Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21285 * 119.99673 * 2 1 4 4 N 1.34770 * 120.00148 * 180.02562 * 2 1 3 5 5 C 1.39921 * 119.99973 * 184.49538 * 4 2 1 6 6 C 1.38894 * 120.07101 * 325.28664 * 5 4 2 7 7 C 1.38094 * 119.92855 * 180.02562 * 6 5 4 8 8 C 1.38306 * 120.07050 * 359.97438 * 7 6 5 9 9 C 1.38258 * 120.14053 * 0.02562 * 8 7 6 10 10 C 1.38132 * 120.07255 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.03325 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46886 * 264.99378 * 11 10 9 13 13 O 1.21279 * 120.00076 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99871 * 179.97438 * 12 11 10 15 15 C 1.46508 * 120.00086 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.88412 * 31.12239 * 15 14 12 17 17 C 1.54903 * 111.00162 * 267.20015 * 15 14 12 18 18 N 1.47431 * 104.83112 * 204.91412 * 17 15 14 19 19 C 1.36930 * 125.64898 * 204.08608 * 18 17 15 20 20 H 1.08004 * 120.00069 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00582 * 0.04930 * 19 18 17 22 22 N 1.31621 * 119.99167 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00323 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47476 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46851 * 120.00459 * 23 21 19 26 26 H 1.48500 * 109.46942 * 240.00055 * 23 21 19 27 27 C 1.47025 * 108.69996 * 24.12876 * 18 17 15 28 28 C 1.54318 * 107.27032 * 358.94082 * 27 18 17 29 29 H 1.09005 * 110.71976 * 96.17084 * 28 27 18 30 30 C 1.53002 * 110.87343 * 219.36989 * 28 27 18 31 31 H 1.09005 * 109.47091 * 240.00119 * 1 2 3 32 32 H 1.09003 * 109.47006 * 359.97438 * 1 2 3 33 33 H 1.08995 * 109.47193 * 120.00027 * 1 2 3 34 34 H 0.97005 * 120.00107 * 4.48674 * 4 2 1 35 35 H 1.07995 * 120.03275 * 0.05430 * 6 5 4 36 36 H 1.08000 * 119.95960 * 180.25310 * 7 6 5 37 37 H 1.07999 * 119.92305 * 179.97438 * 8 7 6 38 38 H 1.08002 * 119.96011 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47416 * 24.99435 * 11 10 9 40 40 H 1.09001 * 109.46606 * 145.00050 * 11 10 9 41 41 H 0.97003 * 120.00284 * 0.02562 * 14 12 11 42 42 H 1.08995 * 110.37287 * 323.75178 * 17 15 14 43 43 H 1.09005 * 110.36858 * 86.08057 * 17 15 14 44 44 H 0.96998 * 119.99701 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.87970 * 239.52534 * 27 18 17 46 46 H 1.08996 * 110.00582 * 118.43199 * 27 18 17 47 47 H 1.08999 * 109.47233 * 173.61323 * 30 28 27 48 48 H 1.09005 * 109.47029 * 293.61720 * 30 28 27 49 49 H 1.09001 * 109.46587 * 53.60911 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5769 -1.1690 0.0945 6 6 4.3163 -0.1555 -0.5015 7 6 5.6940 -0.1605 -0.4064 8 6 6.3374 -1.1730 0.2819 9 6 5.6042 -2.1833 0.8762 10 6 4.2260 -2.1846 0.7838 11 6 3.4276 -3.2866 1.4315 12 6 3.1373 -4.3606 0.4150 13 8 3.5394 -4.2430 -0.7231 14 7 2.4316 -5.4522 0.7710 15 6 2.1497 -6.4966 -0.2170 16 1 2.9517 -6.5626 -0.9523 17 6 0.7830 -6.2557 -0.9051 18 7 0.3504 -7.5889 -1.3622 19 6 -0.5207 -7.8366 -2.3893 20 1 -0.7755 -8.8538 -2.6479 21 6 -1.0759 -6.7804 -3.0986 22 7 -0.7646 -5.5408 -2.7842 23 14 -2.2648 -7.1183 -4.4992 24 1 -2.4482 -8.5841 -4.6501 25 1 -3.5740 -6.4841 -4.2010 26 1 -1.7176 -6.5551 -5.7596 27 6 1.0085 -8.6084 -0.5320 28 6 1.9140 -7.8660 0.4731 29 1 1.4039 -7.7342 1.4274 30 6 3.2371 -8.6094 0.6671 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3633 1.0277 0.0005 33 1 -0.3633 -0.5138 -0.8899 34 1 1.6981 -2.0059 -0.0666 35 1 3.8144 0.6358 -1.0383 36 1 6.2692 0.6295 -0.8661 37 1 7.4150 -1.1748 0.3544 38 1 6.1097 -2.9727 1.4126 39 1 3.9986 -3.7121 2.2567 40 1 2.4892 -2.8811 1.8098 41 1 2.1102 -5.5464 1.6814 42 1 0.0661 -5.8480 -0.1924 43 1 0.8993 -5.5827 -1.7546 44 1 -1.1523 -4.8027 -3.2800 45 1 1.6113 -9.2647 -1.1595 46 1 0.2604 -9.1925 0.0040 47 1 3.9021 -8.0111 1.2899 48 1 3.0482 -9.5669 1.1526 49 1 3.7036 -8.7799 -0.3032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080639633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = -45.139283 kcal Electronic energy + Delta-G solvation = -30833.087212 eV Core-core repulsion = 26759.594524 eV Total energy + Delta-G solvation = -4073.492688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.81017 -40.79558 -39.58694 -38.86467 -35.86524 -35.58251 -34.30532 -33.62123 -32.13138 -31.81671 -30.09892 -29.44956 -28.12942 -27.25728 -25.25622 -24.07543 -23.04939 -21.99351 -21.53351 -21.44983 -20.81501 -18.90781 -18.81700 -18.03110 -17.93429 -17.42794 -16.92338 -16.69466 -16.63016 -16.08581 -15.61308 -15.41731 -15.33565 -15.14678 -14.57607 -14.48681 -14.36620 -14.20248 -14.02350 -13.92098 -13.63745 -13.42933 -13.35162 -13.15954 -13.07999 -12.95209 -12.85803 -12.59982 -12.38827 -12.23809 -12.13969 -11.98729 -11.82906 -11.62003 -11.40203 -11.37485 -10.93180 -10.86562 -10.76020 -9.90928 -9.70250 -9.09428 -8.87419 -7.76934 -5.21940 0.29165 0.45509 1.45103 1.46675 1.52122 1.56332 1.72852 2.08113 2.24430 2.49988 2.90758 3.32905 3.63559 3.71303 3.73919 3.76087 3.92121 4.06925 4.11599 4.14255 4.21101 4.32750 4.39448 4.48170 4.53961 4.56742 4.59370 4.65816 4.68918 4.70784 4.74637 4.91332 4.99674 5.05995 5.09951 5.12026 5.25505 5.32659 5.35708 5.43747 5.47144 5.52661 5.55718 5.61776 5.70966 5.84207 6.10564 6.30573 6.31769 6.70525 7.00505 7.10014 7.41317 7.78447 8.40387 9.23447 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003472 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.947985 B = 8061.437963 C = 9997.048802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.569 6.569 4 N -0.668 5.668 5 C 0.137 3.863 6 C -0.150 4.150 7 C -0.112 4.112 8 C -0.137 4.137 9 C -0.095 4.095 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.507 3.493 13 O -0.577 6.577 14 N -0.699 5.699 15 C 0.138 3.862 16 H 0.063 0.937 17 C 0.157 3.843 18 N -0.627 5.627 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.065 4.065 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.297 1.297 27 C 0.132 3.868 28 C -0.093 4.093 29 H 0.100 0.900 30 C -0.130 4.130 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.116 0.884 41 H 0.416 0.584 42 H -0.002 1.002 43 H 0.061 0.939 44 H 0.245 0.755 45 H 0.025 0.975 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 4.804 15.386 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.448 6.448 4 N -0.313 5.313 5 C 0.042 3.958 6 C -0.170 4.170 7 C -0.131 4.131 8 C -0.155 4.155 9 C -0.113 4.113 10 C -0.103 4.103 11 C -0.131 4.131 12 C 0.294 3.706 13 O -0.456 6.456 14 N -0.351 5.351 15 C 0.031 3.969 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.353 5.353 19 C -0.368 4.368 20 H 0.100 0.900 21 C -0.257 4.257 22 N -0.593 5.593 23 Si 0.804 3.196 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.224 1.224 27 C 0.006 3.994 28 C -0.112 4.112 29 H 0.118 0.882 30 C -0.187 4.187 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.253 0.747 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.253 0.747 42 H 0.016 0.984 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.050 0.950 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.397 5.705 14.452 18.695 hybrid contribution -1.379 -0.325 -1.086 1.785 sum 9.018 5.380 13.366 16.997 Atomic orbital electron populations 1.21982 0.87650 1.06744 1.06381 1.21717 0.92387 0.82353 0.73741 1.90671 1.71646 1.32430 1.50082 1.43713 1.05270 1.10347 1.71995 1.17848 0.83009 0.97215 0.97685 1.21282 0.95077 0.99650 1.00985 1.21311 0.93263 0.99524 0.98963 1.21432 1.01295 0.94364 0.98420 1.21207 0.92034 0.98829 0.99235 1.19364 0.94904 0.95999 1.00068 1.20663 1.03054 0.91776 0.97621 1.21139 0.77257 0.83049 0.89136 1.90770 1.53182 1.78645 1.23016 1.45672 1.55248 1.19959 1.14213 1.22108 0.96860 0.87312 0.90651 0.91888 1.21908 0.90420 0.87917 0.96728 1.44688 1.51740 1.02448 1.36453 1.19487 1.17237 0.93094 1.07000 0.90044 1.25593 1.02585 0.95202 1.02356 1.70082 1.47912 0.98031 1.43315 0.85044 0.78101 0.77830 0.78589 1.19001 1.21638 1.22390 1.21594 0.93984 0.91916 0.91864 1.22364 0.97243 0.93277 0.98364 0.88156 1.21689 0.94783 1.00646 1.01587 0.86552 0.87853 0.88349 0.74746 0.86484 0.84161 0.83080 0.83033 0.83645 0.86554 0.74679 0.98412 0.92050 0.94567 0.95680 0.95032 0.90966 0.90584 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.32 71.24 0.74 -2.43 16 2 C 0.51 13.88 7.78 87.66 0.68 14.57 16 3 O -0.57 -19.41 14.50 -3.05 -0.04 -19.45 16 4 N -0.67 -18.44 4.78 -303.51 -1.45 -19.89 16 5 C 0.14 4.06 6.29 38.15 0.24 4.30 16 6 C -0.15 -4.62 8.70 22.39 0.19 -4.42 16 7 C -0.11 -2.80 10.04 22.25 0.22 -2.58 16 8 C -0.14 -2.91 10.04 22.29 0.22 -2.69 16 9 C -0.09 -2.05 9.68 22.25 0.22 -1.84 16 10 C -0.10 -2.50 4.39 -19.74 -0.09 -2.59 16 11 C -0.09 -1.74 5.24 29.10 0.15 -1.59 16 12 C 0.51 14.37 7.52 87.66 0.66 15.03 16 13 O -0.58 -23.17 15.67 -3.03 -0.05 -23.21 16 14 N -0.70 -18.21 5.20 -435.97 -2.27 -20.48 16 15 C 0.14 4.90 2.87 46.38 0.13 5.03 16 16 H 0.06 2.66 7.45 -2.39 -0.02 2.64 16 17 C 0.16 7.50 5.58 86.85 0.48 7.99 16 18 N -0.63 -31.67 3.39 -692.00 -2.35 -34.02 16 19 C -0.24 -13.33 10.27 84.04 0.86 -12.47 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 21 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 22 N -0.94 -56.11 10.09 21.65 0.22 -55.89 16 23 Si 0.98 45.76 29.55 68.60 2.03 47.78 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 C 0.13 5.09 6.84 86.73 0.59 5.69 16 28 C -0.09 -2.70 3.19 -9.61 -0.03 -2.73 16 29 H 0.10 2.41 8.00 -2.38 -0.02 2.39 16 30 C -0.13 -2.91 9.17 71.98 0.66 -2.25 16 31 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.42 11.03 7.68 -92.70 -0.71 10.32 16 35 H 0.12 3.98 6.20 -2.91 -0.02 3.96 16 36 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.15 1.59 8.05 -2.39 -0.02 1.57 16 40 H 0.12 1.80 7.43 -2.39 -0.02 1.78 16 41 H 0.42 7.31 8.57 -92.71 -0.79 6.51 16 42 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.06 3.58 5.87 -2.38 -0.01 3.57 16 44 H 0.24 14.18 8.31 -92.71 -0.77 13.40 16 45 H 0.03 0.98 7.78 -2.39 -0.02 0.96 16 46 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 49 H 0.04 1.08 8.07 -2.39 -0.02 1.06 16 Total: -1.00 -81.73 400.31 1.97 -79.77 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.53 Total: 31.59 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.41 Total: 13.81 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -5.85 Total: -130.28 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.09 Total: -42.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -81.73 1.97 -79.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080639633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.626 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds