Wall clock time and date at job start Wed Apr 1 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21285 * 119.99673 * 2 1 4 4 N 1.34770 * 120.00148 * 180.02562 * 2 1 3 5 5 C 1.39921 * 119.99973 * 184.49538 * 4 2 1 6 6 C 1.38894 * 120.07101 * 325.28664 * 5 4 2 7 7 C 1.38094 * 119.92855 * 180.02562 * 6 5 4 8 8 C 1.38306 * 120.07050 * 359.97438 * 7 6 5 9 9 C 1.38258 * 120.14053 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.07255 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.03325 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46886 * 264.99378 * 11 10 9 13 13 O 1.21279 * 120.00076 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99871 * 179.97438 * 12 11 10 15 15 C 1.46508 * 120.00086 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.88412 * 31.12239 * 15 14 12 17 17 C 1.54903 * 111.00162 * 267.20015 * 15 14 12 18 18 N 1.47431 * 104.83112 * 204.91412 * 17 15 14 19 19 C 1.36930 * 125.64898 * 204.08608 * 18 17 15 20 20 H 1.08004 * 120.00069 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00582 * 0.04930 * 19 18 17 22 22 N 1.31621 * 119.99167 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47476 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46851 * 120.00459 * 23 21 19 26 26 H 1.48500 * 109.46942 * 240.00055 * 23 21 19 27 27 C 1.47025 * 108.69996 * 24.12876 * 18 17 15 28 28 C 1.54318 * 107.27032 * 358.94082 * 27 18 17 29 29 H 1.09005 * 110.71976 * 96.17084 * 28 27 18 30 30 C 1.53002 * 110.87343 * 219.36989 * 28 27 18 31 31 H 1.09005 * 109.47091 * 240.00119 * 1 2 3 32 32 H 1.09003 * 109.47006 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47193 * 120.00027 * 1 2 3 34 34 H 0.97005 * 120.00107 * 4.48674 * 4 2 1 35 35 H 1.07995 * 120.03275 * 0.05430 * 6 5 4 36 36 H 1.08000 * 119.95960 * 180.25310 * 7 6 5 37 37 H 1.07999 * 119.92305 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.96011 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47416 * 24.99435 * 11 10 9 40 40 H 1.09001 * 109.46606 * 145.00050 * 11 10 9 41 41 H 0.97003 * 120.00284 * 0.02562 * 14 12 11 42 42 H 1.08995 * 110.37287 * 323.75178 * 17 15 14 43 43 H 1.09005 * 110.36858 * 86.08057 * 17 15 14 44 44 H 0.96998 * 119.99701 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.87970 * 239.52534 * 27 18 17 46 46 H 1.08996 * 110.00582 * 118.43199 * 27 18 17 47 47 H 1.08999 * 109.47233 * 173.61323 * 30 28 27 48 48 H 1.09005 * 109.47029 * 293.61720 * 30 28 27 49 49 H 1.09001 * 109.46587 * 53.60911 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5769 -1.1690 0.0945 6 6 4.3163 -0.1555 -0.5015 7 6 5.6940 -0.1605 -0.4064 8 6 6.3374 -1.1730 0.2819 9 6 5.6042 -2.1833 0.8762 10 6 4.2260 -2.1846 0.7838 11 6 3.4276 -3.2866 1.4315 12 6 3.1373 -4.3606 0.4150 13 8 3.5394 -4.2430 -0.7231 14 7 2.4316 -5.4522 0.7710 15 6 2.1497 -6.4966 -0.2170 16 1 2.9517 -6.5626 -0.9523 17 6 0.7830 -6.2557 -0.9051 18 7 0.3504 -7.5889 -1.3622 19 6 -0.5207 -7.8366 -2.3893 20 1 -0.7755 -8.8538 -2.6479 21 6 -1.0759 -6.7804 -3.0986 22 7 -0.7646 -5.5408 -2.7842 23 14 -2.2648 -7.1183 -4.4992 24 1 -2.4482 -8.5841 -4.6501 25 1 -3.5740 -6.4841 -4.2010 26 1 -1.7176 -6.5551 -5.7596 27 6 1.0085 -8.6084 -0.5320 28 6 1.9140 -7.8660 0.4731 29 1 1.4039 -7.7342 1.4274 30 6 3.2371 -8.6094 0.6671 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0277 0.0005 33 1 -0.3633 -0.5138 -0.8899 34 1 1.6981 -2.0059 -0.0666 35 1 3.8144 0.6358 -1.0383 36 1 6.2692 0.6295 -0.8661 37 1 7.4150 -1.1748 0.3544 38 1 6.1097 -2.9727 1.4126 39 1 3.9986 -3.7121 2.2567 40 1 2.4892 -2.8811 1.8098 41 1 2.1102 -5.5464 1.6814 42 1 0.0661 -5.8480 -0.1924 43 1 0.8993 -5.5827 -1.7546 44 1 -1.1523 -4.8027 -3.2800 45 1 1.6113 -9.2647 -1.1595 46 1 0.2604 -9.1925 0.0040 47 1 3.9021 -8.0111 1.2899 48 1 3.0482 -9.5669 1.1526 49 1 3.7036 -8.7799 -0.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080639633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:24 Heat of formation + Delta-G solvation = -21.544904 kcal Electronic energy + Delta-G solvation = -30832.064083 eV Core-core repulsion = 26759.594524 eV Total energy + Delta-G solvation = -4072.469559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76921 -39.52878 -38.44488 -37.44787 -34.81625 -33.94577 -32.86662 -32.49193 -30.89852 -30.40799 -28.98005 -28.21908 -26.84744 -25.64781 -23.66936 -23.08596 -21.85909 -20.50462 -20.42302 -20.13315 -19.48767 -17.81191 -16.99527 -16.97976 -16.77946 -16.14634 -15.71839 -15.52336 -15.10192 -14.88307 -14.36571 -14.20434 -13.95034 -13.75407 -13.56931 -13.23309 -12.99953 -12.95200 -12.78162 -12.60200 -12.57096 -12.40850 -12.21558 -12.04365 -11.75223 -11.49239 -11.32295 -11.24523 -11.12891 -10.84163 -10.67496 -10.38907 -10.36279 -10.01315 -9.86354 -9.83436 -9.81386 -9.56839 -8.71280 -8.69810 -8.49643 -8.08365 -6.88396 -5.69090 -3.11645 1.27537 1.44785 2.53631 2.89527 3.06196 3.37192 3.41776 3.44179 3.45633 3.91230 4.45904 4.58473 4.67155 4.79938 5.00050 5.09746 5.14495 5.16097 5.17283 5.26675 5.29475 5.31517 5.40108 5.43507 5.49105 5.63876 5.66070 5.70954 5.77769 5.92126 5.99399 6.04106 6.11388 6.20506 6.29858 6.33805 6.40576 6.43422 6.51593 6.58655 6.62567 6.75385 6.90781 7.06490 7.33628 7.39185 7.58358 7.77964 7.87886 8.02858 8.31933 8.54593 9.17088 9.78245 10.41247 11.34181 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003472 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.947985 B = 8061.437963 C = 9997.048802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.533 6.533 4 N -0.671 5.671 5 C 0.163 3.837 6 C -0.121 4.121 7 C -0.105 4.105 8 C -0.136 4.136 9 C -0.091 4.091 10 C -0.088 4.088 11 C -0.104 4.104 12 C 0.505 3.495 13 O -0.523 6.523 14 N -0.714 5.714 15 C 0.119 3.881 16 H 0.092 0.908 17 C 0.149 3.851 18 N -0.603 5.603 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.141 3.859 28 C -0.111 4.111 29 H 0.073 0.927 30 C -0.137 4.137 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.415 0.585 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.394 0.606 42 H 0.012 0.988 43 H 0.111 0.889 44 H 0.251 0.749 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 6.355 12.712 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.410 6.410 4 N -0.316 5.316 5 C 0.068 3.932 6 C -0.141 4.141 7 C -0.124 4.124 8 C -0.155 4.155 9 C -0.110 4.110 10 C -0.091 4.091 11 C -0.144 4.144 12 C 0.290 3.710 13 O -0.398 6.398 14 N -0.365 5.365 15 C 0.013 3.987 16 H 0.110 0.890 17 C 0.023 3.977 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.014 3.986 28 C -0.131 4.131 29 H 0.091 0.909 30 C -0.195 4.195 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.252 0.748 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.227 0.773 42 H 0.030 0.970 43 H 0.129 0.871 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.041 0.959 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.499 7.301 11.713 16.755 hybrid contribution -1.143 -0.788 -0.227 1.407 sum 8.356 6.512 11.487 15.626 Atomic orbital electron populations 1.21954 0.90542 1.05799 1.05242 1.21039 0.91015 0.82961 0.74752 1.90693 1.70631 1.31328 1.48331 1.43672 1.05357 1.10303 1.72265 1.17518 0.82484 0.96379 0.96771 1.21235 0.93810 0.99358 0.99692 1.21016 0.93953 0.98502 0.98892 1.21035 0.99685 0.95187 0.99572 1.20751 0.92303 0.98245 0.99658 1.19061 0.94006 0.95961 1.00043 1.20641 1.01669 0.93857 0.98254 1.20432 0.78558 0.82784 0.89215 1.90778 1.51033 1.77621 1.20385 1.45904 1.55615 1.20966 1.14007 1.22711 1.01141 0.84709 0.90092 0.88987 1.22220 0.87857 0.89128 0.98477 1.44390 1.51743 1.00633 1.36136 1.19123 1.16984 0.92923 1.06223 0.90305 1.24789 1.00601 0.95228 0.99877 1.69802 1.47004 0.97495 1.42445 0.86005 0.80301 0.77387 0.81848 1.20498 1.21763 1.21683 1.21335 0.93416 0.92348 0.91453 1.22425 0.96245 0.95571 0.98862 0.90889 1.21735 0.96527 0.99541 1.01652 0.88967 0.88650 0.88467 0.74781 0.84442 0.85958 0.86121 0.85928 0.87822 0.88498 0.77268 0.97002 0.87127 0.93818 0.95503 0.95887 0.93125 0.92909 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 10.32 36.01 0.37 -1.29 16 2 C 0.51 6.77 7.78 -10.99 -0.09 6.68 16 3 O -0.53 -8.63 14.50 5.55 0.08 -8.55 16 4 N -0.67 -8.97 4.78 -9.86 -0.05 -9.01 16 5 C 0.16 2.37 6.29 -83.69 -0.53 1.85 16 6 C -0.12 -1.78 8.70 -39.39 -0.34 -2.12 16 7 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 16 8 C -0.14 -1.58 10.04 -39.55 -0.40 -1.98 16 9 C -0.09 -1.09 9.68 -39.61 -0.38 -1.48 16 10 C -0.09 -1.15 4.39 -104.43 -0.46 -1.61 16 11 C -0.10 -1.13 5.24 -29.03 -0.15 -1.28 16 12 C 0.51 7.50 7.52 -10.99 -0.08 7.42 16 13 O -0.52 -10.35 15.67 5.56 0.09 -10.27 16 14 N -0.71 -10.03 5.20 -51.73 -0.27 -10.30 16 15 C 0.12 2.15 2.87 -65.78 -0.19 1.96 16 16 H 0.09 1.91 7.45 -51.93 -0.39 1.52 16 17 C 0.15 3.48 5.58 -2.53 -0.01 3.47 16 18 N -0.60 -15.02 3.39 -170.08 -0.58 -15.59 16 19 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.14 2.80 6.84 -3.07 -0.02 2.78 16 28 C -0.11 -1.76 3.19 -88.79 -0.28 -2.04 16 29 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 30 C -0.14 -1.79 9.17 37.16 0.34 -1.45 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.42 5.36 7.68 -40.82 -0.31 5.04 16 35 H 0.14 2.13 6.20 -52.49 -0.33 1.81 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.10 0.89 7.43 -51.93 -0.39 0.50 16 41 H 0.39 4.20 8.57 -40.82 -0.35 3.85 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.11 3.06 5.87 -51.93 -0.30 2.76 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.54 7.78 -51.93 -0.40 0.13 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.79 8.07 -51.93 -0.42 0.38 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -34.81 400.31 -9.52 -44.33 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.50 Total: 9.72 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.87 Total: 2.54 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.33 Total: -60.63 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.17 Total: -18.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.81 -9.52 -44.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080639633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.787 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds