908 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -20.092 10.060 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.290 3.710 3 O -0.471 6.471 4 N -0.304 5.304 5 C -0.050 4.050 6 C 0.066 3.934 7 C -0.145 4.145 8 C -0.103 4.103 9 C -0.132 4.132 10 C -0.108 4.108 11 C -0.153 4.153 12 C 0.358 3.642 13 O -0.448 6.448 14 N -0.334 5.334 15 C -0.005 4.005 16 C -0.115 4.115 17 H 0.136 0.864 18 C -0.182 4.182 19 C 0.051 3.949 20 H 0.105 0.895 21 N -0.362 5.362 22 C -0.369 4.369 23 H 0.099 0.901 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.797 3.203 27 H -0.226 1.226 28 H -0.212 1.212 29 H -0.195 1.195 30 C -0.041 4.041 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.185 0.815 40 H 0.162 0.838 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.207 0.793 47 H 0.057 0.943 48 H 0.110 0.890 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.811 -19.843 10.063 22.573 hybrid contribution -0.582 1.418 0.075 1.534 sum 3.228 -18.426 10.138 21.277 Atomic orbital electron populations 1.21936 0.87791 1.05817 1.06417 1.21856 0.92627 0.82258 0.74281 1.90771 1.72149 1.32998 1.51148 1.45313 1.03697 1.08106 1.73246 1.22007 0.97128 0.82832 1.03077 1.17742 0.83589 0.99674 0.92389 1.21519 0.95698 1.00733 0.96594 1.21653 0.92840 0.95734 1.00122 1.21574 1.02122 0.98518 0.91026 1.21541 0.91207 0.97364 1.00705 1.20287 0.95568 1.07157 0.92263 1.18203 0.83153 0.79458 0.83380 1.90661 1.29115 1.42927 1.82113 1.48406 1.38128 1.34807 1.12093 1.22252 0.96377 1.00914 0.80957 1.22595 0.97064 0.97321 0.94487 0.86408 1.21470 1.00792 0.99962 0.95989 1.21536 0.96368 0.85841 0.91126 0.89532 1.42600 1.14118 1.03274 1.76236 1.19590 0.97183 0.86678 1.33487 0.90144 1.25506 0.96658 1.01242 1.03191 1.69813 1.09938 1.27611 1.54641 0.85297 0.77302 0.79625 0.78073 1.22583 1.21216 1.19542 1.23161 0.90291 0.89222 1.01474 0.85339 0.89812 0.88135 0.89346 0.89612 0.91483 0.83936 0.81450 0.81454 0.83821 0.89740 0.94517 0.92079 0.90677 0.94809 0.79294 0.94275 0.88985 0.95033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 8.87 71.24 0.63 -3.14 16 2 C 0.50 17.18 7.75 87.66 0.68 17.85 16 3 O -0.59 -27.54 17.05 -3.01 -0.05 -27.59 16 4 N -0.57 -16.95 1.95 -653.88 -1.28 -18.23 16 5 C 0.09 1.85 9.23 127.77 1.18 3.03 16 6 C 0.16 4.85 4.42 38.59 0.17 5.02 16 7 C -0.13 -3.02 9.96 22.36 0.22 -2.80 16 8 C -0.09 -1.57 10.03 22.29 0.22 -1.35 16 9 C -0.11 -2.17 10.02 22.24 0.22 -1.95 16 10 C -0.09 -2.26 8.39 22.52 0.19 -2.07 16 11 C -0.15 -4.84 5.38 -19.99 -0.11 -4.95 16 12 C 0.57 21.31 7.13 86.69 0.62 21.92 16 13 O -0.57 -22.57 15.30 -4.00 -0.06 -22.63 16 14 N -0.60 -22.26 3.33 -815.57 -2.71 -24.97 16 15 C 0.12 4.08 6.33 86.86 0.55 4.63 16 16 C -0.10 -2.91 3.51 -9.40 -0.03 -2.94 16 17 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 18 C -0.12 -3.89 8.85 71.98 0.64 -3.25 16 19 C 0.16 6.08 3.37 46.18 0.16 6.24 16 20 H 0.09 3.01 8.12 -2.39 -0.02 2.99 16 21 N -0.72 -36.05 4.61 -317.32 -1.46 -37.52 16 22 C -0.24 -13.16 9.98 84.03 0.84 -12.33 16 23 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 24 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 25 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 26 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 27 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 30 C 0.08 3.09 5.74 86.73 0.50 3.59 16 31 H 0.13 1.88 8.11 -2.39 -0.02 1.86 16 32 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 33 H 0.10 2.17 7.40 -2.39 -0.02 2.15 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.58 6.44 -2.39 -0.02 1.56 16 36 H 0.07 1.53 7.64 -2.38 -0.02 1.52 16 37 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.14 3.17 6.22 -2.91 -0.02 3.15 16 41 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 42 H 0.04 1.50 7.99 -2.39 -0.02 1.48 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.03 1.30 6.38 -2.38 -0.02 1.29 16 46 H 0.37 20.51 6.10 -92.71 -0.57 19.95 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 48 H 0.09 2.68 5.64 -2.39 -0.01 2.67 16 49 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -84.32 397.82 4.29 -80.03 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.40 Total: 38.60 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 7.14 Total: 23.65 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -5.17 Total: -141.58 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.11 Total: -50.22 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -84.32 4.29 -80.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054952399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.279 kcal (2) G-P(sol) polarization free energy of solvation -84.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds