Wall clock time and date at job start Wed Apr 1 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.91452 * 2 1 4 4 C 1.54910 * 111.00303 * 236.10040 * 2 1 3 5 5 N 1.47428 * 104.83384 * 204.91529 * 4 2 1 6 6 C 1.36933 * 125.65091 * 204.09288 * 5 4 2 7 7 H 1.07997 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99985 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99898 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47509 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47198 * 120.00173 * 10 8 6 13 13 H 1.48508 * 109.46849 * 239.99625 * 10 8 6 14 14 C 1.47030 * 108.69867 * 24.12761 * 5 4 2 15 15 C 1.54318 * 107.27360 * 358.94074 * 14 5 4 16 16 H 1.09000 * 110.72108 * 96.34639 * 15 14 5 17 17 N 1.46499 * 110.72136 * 219.44331 * 15 14 5 18 18 C 1.34776 * 119.99906 * 273.54514 * 17 15 14 19 19 O 1.21549 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.47859 * 119.99890 * 179.97438 * 18 17 15 21 21 C 1.39712 * 120.07518 * 0.25888 * 20 18 17 22 22 C 1.38055 * 120.14659 * 180.25308 * 21 20 18 23 23 C 1.38096 * 120.29291 * 359.74208 * 22 21 20 24 24 C 1.39661 * 120.14801 * 0.02562 * 23 22 21 25 25 C 1.47863 * 120.07610 * 179.97438 * 24 23 22 26 26 O 1.21548 * 120.00527 * 147.88610 * 25 24 23 27 27 N 1.34784 * 119.99513 * 327.88762 * 25 24 23 28 28 C 1.46504 * 119.99551 * 184.30482 * 27 25 24 29 29 C 1.46497 * 120.00082 * 4.30350 * 27 25 24 30 30 C 1.39294 * 120.07342 * 179.97438 * 20 18 17 31 31 H 1.08999 * 109.47433 * 296.09878 * 1 2 3 32 32 H 1.09010 * 109.47485 * 56.09548 * 1 2 3 33 33 H 1.09004 * 109.47245 * 176.09723 * 1 2 3 34 34 H 1.09007 * 110.36750 * 86.07761 * 4 2 1 35 35 H 1.08996 * 110.46129 * 323.80154 * 4 2 1 36 36 H 0.96996 * 120.00024 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.87986 * 239.51959 * 14 5 4 38 38 H 1.08998 * 110.00920 * 118.43490 * 14 5 4 39 39 H 0.97001 * 119.99780 * 93.54736 * 17 15 14 40 40 H 1.08005 * 119.92288 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.84912 * 179.76508 * 22 21 20 42 42 H 1.08003 * 119.92694 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.46787 * 90.00297 * 28 27 25 44 44 H 1.08995 * 109.46723 * 209.99809 * 28 27 25 45 45 H 1.09000 * 109.47348 * 329.99947 * 28 27 25 46 46 H 1.09003 * 109.46683 * 94.72273 * 29 27 25 47 47 H 1.09000 * 109.47214 * 214.71561 * 29 27 25 48 48 H 1.08997 * 109.47052 * 334.72462 * 29 27 25 49 49 H 1.08000 * 120.14865 * 0.03201 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4639 -1.5667 -1.6073 7 1 4.3332 -1.5116 -2.6779 8 6 5.6830 -1.9654 -1.0765 9 7 5.8425 -2.0320 0.2283 10 14 7.0976 -2.4062 -2.2140 11 1 6.6648 -2.2499 -3.6258 12 1 8.2475 -1.5057 -1.9457 13 1 7.5051 -3.8140 -1.9746 14 6 3.4674 -1.2741 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4239 17 7 2.2286 0.0495 2.3815 18 6 2.3021 -0.5006 3.6097 19 8 2.2507 -1.7081 3.7389 20 6 2.4465 0.3648 4.7998 21 6 2.5015 1.7531 4.6535 22 6 2.6415 2.5622 5.7633 23 6 2.7229 2.0064 7.0249 24 6 2.6644 0.6203 7.1857 25 6 2.7522 0.0268 8.5372 26 8 2.1578 -1.0032 8.7885 27 7 3.4913 0.6281 9.4905 28 6 3.6553 -0.0078 10.8000 29 6 4.1308 1.9175 9.2170 30 6 2.5221 -0.2021 6.0700 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5733 -0.8530 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1719 -2.0837 35 1 1.4524 -1.6703 -1.4044 36 1 6.6944 -2.3103 0.5992 37 1 4.2426 -0.5998 1.0599 38 1 3.6662 -2.2884 1.0423 39 1 2.2700 1.0131 2.2783 40 1 2.4388 2.1941 3.6696 41 1 2.6873 3.6347 5.6443 42 1 2.8328 2.6449 7.8890 43 1 4.5335 -0.6532 10.7831 44 1 3.7833 0.7598 11.5632 45 1 2.7712 -0.6031 11.0282 46 1 3.4869 2.7240 9.5680 47 1 5.0883 1.9654 9.7355 48 1 4.2926 2.0225 8.1443 49 1 2.4760 -1.2745 6.1890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080798669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:06 Heat of formation + Delta-G solvation = 8.248704 kcal Electronic energy + Delta-G solvation = -30061.628420 eV Core-core repulsion = 25990.450809 eV Total energy + Delta-G solvation = -4071.177611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.82266 -39.71985 -38.26818 -37.26930 -35.98121 -34.00877 -32.79983 -31.77900 -31.30404 -30.36689 -28.53577 -27.63411 -26.80391 -25.64087 -24.34450 -23.46728 -22.90098 -21.04668 -20.26056 -20.00571 -19.42846 -17.87064 -17.01155 -16.89301 -16.48347 -16.17847 -16.17400 -15.74539 -15.07128 -14.60655 -14.49535 -14.43315 -13.96293 -13.81107 -13.70679 -13.53149 -13.16935 -13.13186 -13.05051 -12.79704 -12.67909 -12.57062 -12.39433 -11.94302 -11.76610 -11.68675 -11.45857 -11.33691 -11.02252 -10.78790 -10.61692 -10.37241 -10.21549 -9.97192 -9.90762 -9.72480 -9.58721 -9.29863 -9.17380 -9.03959 -8.61227 -8.48130 -6.82033 -5.67448 -3.02941 0.48630 0.90956 2.39824 2.60268 3.06505 3.39815 3.42132 3.46746 3.49586 3.80278 4.11120 4.41729 4.51442 4.58038 4.69195 4.80669 4.84642 4.91603 4.97264 5.06822 5.16788 5.19001 5.27152 5.30665 5.38606 5.43620 5.48550 5.56319 5.65746 5.75242 5.93781 5.96676 5.98303 6.00996 6.05900 6.09929 6.14713 6.20928 6.35343 6.48833 6.51191 6.62653 6.75582 6.92889 6.93778 7.57408 7.59968 7.83564 7.84983 7.89568 8.27177 8.52956 9.23194 9.83981 10.48757 11.43096 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002515 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.298341 B =11131.728417 C =12259.611860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.088 0.912 17 N -0.706 5.706 18 C 0.554 3.446 19 O -0.527 6.527 20 C -0.128 4.128 21 C -0.062 4.062 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.144 4.144 25 C 0.561 3.439 26 O -0.528 6.528 27 N -0.619 5.619 28 C 0.085 3.915 29 C 0.059 3.941 30 C -0.004 4.004 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.394 0.606 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 15.230 17.216 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.357 5.357 18 C 0.340 3.660 19 O -0.404 6.404 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.147 4.147 25 C 0.350 3.650 26 O -0.405 6.405 27 N -0.353 5.353 28 C -0.058 4.058 29 C -0.084 4.084 30 C -0.024 4.024 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.229 0.771 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.112 0.888 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.411 13.701 17.455 23.395 hybrid contribution 1.042 0.374 -0.542 1.232 sum -6.369 14.075 16.914 22.907 Atomic orbital electron populations 1.21708 0.94984 1.01896 1.00984 1.22609 0.94851 0.99466 0.96376 0.90456 1.21588 0.87663 0.95047 0.94269 1.44424 1.07869 1.79216 1.01795 1.19086 0.89271 1.38528 0.88936 0.90270 1.24838 0.97912 1.01726 0.96007 1.69985 1.24083 1.53241 1.09168 0.86051 0.82388 0.77795 0.79552 1.20511 1.21820 1.21742 1.21473 0.89933 1.00531 0.83308 1.22538 1.00466 0.92722 0.82690 0.89354 1.45827 1.73850 1.10111 1.05866 1.18077 0.77176 0.87746 0.82984 1.90812 1.49286 1.14218 1.86080 1.20064 1.05226 0.93736 0.94071 1.21583 0.94481 0.92454 0.99573 1.21053 1.01898 1.00348 0.91903 1.22006 0.95742 0.93896 0.98678 1.19737 1.07667 0.94126 0.93178 1.18352 0.78573 0.83838 0.84282 1.90807 1.44739 1.23753 1.81168 1.47583 1.51180 1.22451 1.14042 1.21672 1.02906 0.98278 0.82909 1.22498 0.97889 0.84182 1.03791 1.21337 0.90242 1.01247 0.89558 0.93090 0.92744 0.92516 0.93968 0.95988 0.93782 0.93156 0.93315 0.77124 0.84951 0.84638 0.83788 0.92438 0.91088 0.90212 0.91972 0.91003 0.88828 0.83547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 37.15 0.35 -1.46 16 2 C -0.11 -1.85 3.25 -88.47 -0.29 -2.14 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 4 C 0.14 2.85 6.70 -2.53 -0.02 2.83 16 5 N -0.61 -15.58 3.39 -170.07 -0.58 -16.16 16 6 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 10 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.17 4.33 5.12 -3.06 -0.02 4.32 16 15 C 0.12 2.31 2.70 -66.10 -0.18 2.13 16 16 H 0.09 1.81 7.59 -51.93 -0.39 1.42 16 17 N -0.71 -11.39 5.08 -52.97 -0.27 -11.65 16 18 C 0.55 9.77 7.77 -12.32 -0.10 9.68 16 19 O -0.53 -11.62 16.06 5.32 0.09 -11.54 16 20 C -0.13 -1.79 5.87 -105.02 -0.62 -2.40 16 21 C -0.06 -0.63 9.54 -39.10 -0.37 -1.00 16 22 C -0.13 -1.05 10.02 -39.70 -0.40 -1.45 16 23 C -0.08 -0.70 7.43 -39.10 -0.29 -0.99 16 24 C -0.14 -1.71 5.46 -105.02 -0.57 -2.28 16 25 C 0.56 7.16 7.44 -12.32 -0.09 7.06 16 26 O -0.53 -8.76 16.31 5.32 0.09 -8.67 16 27 N -0.62 -5.62 3.27 -190.64 -0.62 -6.25 16 28 C 0.08 0.62 10.49 59.85 0.63 1.25 16 29 C 0.06 0.31 8.81 59.85 0.53 0.84 16 30 C 0.00 -0.06 9.14 -38.78 -0.35 -0.42 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.45 7.99 -51.93 -0.41 0.03 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 1.38 7.27 -51.93 -0.38 1.00 16 38 H 0.05 1.43 7.50 -51.93 -0.39 1.04 16 39 H 0.39 4.98 6.54 -40.82 -0.27 4.72 16 40 H 0.13 1.05 6.39 -52.48 -0.34 0.71 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.75 4.81 -52.48 -0.25 0.50 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 45 H 0.08 0.70 7.37 -51.93 -0.38 0.32 16 46 H 0.06 0.21 7.44 -51.93 -0.39 -0.18 16 47 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 48 H 0.09 0.52 4.71 -51.93 -0.24 0.28 16 49 H 0.15 2.43 7.54 -52.49 -0.40 2.03 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -37.34 394.29 -9.02 -46.36 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.17 Total: 2.69 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.04 Total: 9.02 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.90 Total: -61.20 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.34 -9.02 -46.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080798669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.612 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds