Wall clock time and date at job start Wed Apr 1 2020 03:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47174 * 270.00277 * 10 8 6 12 12 H 1.48501 * 109.47062 * 30.00228 * 10 8 6 13 13 H 1.48499 * 109.46981 * 150.00382 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.08999 * 110.99936 * 81.10677 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21512 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.48162 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.39961 * 120.89387 * 359.97438 * 20 18 17 22 22 C 1.37979 * 119.13875 * 180.02562 * 21 20 18 23 23 N 1.31910 * 120.97130 * 0.02562 * 22 21 20 24 24 C 1.32176 * 121.97391 * 359.97438 * 23 22 21 25 25 O 1.35687 * 119.62066 * 179.97438 * 24 23 22 26 26 C 1.42898 * 117.00413 * 359.97438 * 25 24 23 27 27 C 1.53773 * 113.61669 * 247.50017 * 26 25 24 28 28 C 1.53781 * 87.08086 * 220.01821 * 27 26 25 29 29 C 1.53773 * 87.08136 * 25.43189 * 28 27 26 30 30 C 1.38889 * 120.75031 * 359.72017 * 24 23 22 31 31 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 32 32 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 33 33 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 34 34 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 35 35 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 36 36 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 38 38 H 1.08998 * 110.36896 * 265.40859 * 14 5 4 39 39 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 40 40 H 1.08006 * 120.43475 * 0.02889 * 21 20 18 41 41 H 1.07997 * 119.51529 * 180.02562 * 22 21 20 42 42 H 1.09001 * 112.84514 * 18.80833 * 26 25 24 43 43 H 1.09000 * 113.61807 * 334.56596 * 27 26 25 44 44 H 1.09004 * 113.61698 * 105.47240 * 27 26 25 45 45 H 1.08999 * 113.61541 * 270.88322 * 28 27 26 46 46 H 1.09008 * 113.61116 * 139.98030 * 28 27 26 47 47 H 1.09001 * 113.61644 * 220.01984 * 29 28 27 48 48 H 1.09005 * 113.69066 * 89.12619 * 29 28 27 49 49 H 1.08005 * 120.52727 * 180.30786 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 5.5791 -5.5763 -1.8904 12 1 6.1254 -3.7424 -3.3799 13 1 7.5311 -4.2038 -1.4584 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4472 -1.6529 1.4390 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2815 -1.6766 3.7549 20 6 2.4510 0.4065 4.8057 21 6 2.4881 1.7991 4.6706 22 6 2.6197 2.5804 5.8002 23 7 2.7108 2.0334 6.9971 24 6 2.6804 0.7236 7.1722 25 8 2.7784 0.2121 8.4251 26 6 2.9119 1.1458 9.4986 27 6 4.2828 1.0940 10.1933 28 6 3.5289 1.2764 11.5211 29 6 2.3093 0.6510 10.8240 30 6 2.5439 -0.1347 6.0888 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3847 -0.0961 -1.9951 35 1 1.3215 -1.4701 -1.5824 36 1 6.1463 -3.3199 0.7355 37 1 3.7993 -2.1364 1.2216 38 1 4.1944 -0.4423 0.8029 39 1 2.2418 1.0362 2.2799 40 1 2.4146 2.2563 3.6948 41 1 2.6486 3.6556 5.7031 42 1 2.5973 2.1529 9.2250 43 1 4.7817 0.1290 10.1034 44 1 4.9321 1.9324 9.9411 45 1 3.3842 2.3198 11.8013 46 1 3.9254 0.6695 12.3352 47 1 1.3654 1.1317 11.0809 48 1 2.2673 -0.4352 10.9059 49 1 2.5145 -1.2042 6.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080689166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:22 Heat of formation + Delta-G solvation = -6.971496 kcal Electronic energy + Delta-G solvation = -29757.443688 eV Core-core repulsion = 25685.606080 eV Total energy + Delta-G solvation = -4071.837608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.00100 -40.98786 -39.89531 -39.05213 -37.39401 -35.76153 -34.51644 -33.58470 -32.16879 -31.50489 -29.59565 -27.46967 -26.78674 -26.65068 -25.74551 -24.68945 -24.37179 -22.48510 -21.69968 -21.28052 -20.57435 -19.75566 -18.94009 -18.46558 -17.70064 -17.21149 -16.86430 -16.74723 -16.69913 -16.14688 -15.97930 -15.79889 -15.58419 -15.51380 -14.96798 -14.48063 -14.41442 -14.31334 -14.12614 -13.89179 -13.47273 -13.44700 -13.39321 -13.06726 -12.98784 -12.83807 -12.61515 -12.47618 -12.24742 -12.21542 -12.06146 -11.84307 -11.68334 -11.51153 -11.40620 -11.29110 -11.25838 -11.07037 -10.78091 -10.69239 -10.09218 -9.57629 -8.91207 -7.78363 -5.25034 -0.42731 0.07057 1.43491 1.46564 1.55098 1.71461 1.80401 2.17536 2.48371 2.74001 3.21690 3.31298 3.42873 3.57710 3.59258 3.64019 3.78141 3.87454 3.88041 3.89651 3.98064 4.03225 4.08720 4.09547 4.48156 4.52766 4.61990 4.62660 4.65888 4.70189 4.75935 4.77931 4.90498 4.96648 4.98393 5.01710 5.04401 5.09988 5.10499 5.16777 5.22474 5.27130 5.44931 5.45770 5.50129 5.60291 5.79531 6.23119 6.27134 6.46886 6.70120 7.05133 7.13598 7.75898 8.37791 9.21939 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014617 B = 0.002278 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.181538 B =12286.173615 C =13623.581789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.238 4.238 7 H 0.087 0.913 8 C -0.073 4.073 9 N -0.950 5.950 10 Si 0.982 3.018 11 H -0.288 1.288 12 H -0.264 1.264 13 H -0.296 1.296 14 C 0.155 3.845 15 C 0.136 3.864 16 H 0.068 0.932 17 N -0.685 5.685 18 C 0.551 3.449 19 O -0.573 6.573 20 C -0.055 4.055 21 C -0.168 4.168 22 C 0.148 3.852 23 N -0.532 5.532 24 C 0.313 3.687 25 O -0.309 6.309 26 C 0.046 3.954 27 C -0.156 4.156 28 C -0.125 4.125 29 C -0.136 4.136 30 C -0.160 4.160 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.243 0.757 37 H 0.060 0.940 38 H -0.007 1.007 39 H 0.417 0.583 40 H 0.178 0.822 41 H 0.213 0.787 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 18.095 16.847 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.121 0.879 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.367 4.367 7 H 0.105 0.895 8 C -0.265 4.265 9 N -0.599 5.599 10 Si 0.810 3.190 11 H -0.215 1.215 12 H -0.188 1.188 13 H -0.223 1.223 14 C 0.029 3.971 15 C 0.030 3.970 16 H 0.086 0.914 17 N -0.337 5.337 18 C 0.338 3.662 19 O -0.452 6.452 20 C -0.066 4.066 21 C -0.188 4.188 22 C -0.008 4.008 23 N -0.256 5.256 24 C 0.135 3.865 25 O -0.216 6.216 26 C -0.009 4.009 27 C -0.194 4.194 28 C -0.162 4.162 29 C -0.173 4.173 30 C -0.182 4.182 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.011 0.989 39 H 0.256 0.744 40 H 0.195 0.805 41 H 0.230 0.770 42 H 0.137 0.863 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.437 17.363 17.741 26.557 hybrid contribution 1.015 -1.358 -1.237 2.099 sum -8.422 16.005 16.504 24.484 Atomic orbital electron populations 1.21712 0.91803 1.02012 1.03282 1.22385 0.97518 0.99236 0.91908 0.87859 1.21627 0.88577 0.93374 0.95719 1.44691 1.32195 1.50898 1.07505 1.19497 1.06222 1.17335 0.93605 0.89477 1.25735 1.00531 1.02657 0.97581 1.70128 1.30153 1.47132 1.12503 0.85026 0.77270 0.78518 0.78219 1.21483 1.18806 1.22266 1.21883 0.91923 0.98376 0.84959 1.22241 0.97435 0.93014 0.84345 0.91419 1.45491 1.72697 1.10913 1.04557 1.18559 0.76295 0.87378 0.83974 1.90805 1.50983 1.16771 1.86632 1.20035 0.99698 0.94988 0.91865 1.22532 1.02163 0.91055 1.03082 1.23153 0.90734 1.02230 0.84654 1.67191 1.18314 1.10974 1.29129 1.19599 0.92569 0.88500 0.85815 1.86358 1.86200 1.36788 1.12293 1.24537 0.98763 0.94356 0.83275 1.23473 0.96338 1.02833 0.96781 1.22626 0.95125 1.02546 0.95912 1.23300 0.99629 1.02118 0.92299 1.21077 1.05295 1.01370 0.90451 0.90959 0.90119 0.93702 0.94606 0.95115 0.94698 0.92214 0.98912 0.74412 0.80489 0.77042 0.86333 0.90253 0.90485 0.88050 0.89367 0.89390 0.89628 0.85111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.17 71.98 0.66 -2.29 16 2 C -0.09 -2.72 3.15 -9.60 -0.03 -2.75 16 3 H 0.10 2.53 8.00 -2.39 -0.02 2.51 16 4 C 0.13 5.18 6.85 86.73 0.59 5.78 16 5 N -0.63 -32.79 3.39 -691.97 -2.35 -35.14 16 6 C -0.24 -13.62 10.27 84.03 0.86 -12.75 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 8 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 9 N -0.95 -60.14 10.09 21.65 0.22 -59.92 16 10 Si 0.98 47.35 29.55 68.60 2.03 49.37 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 14 C 0.16 7.99 5.58 86.86 0.48 8.47 16 15 C 0.14 5.20 2.76 46.38 0.13 5.33 16 16 H 0.07 2.96 7.64 -2.39 -0.02 2.94 16 17 N -0.68 -20.85 5.19 -438.54 -2.28 -23.13 16 18 C 0.55 19.50 7.80 86.88 0.68 20.17 16 19 O -0.57 -26.63 16.19 -3.75 -0.06 -26.69 16 20 C -0.06 -1.53 5.91 -19.90 -0.12 -1.65 16 21 C -0.17 -2.97 9.61 22.63 0.22 -2.75 16 22 C 0.15 2.29 11.17 84.62 0.94 3.24 16 23 N -0.53 -11.47 8.56 -309.14 -2.65 -14.12 16 24 C 0.31 8.32 7.49 84.80 0.63 8.96 16 25 O -0.31 -8.03 10.12 -90.05 -0.91 -8.94 16 26 C 0.05 0.88 4.18 31.12 0.13 1.01 16 27 C -0.16 -2.52 7.91 31.12 0.25 -2.27 16 28 C -0.12 -1.38 8.08 31.12 0.25 -1.13 16 29 C -0.14 -1.93 7.91 31.12 0.25 -1.69 16 30 C -0.16 -4.82 9.61 22.75 0.22 -4.60 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.03 1.19 7.78 -2.39 -0.02 1.18 16 36 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.06 3.75 5.87 -2.39 -0.01 3.74 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.42 8.67 6.65 -92.71 -0.62 8.05 16 40 H 0.18 1.78 6.53 -2.91 -0.02 1.76 16 41 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.12 2.15 6.87 -2.39 -0.02 2.13 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 49 H 0.13 4.41 7.74 -2.91 -0.02 4.39 16 Total: -1.00 -81.86 398.14 0.97 -80.89 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.35 Total: 20.43 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 6.62 Total: 17.24 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -7.05 Total: -132.30 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.97 Total: -35.64 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -81.86 0.97 -80.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080689166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.923 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds