Wall clock time and date at job start Wed Apr 1 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 110.91804 * 2 1 4 4 C 1.54913 * 111.00705 * 236.09956 * 2 1 3 5 5 N 1.47426 * 104.83470 * 204.91693 * 4 2 1 6 6 C 1.36934 * 125.64476 * 204.09533 * 5 4 2 7 7 H 1.07997 * 120.00132 * 354.83198 * 6 5 4 8 8 C 1.38811 * 119.99781 * 174.83882 * 6 5 4 9 9 N 1.31626 * 119.99907 * 7.16394 * 8 6 5 10 10 Si 1.86798 * 120.00046 * 187.16609 * 8 6 5 11 11 H 1.48500 * 109.47091 * 94.98448 * 10 8 6 12 12 H 1.48497 * 109.47173 * 214.98115 * 10 8 6 13 13 H 1.48499 * 109.47391 * 334.98209 * 10 8 6 14 14 C 1.47022 * 108.70316 * 24.12473 * 5 4 2 15 15 C 1.54325 * 107.27309 * 358.94160 * 14 5 4 16 16 H 1.09003 * 110.71769 * 96.34673 * 15 14 5 17 17 N 1.46492 * 110.72291 * 219.44650 * 15 14 5 18 18 C 1.34788 * 119.99716 * 273.54797 * 17 15 14 19 19 O 1.21526 * 119.99860 * 359.97438 * 18 17 15 20 20 C 1.48033 * 119.99936 * 179.97438 * 18 17 15 21 21 C 1.39559 * 120.00016 * 359.72552 * 20 18 17 22 22 C 1.37818 * 119.99745 * 179.79090 * 21 20 18 23 23 C 1.39553 * 120.00159 * 0.45674 * 22 21 20 24 24 C 1.48035 * 120.00236 * 179.76699 * 23 22 21 25 25 O 1.21519 * 119.99962 * 148.81642 * 24 23 22 26 26 N 1.34778 * 119.99693 * 328.82231 * 24 23 22 27 27 C 1.46498 * 119.99654 * 183.65099 * 26 24 23 28 28 C 1.46505 * 120.00223 * 3.64491 * 26 24 23 29 29 C 1.39560 * 120.00050 * 359.79579 * 23 22 21 30 30 C 1.37817 * 119.99715 * 359.96991 * 29 23 22 31 31 H 1.08998 * 109.47546 * 296.09616 * 1 2 3 32 32 H 1.08999 * 109.47652 * 56.09571 * 1 2 3 33 33 H 1.09007 * 109.47321 * 176.09938 * 1 2 3 34 34 H 1.09000 * 110.36662 * 86.07587 * 4 2 1 35 35 H 1.09005 * 110.45651 * 323.80395 * 4 2 1 36 36 H 0.96998 * 119.99737 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.88197 * 239.52516 * 14 5 4 38 38 H 1.09000 * 110.01102 * 118.43204 * 14 5 4 39 39 H 0.96997 * 120.00401 * 93.54471 * 17 15 14 40 40 H 1.08006 * 120.00038 * 0.02562 * 21 20 18 41 41 H 1.08004 * 119.99837 * 180.25321 * 22 21 20 42 42 H 1.08998 * 109.47535 * 0.02562 * 27 26 24 43 43 H 1.09006 * 109.47235 * 119.99834 * 27 26 24 44 44 H 1.09002 * 109.47120 * 239.99304 * 27 26 24 45 45 H 1.09000 * 109.46569 * 94.36431 * 28 26 24 46 46 H 1.09001 * 109.46946 * 214.36107 * 28 26 24 47 47 H 1.08992 * 109.47277 * 334.36845 * 28 26 24 48 48 H 1.07996 * 119.99958 * 179.97438 * 29 23 22 49 49 H 1.08001 * 119.99814 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5666 -1.6073 7 1 4.3095 -1.5928 -2.6758 8 6 5.7135 -1.8609 -1.0791 9 7 5.8688 -1.9677 0.2236 10 14 7.1745 -2.1055 -2.2171 11 1 7.9214 -0.8284 -2.3451 12 1 8.0701 -3.1485 -1.6557 13 1 6.6935 -2.5339 -3.5551 14 6 3.4675 -1.2741 0.6960 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2286 0.0496 2.3814 18 6 2.3022 -0.5005 3.6097 19 8 2.2500 -1.7077 3.7390 20 6 2.4468 0.3659 4.8013 21 6 2.5126 1.7520 4.6523 22 6 2.6428 2.5588 5.7620 23 6 2.7185 1.9894 7.0338 24 6 2.8635 2.8557 8.2254 25 8 2.3862 2.5115 9.2886 26 7 3.5249 4.0263 8.1309 27 6 3.7380 4.8457 9.3265 28 6 4.0309 4.4791 6.8327 29 6 2.6580 0.6030 7.1824 30 6 2.5229 -0.2036 6.0731 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1560 -0.1719 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.7420 -2.1730 0.5926 37 1 4.2426 -0.5997 1.0599 38 1 3.6662 -2.2883 1.0423 39 1 2.2700 1.0132 2.2783 40 1 2.4576 2.1926 3.6677 41 1 2.6896 3.6317 5.6471 42 1 3.2952 4.3500 10.1904 43 1 4.8075 4.9763 9.4916 44 1 3.2703 5.8203 9.1870 45 1 3.3001 5.1417 6.3691 46 1 4.9689 5.0157 6.9755 47 1 4.2001 3.6169 6.1879 48 1 2.7169 0.1623 8.1665 49 1 2.4765 -1.2764 6.1879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080800180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:11 Heat of formation + Delta-G solvation = 8.122815 kcal Electronic energy + Delta-G solvation = -29985.397664 eV Core-core repulsion = 25914.214594 eV Total energy + Delta-G solvation = -4071.183070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.87061 -39.80966 -38.29442 -37.28036 -36.06116 -34.04819 -32.80067 -31.88859 -31.26367 -30.40181 -28.42529 -27.88909 -26.86188 -25.66238 -24.42251 -23.37487 -22.77272 -20.97797 -20.24079 -20.05810 -19.65665 -17.85240 -17.47026 -16.89627 -16.77780 -16.25624 -15.89960 -15.19173 -15.09857 -14.79888 -14.63219 -14.47051 -14.03910 -13.86037 -13.73156 -13.56044 -13.20049 -13.13893 -12.87196 -12.82780 -12.66925 -12.63293 -12.45384 -12.16917 -11.95694 -11.72346 -11.37501 -11.22300 -11.03538 -10.80865 -10.65259 -10.41500 -10.29744 -10.01822 -9.94657 -9.74660 -9.63698 -9.32576 -9.16914 -9.09504 -8.62838 -8.51529 -6.84662 -5.71496 -3.05768 0.33187 1.07933 2.28525 2.55532 3.04846 3.34840 3.39750 3.44828 3.47398 3.76991 4.04992 4.41521 4.49109 4.56466 4.70695 4.76525 4.85619 4.95435 5.04883 5.05130 5.12201 5.17761 5.26349 5.26653 5.38616 5.41480 5.44774 5.53390 5.67186 5.72138 5.88488 5.91436 5.94869 5.95912 6.07199 6.11623 6.11866 6.19070 6.32321 6.45602 6.51652 6.60226 6.71198 6.86728 6.89669 7.51556 7.59016 7.73865 7.80740 7.85179 8.24167 8.46824 9.20098 9.81066 10.46170 11.39431 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.002430 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.701470 B =11517.871374 C =12380.598189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.172 3.828 15 C 0.120 3.880 16 H 0.088 0.912 17 N -0.705 5.705 18 C 0.551 3.449 19 O -0.527 6.527 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.111 4.111 23 C -0.119 4.119 24 C 0.560 3.440 25 O -0.534 6.534 26 N -0.616 5.616 27 C 0.079 3.921 28 C 0.057 3.943 29 C -0.069 4.069 30 C -0.068 4.068 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.395 0.605 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.138 0.862 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 15.916 12.906 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.106 0.894 17 N -0.355 5.355 18 C 0.337 3.663 19 O -0.404 6.404 20 C -0.100 4.100 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.122 4.122 24 C 0.349 3.651 25 O -0.411 6.411 26 N -0.350 5.350 27 C -0.063 4.063 28 C -0.085 4.085 29 C -0.088 4.088 30 C -0.087 4.087 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.156 0.844 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.699 14.793 13.566 21.498 hybrid contribution 1.037 0.489 -0.691 1.338 sum -6.662 15.282 12.875 21.064 Atomic orbital electron populations 1.21708 0.94984 1.01889 1.01007 1.22610 0.94841 0.99486 0.96350 0.90429 1.21594 0.87644 0.95021 0.94319 1.44417 1.08100 1.79003 1.01750 1.19045 0.87345 1.40470 0.89114 0.90296 1.24850 0.97650 1.01825 0.96003 1.69993 1.22532 1.54256 1.09518 0.86125 0.82805 0.77360 0.79645 1.21664 1.21770 1.20612 1.21482 0.89977 1.00458 0.83406 1.22542 1.00464 0.92723 0.82709 0.89357 1.45854 1.73583 1.10186 1.05908 1.18206 0.77227 0.87781 0.83071 1.90794 1.49281 1.14239 1.86112 1.20337 1.01488 0.93707 0.94431 1.21306 0.98475 0.92500 0.99173 1.21799 0.98769 1.01135 0.91193 1.19942 1.04881 0.94367 0.93026 1.18476 0.77758 0.80642 0.88230 1.90769 1.47893 1.72804 1.29672 1.47584 1.56487 1.21010 1.09902 1.21721 1.01525 0.94872 0.88169 1.22534 0.99572 1.01520 0.84920 1.21181 0.96489 0.91577 0.99533 1.21308 0.95595 1.01334 0.90428 0.93091 0.92722 0.92527 0.93895 0.96035 0.93724 0.93003 0.93508 0.77054 0.84776 0.83506 0.89366 0.91960 0.92024 0.91786 0.90920 0.88614 0.84370 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.31 37.15 0.35 -1.40 16 2 C -0.11 -1.80 3.25 -88.47 -0.29 -2.08 16 3 H 0.08 1.16 8.00 -51.92 -0.42 0.75 16 4 C 0.14 2.78 6.70 -2.53 -0.02 2.77 16 5 N -0.61 -15.28 3.39 -170.07 -0.58 -15.86 16 6 C -0.23 -6.41 10.26 -15.06 -0.15 -6.57 16 7 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 8 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 9 N -0.92 -27.20 10.36 55.49 0.57 -26.63 16 10 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.17 4.21 5.13 -3.06 -0.02 4.19 16 15 C 0.12 2.23 2.70 -66.10 -0.18 2.05 16 16 H 0.09 1.75 7.59 -51.93 -0.39 1.35 16 17 N -0.70 -10.87 5.08 -52.91 -0.27 -11.14 16 18 C 0.55 9.17 7.78 -12.24 -0.10 9.08 16 19 O -0.53 -10.94 16.06 5.34 0.09 -10.86 16 20 C -0.10 -1.26 5.88 -104.90 -0.62 -1.88 16 21 C -0.10 -0.95 9.53 -39.24 -0.37 -1.32 16 22 C -0.11 -0.97 7.43 -39.24 -0.29 -1.26 16 23 C -0.12 -1.28 5.48 -104.90 -0.58 -1.85 16 24 C 0.56 6.36 7.45 -12.24 -0.09 6.27 16 25 O -0.53 -7.78 16.06 5.35 0.09 -7.69 16 26 N -0.62 -5.15 3.27 -190.57 -0.62 -5.77 16 27 C 0.08 0.52 10.70 59.85 0.64 1.16 16 28 C 0.06 0.30 8.83 59.85 0.53 0.83 16 29 C -0.07 -0.79 9.58 -39.24 -0.38 -1.17 16 30 C -0.07 -0.86 9.58 -39.24 -0.38 -1.23 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.05 1.39 7.19 -51.93 -0.37 1.02 16 38 H 0.05 1.34 7.61 -51.93 -0.39 0.95 16 39 H 0.39 4.76 6.54 -40.82 -0.27 4.50 16 40 H 0.13 1.01 6.39 -52.48 -0.34 0.67 16 41 H 0.15 0.85 4.73 -52.48 -0.25 0.60 16 42 H 0.09 0.72 6.90 -51.93 -0.36 0.36 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.24 7.40 -51.93 -0.38 -0.15 16 46 H 0.07 0.29 8.10 -51.93 -0.42 -0.14 16 47 H 0.10 0.56 4.75 -51.93 -0.25 0.31 16 48 H 0.14 1.48 7.93 -52.49 -0.42 1.06 16 49 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -35.94 393.89 -8.99 -44.93 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.15 Total: 2.73 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.03 Total: 7.32 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.90 Total: -59.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.94 -8.99 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080800180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.052 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds