Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.91452 * 2 1 4 4 C 1.54910 * 111.00303 * 236.10040 * 2 1 3 5 5 N 1.47428 * 104.83384 * 204.91529 * 4 2 1 6 6 C 1.36933 * 125.65091 * 204.09288 * 5 4 2 7 7 H 1.07997 * 119.99923 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99985 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00279 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99898 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47509 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47198 * 120.00173 * 10 8 6 13 13 H 1.48508 * 109.46849 * 239.99625 * 10 8 6 14 14 C 1.47030 * 108.69867 * 24.12761 * 5 4 2 15 15 C 1.54318 * 107.27360 * 358.94074 * 14 5 4 16 16 H 1.09000 * 110.72108 * 96.34639 * 15 14 5 17 17 N 1.46499 * 110.72136 * 219.44331 * 15 14 5 18 18 C 1.34776 * 119.99906 * 273.54514 * 17 15 14 19 19 O 1.21549 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.47859 * 119.99890 * 179.97438 * 18 17 15 21 21 C 1.39712 * 120.07518 * 0.25888 * 20 18 17 22 22 C 1.38055 * 120.14659 * 180.25308 * 21 20 18 23 23 C 1.38096 * 120.29291 * 359.74208 * 22 21 20 24 24 C 1.39661 * 120.14801 * 0.02562 * 23 22 21 25 25 C 1.47863 * 120.07610 * 179.97438 * 24 23 22 26 26 O 1.21548 * 120.00527 * 147.88610 * 25 24 23 27 27 N 1.34784 * 119.99513 * 327.88762 * 25 24 23 28 28 C 1.46504 * 119.99551 * 184.30482 * 27 25 24 29 29 C 1.46497 * 120.00082 * 4.30350 * 27 25 24 30 30 C 1.39294 * 120.07342 * 179.97438 * 20 18 17 31 31 H 1.08999 * 109.47433 * 296.09878 * 1 2 3 32 32 H 1.09010 * 109.47485 * 56.09548 * 1 2 3 33 33 H 1.09004 * 109.47245 * 176.09723 * 1 2 3 34 34 H 1.09007 * 110.36750 * 86.07761 * 4 2 1 35 35 H 1.08996 * 110.46129 * 323.80154 * 4 2 1 36 36 H 0.96996 * 120.00024 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.87986 * 239.51959 * 14 5 4 38 38 H 1.08998 * 110.00920 * 118.43490 * 14 5 4 39 39 H 0.97001 * 119.99780 * 93.54736 * 17 15 14 40 40 H 1.08005 * 119.92288 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.84912 * 179.76508 * 22 21 20 42 42 H 1.08003 * 119.92694 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.46787 * 90.00297 * 28 27 25 44 44 H 1.08995 * 109.46723 * 209.99809 * 28 27 25 45 45 H 1.09000 * 109.47348 * 329.99947 * 28 27 25 46 46 H 1.09003 * 109.46683 * 94.72273 * 29 27 25 47 47 H 1.09000 * 109.47214 * 214.71561 * 29 27 25 48 48 H 1.08997 * 109.47052 * 334.72462 * 29 27 25 49 49 H 1.08000 * 120.14865 * 0.03201 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4639 -1.5667 -1.6073 7 1 4.3332 -1.5116 -2.6779 8 6 5.6830 -1.9654 -1.0765 9 7 5.8425 -2.0320 0.2283 10 14 7.0976 -2.4062 -2.2140 11 1 6.6648 -2.2499 -3.6258 12 1 8.2475 -1.5057 -1.9457 13 1 7.5051 -3.8140 -1.9746 14 6 3.4674 -1.2741 0.6960 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6632 1.4239 17 7 2.2286 0.0495 2.3815 18 6 2.3021 -0.5006 3.6097 19 8 2.2507 -1.7081 3.7389 20 6 2.4465 0.3648 4.7998 21 6 2.5015 1.7531 4.6535 22 6 2.6415 2.5622 5.7633 23 6 2.7229 2.0064 7.0249 24 6 2.6644 0.6203 7.1857 25 6 2.7522 0.0268 8.5372 26 8 2.1578 -1.0032 8.7885 27 7 3.4913 0.6281 9.4905 28 6 3.6553 -0.0078 10.8000 29 6 4.1308 1.9175 9.2170 30 6 2.5221 -0.2021 6.0700 31 1 -0.3634 0.4521 0.9229 32 1 -0.3634 0.5733 -0.8530 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1719 -2.0837 35 1 1.4524 -1.6703 -1.4044 36 1 6.6944 -2.3103 0.5992 37 1 4.2426 -0.5998 1.0599 38 1 3.6662 -2.2884 1.0423 39 1 2.2700 1.0131 2.2783 40 1 2.4388 2.1941 3.6696 41 1 2.6873 3.6347 5.6443 42 1 2.8328 2.6449 7.8890 43 1 4.5335 -0.6532 10.7831 44 1 3.7833 0.7598 11.5632 45 1 2.7712 -0.6031 11.0282 46 1 3.4869 2.7240 9.5680 47 1 5.0883 1.9654 9.7355 48 1 4.2926 2.0225 8.1443 49 1 2.4760 -1.2745 6.1890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080798669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = -19.197889 kcal Electronic energy + Delta-G solvation = -30062.818594 eV Core-core repulsion = 25990.450809 eV Total energy + Delta-G solvation = -4072.367784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.78431 -41.00670 -39.52073 -38.67851 -36.80725 -35.73577 -34.44338 -32.79372 -32.18340 -32.15712 -29.70460 -28.79194 -27.54804 -27.37582 -25.76392 -24.63261 -23.94961 -22.40947 -21.63658 -21.51242 -20.60414 -18.98741 -18.85124 -17.87522 -17.65660 -17.18273 -17.07103 -16.93063 -16.79408 -15.99614 -15.73300 -15.57284 -15.44722 -14.99958 -14.77686 -14.61485 -14.36778 -14.35608 -14.09471 -13.85586 -13.72841 -13.62754 -13.34485 -13.29647 -13.06707 -13.01476 -12.90599 -12.64665 -12.59668 -12.22038 -12.14259 -12.05514 -11.87165 -11.65718 -11.47584 -11.21987 -11.00142 -10.77701 -10.21571 -10.16265 -9.91483 -9.74842 -8.94489 -7.85791 -5.24204 -0.38458 -0.03132 1.43041 1.45532 1.46269 1.55845 1.81051 1.94542 2.12465 2.48297 2.77079 3.32572 3.35129 3.47474 3.65626 3.75853 3.81121 3.94322 4.03052 4.04909 4.10650 4.24854 4.29217 4.38791 4.45872 4.47087 4.57304 4.63632 4.71915 4.72239 4.83935 4.88370 4.89093 4.90177 5.05663 5.07316 5.11838 5.17225 5.19737 5.22499 5.28183 5.40650 5.44058 5.49644 5.59282 5.72125 5.76542 6.14875 6.18163 6.51602 6.95999 7.04320 7.19360 7.74197 8.38056 9.23448 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.002515 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.298341 B =11131.728417 C =12259.611860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.099 0.901 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.239 4.239 7 H 0.091 0.909 8 C -0.073 4.073 9 N -0.954 5.954 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.290 1.290 13 H -0.299 1.299 14 C 0.189 3.811 15 C 0.134 3.866 16 H 0.069 0.931 17 N -0.690 5.690 18 C 0.548 3.452 19 O -0.588 6.588 20 C -0.151 4.151 21 C -0.053 4.053 22 C -0.114 4.114 23 C -0.060 4.060 24 C -0.155 4.155 25 C 0.549 3.451 26 O -0.587 6.587 27 N -0.612 5.612 28 C 0.079 3.921 29 C 0.047 3.953 30 C -0.033 4.033 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.243 0.757 37 H 0.019 0.981 38 H -0.015 1.015 39 H 0.415 0.585 40 H 0.160 0.840 41 H 0.189 0.811 42 H 0.187 0.813 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 20.794 17.143 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 H 0.117 0.883 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.108 0.892 8 C -0.265 4.265 9 N -0.603 5.603 10 Si 0.810 3.190 11 H -0.183 1.183 12 H -0.217 1.217 13 H -0.226 1.226 14 C 0.063 3.937 15 C 0.028 3.972 16 H 0.087 0.913 17 N -0.342 5.342 18 C 0.337 3.663 19 O -0.469 6.469 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.158 4.158 25 C 0.338 3.662 26 O -0.468 6.468 27 N -0.343 5.343 28 C -0.062 4.062 29 C -0.093 4.093 30 C -0.053 4.053 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.003 0.997 39 H 0.254 0.746 40 H 0.178 0.822 41 H 0.206 0.794 42 H 0.204 0.796 43 H 0.075 0.925 44 H 0.128 0.872 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.921 19.368 17.365 27.192 hybrid contribution 1.228 -1.316 -0.445 1.854 sum -6.693 18.053 16.919 25.632 Atomic orbital electron populations 1.21672 0.91637 1.02230 1.03236 1.22542 0.97311 0.99072 0.92090 0.88270 1.21881 0.85096 0.95833 0.96556 1.44751 1.09606 1.79216 1.01868 1.19565 0.89978 1.37357 0.89869 0.89153 1.25767 1.00858 1.02475 0.97435 1.70263 1.24058 1.54768 1.11212 0.84961 0.78870 0.76644 0.78569 1.18299 1.21669 1.22610 1.21077 0.92632 0.96398 0.83617 1.22105 0.96574 0.93645 0.84866 0.91277 1.45574 1.73192 1.10826 1.04563 1.18806 0.75613 0.87535 0.84341 1.90775 1.52025 1.17136 1.86999 1.19756 1.08734 0.95222 0.91720 1.21927 0.92849 0.90294 1.02077 1.21635 0.98780 1.02464 0.90296 1.22515 0.92419 0.92092 1.00772 1.19748 1.08596 0.95747 0.91707 1.18672 0.78749 0.83457 0.85293 1.90769 1.47551 1.26320 1.82154 1.47766 1.49574 1.23406 1.13598 1.21827 1.01852 0.99445 0.83121 1.22841 0.99433 0.82817 1.04225 1.21101 0.93052 0.99744 0.91396 0.91215 0.89967 0.93344 0.92209 0.95876 0.94780 0.96263 0.99691 0.74622 0.82208 0.79396 0.79596 0.92482 0.87165 0.92387 0.88576 0.88898 0.88954 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.31 71.98 0.67 -2.31 16 2 C -0.09 -2.80 3.25 -9.40 -0.03 -2.83 16 3 H 0.10 2.69 8.00 -2.39 -0.02 2.67 16 4 C 0.13 5.20 6.70 86.85 0.58 5.78 16 5 N -0.63 -33.16 3.39 -691.98 -2.35 -35.51 16 6 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 7 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 8 C -0.07 -4.31 5.49 84.86 0.47 -3.85 16 9 N -0.95 -61.02 10.31 21.65 0.22 -60.80 16 10 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 14 C 0.19 10.10 5.12 86.73 0.44 10.55 16 15 C 0.13 5.32 2.70 46.18 0.12 5.45 16 16 H 0.07 3.03 7.59 -2.39 -0.02 3.01 16 17 N -0.69 -22.63 5.08 -439.78 -2.23 -24.87 16 18 C 0.55 20.77 7.77 86.79 0.67 21.44 16 19 O -0.59 -29.03 16.06 -3.87 -0.06 -29.09 16 20 C -0.15 -4.38 5.87 -20.12 -0.12 -4.50 16 21 C -0.05 -0.91 9.54 22.58 0.22 -0.69 16 22 C -0.11 -1.17 10.02 22.19 0.22 -0.95 16 23 C -0.06 -0.75 7.43 22.58 0.17 -0.59 16 24 C -0.15 -3.69 5.46 -20.12 -0.11 -3.80 16 25 C 0.55 14.53 7.44 86.79 0.65 15.18 16 26 O -0.59 -21.44 16.31 -3.87 -0.06 -21.50 16 27 N -0.61 -10.27 3.27 -875.34 -2.87 -13.13 16 28 C 0.08 1.10 10.49 127.77 1.34 2.44 16 29 C 0.05 0.30 8.81 127.77 1.13 1.42 16 30 C -0.03 -1.04 9.14 22.79 0.21 -0.83 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 36 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.02 1.13 7.27 -2.39 -0.02 1.11 16 38 H -0.02 -0.99 7.50 -2.39 -0.02 -1.01 16 39 H 0.41 9.73 6.54 -92.71 -0.61 9.13 16 40 H 0.16 1.80 6.39 -2.91 -0.02 1.78 16 41 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 42 H 0.19 0.78 4.81 -2.91 -0.01 0.76 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.11 0.65 8.07 -2.39 -0.02 0.63 16 45 H 0.06 1.08 7.37 -2.39 -0.02 1.06 16 46 H 0.10 0.04 7.44 -2.39 -0.02 0.03 16 47 H 0.09 0.28 8.11 -2.39 -0.02 0.26 16 48 H 0.09 0.63 4.71 -2.39 -0.01 0.62 16 49 H 0.10 4.03 7.54 -2.91 -0.02 4.01 16 Total: -1.00 -95.47 394.29 2.54 -92.94 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.37 Total: 13.61 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 7.49 Total: 29.11 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -7.23 Total: -134.31 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.13 Total: -50.60 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -95.47 2.54 -92.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080798669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.738 kcal (2) G-P(sol) polarization free energy of solvation -95.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds