Wall clock time and date at job start Wed Apr 1 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47174 * 270.00277 * 10 8 6 12 12 H 1.48501 * 109.47062 * 30.00228 * 10 8 6 13 13 H 1.48499 * 109.46981 * 150.00382 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.08999 * 110.99936 * 81.10677 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21512 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.48162 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.39961 * 120.89387 * 359.97438 * 20 18 17 22 22 C 1.37979 * 119.13875 * 180.02562 * 21 20 18 23 23 N 1.31910 * 120.97130 * 0.02562 * 22 21 20 24 24 C 1.32176 * 121.97391 * 359.97438 * 23 22 21 25 25 O 1.35687 * 119.62066 * 179.97438 * 24 23 22 26 26 C 1.42898 * 117.00413 * 359.97438 * 25 24 23 27 27 C 1.53773 * 113.61669 * 247.50017 * 26 25 24 28 28 C 1.53781 * 87.08086 * 220.01821 * 27 26 25 29 29 C 1.53773 * 87.08136 * 25.43189 * 28 27 26 30 30 C 1.38889 * 120.75031 * 359.72017 * 24 23 22 31 31 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 32 32 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 33 33 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 34 34 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 35 35 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 36 36 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 38 38 H 1.08998 * 110.36896 * 265.40859 * 14 5 4 39 39 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 40 40 H 1.08006 * 120.43475 * 0.02889 * 21 20 18 41 41 H 1.07997 * 119.51529 * 180.02562 * 22 21 20 42 42 H 1.09001 * 112.84514 * 18.80833 * 26 25 24 43 43 H 1.09000 * 113.61807 * 334.56596 * 27 26 25 44 44 H 1.09004 * 113.61698 * 105.47240 * 27 26 25 45 45 H 1.08999 * 113.61541 * 270.88322 * 28 27 26 46 46 H 1.09008 * 113.61116 * 139.98030 * 28 27 26 47 47 H 1.09001 * 113.61644 * 220.01984 * 29 28 27 48 48 H 1.09005 * 113.69066 * 89.12619 * 29 28 27 49 49 H 1.08005 * 120.52727 * 180.30786 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 5.5791 -5.5763 -1.8904 12 1 6.1254 -3.7424 -3.3799 13 1 7.5311 -4.2038 -1.4584 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4472 -1.6529 1.4390 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2815 -1.6766 3.7549 20 6 2.4510 0.4065 4.8057 21 6 2.4881 1.7991 4.6706 22 6 2.6197 2.5804 5.8002 23 7 2.7108 2.0334 6.9971 24 6 2.6804 0.7236 7.1722 25 8 2.7784 0.2121 8.4251 26 6 2.9119 1.1458 9.4986 27 6 4.2828 1.0940 10.1933 28 6 3.5289 1.2764 11.5211 29 6 2.3093 0.6510 10.8240 30 6 2.5439 -0.1347 6.0888 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3847 -0.0961 -1.9951 35 1 1.3215 -1.4701 -1.5824 36 1 6.1463 -3.3199 0.7355 37 1 3.7993 -2.1364 1.2216 38 1 4.1944 -0.4423 0.8029 39 1 2.2418 1.0362 2.2799 40 1 2.4146 2.2563 3.6948 41 1 2.6486 3.6556 5.7031 42 1 2.5973 2.1529 9.2250 43 1 4.7817 0.1290 10.1034 44 1 4.9321 1.9324 9.9411 45 1 3.3842 2.3198 11.8013 46 1 3.9254 0.6695 12.3352 47 1 1.3654 1.1317 11.0809 48 1 2.2673 -0.4352 10.9059 49 1 2.5145 -1.2042 6.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080689166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:24 Heat of formation + Delta-G solvation = 16.718470 kcal Electronic energy + Delta-G solvation = -29756.416414 eV Core-core repulsion = 25685.606080 eV Total energy + Delta-G solvation = -4070.810334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02065 -39.78710 -38.89117 -37.50587 -36.57419 -34.06178 -32.96722 -32.39401 -30.58012 -30.37242 -27.91725 -26.04232 -25.97925 -25.64360 -24.49992 -23.45747 -23.26830 -21.02287 -20.15734 -19.97003 -19.76925 -18.61591 -17.48037 -16.99005 -16.47323 -16.03046 -15.77710 -15.63894 -15.35549 -15.14041 -14.80804 -14.46411 -14.42630 -13.92822 -13.70776 -13.31674 -13.03808 -12.95475 -12.81399 -12.70386 -12.53947 -12.28082 -12.09876 -11.82088 -11.73847 -11.61821 -11.25026 -11.10318 -10.82055 -10.78863 -10.67120 -10.58982 -10.41446 -10.11175 -10.01462 -9.99603 -9.78551 -9.74189 -9.57812 -8.68717 -8.64631 -8.54024 -6.83749 -5.62357 -3.06451 0.62899 0.97278 2.74145 3.00757 3.35971 3.42386 3.46643 3.49113 3.76187 4.04516 4.20823 4.22184 4.49090 4.49318 4.55746 4.56927 4.79618 4.85014 4.94156 5.08924 5.22920 5.27594 5.32645 5.39755 5.39980 5.49800 5.52744 5.54103 5.59159 5.61507 5.72229 5.74169 5.87195 5.91707 5.95728 6.00866 6.12002 6.18790 6.23633 6.34845 6.44419 6.64291 6.72241 6.90926 7.08930 7.42673 7.59672 7.62101 7.75648 7.91215 8.37259 8.44472 9.22100 9.83513 10.46171 11.40439 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002278 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.181538 B =12286.173615 C =13623.581789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.079 0.921 8 C -0.010 4.010 9 N -0.917 5.917 10 Si 0.915 3.085 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.290 1.290 14 C 0.148 3.852 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.703 5.703 18 C 0.553 3.447 19 O -0.516 6.516 20 C -0.041 4.041 21 C -0.184 4.184 22 C 0.137 3.863 23 N -0.533 5.533 24 C 0.320 3.680 25 O -0.291 6.291 26 C 0.061 3.939 27 C -0.153 4.153 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.135 4.135 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.028 0.972 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.014 0.986 39 H 0.394 0.606 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 14.381 17.126 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.097 0.903 8 C -0.206 4.206 9 N -0.565 5.565 10 Si 0.746 3.254 11 H -0.215 1.215 12 H -0.207 1.207 13 H -0.217 1.217 14 C 0.022 3.978 15 C 0.015 3.985 16 H 0.110 0.890 17 N -0.353 5.353 18 C 0.338 3.662 19 O -0.392 6.392 20 C -0.052 4.052 21 C -0.205 4.205 22 C -0.019 4.019 23 N -0.257 5.257 24 C 0.141 3.859 25 O -0.198 6.198 26 C 0.004 3.996 27 C -0.190 4.190 28 C -0.176 4.176 29 C -0.175 4.175 30 C -0.156 4.156 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.032 0.968 39 H 0.229 0.771 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.110 13.590 18.032 23.992 hybrid contribution 0.625 -0.266 -1.323 1.487 sum -7.485 13.325 16.709 22.644 Atomic orbital electron populations 1.21748 0.94854 1.02004 1.00939 1.22428 0.95263 0.99189 0.96169 0.90797 1.21338 0.90324 0.93207 0.93621 1.44388 1.30980 1.50458 1.07074 1.19053 1.06155 1.17406 0.92936 0.90309 1.24832 0.98775 1.00554 0.96413 1.69798 1.29971 1.45949 1.10777 0.86069 0.79573 0.80802 0.79005 1.21510 1.20738 1.21667 1.22241 0.89112 1.01301 0.85120 1.22768 1.01353 0.92258 0.82163 0.88963 1.45766 1.73477 1.10130 1.05950 1.17991 0.77763 0.87653 0.82814 1.90831 1.48504 1.14053 1.85766 1.20286 0.97455 0.93730 0.93748 1.22160 1.04293 0.93089 1.00928 1.22315 0.93408 1.00234 0.85909 1.67055 1.18645 1.12054 1.27930 1.19638 0.92221 0.88111 0.85892 1.86373 1.86196 1.35351 1.11866 1.24184 0.97393 0.94540 0.83471 1.23453 0.96774 1.03294 0.95508 1.22627 0.96743 1.01481 0.96797 1.23275 0.98450 1.02309 0.93446 1.21173 1.03102 1.02046 0.89291 0.93074 0.92781 0.92392 0.95805 0.95411 0.93621 0.86883 0.96849 0.77087 0.84065 0.81833 0.86539 0.89103 0.90792 0.89717 0.90413 0.90645 0.88929 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.17 37.16 0.34 -1.46 16 2 C -0.11 -1.80 3.15 -88.78 -0.28 -2.08 16 3 H 0.07 1.07 8.00 -51.93 -0.42 0.66 16 4 C 0.14 2.87 6.85 -3.06 -0.02 2.85 16 5 N -0.60 -15.48 3.39 -170.07 -0.58 -16.05 16 6 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.56 10.09 55.49 0.56 -27.00 16 10 Si 0.92 22.45 29.55 -169.99 -5.02 17.42 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.15 3.66 5.58 -2.53 -0.01 3.65 16 15 C 0.12 2.27 2.76 -65.79 -0.18 2.09 16 16 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 17 N -0.70 -10.95 5.19 -52.58 -0.27 -11.22 16 18 C 0.55 9.48 7.80 -12.18 -0.09 9.38 16 19 O -0.52 -11.12 16.19 5.36 0.09 -11.03 16 20 C -0.04 -0.57 5.91 -104.68 -0.62 -1.19 16 21 C -0.18 -1.91 9.61 -39.03 -0.38 -2.28 16 22 C 0.14 1.32 11.17 -17.61 -0.20 1.12 16 23 N -0.53 -6.25 8.56 -13.38 -0.11 -6.37 16 24 C 0.32 4.20 7.49 -17.16 -0.13 4.07 16 25 O -0.29 -3.64 10.12 -18.76 -0.19 -3.83 16 26 C 0.06 0.58 4.18 -25.92 -0.11 0.48 16 27 C -0.15 -1.27 7.91 -25.92 -0.21 -1.47 16 28 C -0.14 -0.88 8.08 -25.92 -0.21 -1.09 16 29 C -0.14 -1.03 7.91 -25.92 -0.21 -1.24 16 30 C -0.13 -1.91 9.61 -38.84 -0.37 -2.28 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.80 8.08 -51.93 -0.42 0.39 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.56 7.78 -51.93 -0.40 0.15 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.11 3.31 5.87 -51.93 -0.31 3.00 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.39 4.70 6.65 -40.82 -0.27 4.43 16 40 H 0.14 1.07 6.53 -52.48 -0.34 0.73 16 41 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.13 6.87 -51.93 -0.36 0.77 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.15 2.28 7.74 -52.48 -0.41 1.88 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -34.03 398.14 -9.97 -44.00 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.51 Total: 4.48 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.92 Total: 3.61 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.40 Total: -60.64 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.10 Total: -14.86 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.03 -9.97 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080689166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.719 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds