Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 110.91804 * 2 1 4 4 C 1.54913 * 111.00705 * 236.09956 * 2 1 3 5 5 N 1.47426 * 104.83470 * 204.91693 * 4 2 1 6 6 C 1.36934 * 125.64476 * 204.09533 * 5 4 2 7 7 H 1.07997 * 120.00132 * 354.83198 * 6 5 4 8 8 C 1.38811 * 119.99781 * 174.83882 * 6 5 4 9 9 N 1.31626 * 119.99907 * 7.16394 * 8 6 5 10 10 Si 1.86798 * 120.00046 * 187.16609 * 8 6 5 11 11 H 1.48500 * 109.47091 * 94.98448 * 10 8 6 12 12 H 1.48497 * 109.47173 * 214.98115 * 10 8 6 13 13 H 1.48499 * 109.47391 * 334.98209 * 10 8 6 14 14 C 1.47022 * 108.70316 * 24.12473 * 5 4 2 15 15 C 1.54325 * 107.27309 * 358.94160 * 14 5 4 16 16 H 1.09003 * 110.71769 * 96.34673 * 15 14 5 17 17 N 1.46492 * 110.72291 * 219.44650 * 15 14 5 18 18 C 1.34788 * 119.99716 * 273.54797 * 17 15 14 19 19 O 1.21526 * 119.99860 * 359.97438 * 18 17 15 20 20 C 1.48033 * 119.99936 * 179.97438 * 18 17 15 21 21 C 1.39559 * 120.00016 * 359.72552 * 20 18 17 22 22 C 1.37818 * 119.99745 * 179.79090 * 21 20 18 23 23 C 1.39553 * 120.00159 * 0.45674 * 22 21 20 24 24 C 1.48035 * 120.00236 * 179.76699 * 23 22 21 25 25 O 1.21519 * 119.99962 * 148.81642 * 24 23 22 26 26 N 1.34778 * 119.99693 * 328.82231 * 24 23 22 27 27 C 1.46498 * 119.99654 * 183.65099 * 26 24 23 28 28 C 1.46505 * 120.00223 * 3.64491 * 26 24 23 29 29 C 1.39560 * 120.00050 * 359.79579 * 23 22 21 30 30 C 1.37817 * 119.99715 * 359.96991 * 29 23 22 31 31 H 1.08998 * 109.47546 * 296.09616 * 1 2 3 32 32 H 1.08999 * 109.47652 * 56.09571 * 1 2 3 33 33 H 1.09007 * 109.47321 * 176.09938 * 1 2 3 34 34 H 1.09000 * 110.36662 * 86.07587 * 4 2 1 35 35 H 1.09005 * 110.45651 * 323.80395 * 4 2 1 36 36 H 0.96998 * 119.99737 * 180.02562 * 9 8 6 37 37 H 1.09000 * 109.88197 * 239.52516 * 14 5 4 38 38 H 1.09000 * 110.01102 * 118.43204 * 14 5 4 39 39 H 0.96997 * 120.00401 * 93.54471 * 17 15 14 40 40 H 1.08006 * 120.00038 * 0.02562 * 21 20 18 41 41 H 1.08004 * 119.99837 * 180.25321 * 22 21 20 42 42 H 1.08998 * 109.47535 * 0.02562 * 27 26 24 43 43 H 1.09006 * 109.47235 * 119.99834 * 27 26 24 44 44 H 1.09002 * 109.47120 * 239.99304 * 27 26 24 45 45 H 1.09000 * 109.46569 * 94.36431 * 28 26 24 46 46 H 1.09001 * 109.46946 * 214.36107 * 28 26 24 47 47 H 1.08992 * 109.47277 * 334.36845 * 28 26 24 48 48 H 1.07996 * 119.99958 * 179.97438 * 29 23 22 49 49 H 1.08001 * 119.99814 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5666 -1.6073 7 1 4.3095 -1.5928 -2.6758 8 6 5.7135 -1.8609 -1.0791 9 7 5.8688 -1.9677 0.2236 10 14 7.1745 -2.1055 -2.2171 11 1 7.9214 -0.8284 -2.3451 12 1 8.0701 -3.1485 -1.6557 13 1 6.6935 -2.5339 -3.5551 14 6 3.4675 -1.2741 0.6960 15 6 2.0862 -0.8079 1.2022 16 1 1.4479 -1.6632 1.4239 17 7 2.2286 0.0496 2.3814 18 6 2.3022 -0.5005 3.6097 19 8 2.2500 -1.7077 3.7390 20 6 2.4468 0.3659 4.8013 21 6 2.5126 1.7520 4.6523 22 6 2.6428 2.5588 5.7620 23 6 2.7185 1.9894 7.0338 24 6 2.8635 2.8557 8.2254 25 8 2.3862 2.5115 9.2886 26 7 3.5249 4.0263 8.1309 27 6 3.7380 4.8457 9.3265 28 6 4.0309 4.4791 6.8327 29 6 2.6580 0.6030 7.1824 30 6 2.5229 -0.2036 6.0731 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1560 -0.1719 -2.0837 35 1 1.4524 -1.6704 -1.4044 36 1 6.7420 -2.1730 0.5926 37 1 4.2426 -0.5997 1.0599 38 1 3.6662 -2.2883 1.0423 39 1 2.2700 1.0132 2.2783 40 1 2.4576 2.1926 3.6677 41 1 2.6896 3.6317 5.6471 42 1 3.2952 4.3500 10.1904 43 1 4.8075 4.9763 9.4916 44 1 3.2703 5.8203 9.1870 45 1 3.3001 5.1417 6.3691 46 1 4.9689 5.0157 6.9755 47 1 4.2001 3.6169 6.1879 48 1 2.7169 0.1623 8.1665 49 1 2.4765 -1.2764 6.1879 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080800180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = -16.834155 kcal Electronic energy + Delta-G solvation = -29986.479879 eV Core-core repulsion = 25914.214594 eV Total energy + Delta-G solvation = -4072.265285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.77647 -41.02133 -39.52766 -38.63978 -36.79278 -35.71154 -34.41620 -32.82108 -32.26750 -32.08023 -29.59984 -28.85815 -27.72329 -27.29971 -25.69635 -24.68101 -23.66770 -22.45766 -21.61052 -21.23905 -20.85496 -18.95909 -18.82444 -18.34217 -17.74425 -17.29638 -16.91451 -16.81722 -16.25132 -15.95493 -15.75727 -15.56185 -15.43320 -15.05373 -14.86155 -14.63933 -14.33786 -14.29531 -14.06484 -13.85657 -13.66339 -13.59986 -13.33251 -13.28439 -13.17514 -13.03180 -12.85480 -12.77727 -12.58933 -12.17709 -12.06645 -11.98017 -11.86373 -11.64736 -11.44202 -11.24376 -10.97548 -10.72561 -10.27100 -10.07978 -9.95071 -9.73214 -8.91618 -7.85268 -5.22084 -0.61516 0.24080 1.33566 1.45336 1.47264 1.56591 1.85403 1.99404 2.09587 2.49832 2.75678 3.29016 3.32786 3.53403 3.64263 3.74304 3.79796 3.83906 4.05965 4.11754 4.15247 4.23758 4.28637 4.43855 4.49610 4.51093 4.56133 4.63795 4.73018 4.73956 4.85935 4.90821 4.92157 4.92788 5.04324 5.08325 5.09698 5.13350 5.19251 5.23507 5.30993 5.40773 5.45262 5.52167 5.61138 5.65909 5.78817 6.17248 6.18024 6.53057 6.95545 7.06465 7.20155 7.76260 8.40272 9.24231 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.002430 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.701470 B =11517.871374 C =12380.598189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.088 0.912 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.979 3.021 11 H -0.283 1.283 12 H -0.301 1.301 13 H -0.265 1.265 14 C 0.187 3.813 15 C 0.135 3.865 16 H 0.072 0.928 17 N -0.691 5.691 18 C 0.548 3.452 19 O -0.580 6.580 20 C -0.115 4.115 21 C -0.082 4.082 22 C -0.092 4.092 23 C -0.119 4.119 24 C 0.553 3.447 25 O -0.578 6.578 26 N -0.611 5.611 27 C 0.075 3.925 28 C 0.046 3.954 29 C -0.076 4.076 30 C -0.080 4.080 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.023 0.977 36 H 0.244 0.756 37 H 0.022 0.978 38 H -0.015 1.015 39 H 0.415 0.585 40 H 0.166 0.834 41 H 0.188 0.812 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.137 0.863 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 20.114 11.534 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.209 1.209 12 H -0.228 1.228 13 H -0.190 1.190 14 C 0.061 3.939 15 C 0.029 3.971 16 H 0.090 0.910 17 N -0.342 5.342 18 C 0.337 3.663 19 O -0.461 6.461 20 C -0.118 4.118 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.123 4.123 24 C 0.342 3.658 25 O -0.459 6.459 26 N -0.342 5.342 27 C -0.067 4.067 28 C -0.095 4.095 29 C -0.095 4.095 30 C -0.099 4.099 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.003 0.997 39 H 0.254 0.746 40 H 0.184 0.816 41 H 0.204 0.796 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.155 0.845 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.502 19.080 12.146 24.163 hybrid contribution 1.304 -0.775 -0.246 1.536 sum -7.198 18.305 11.900 22.989 Atomic orbital electron populations 1.21671 0.91672 1.02251 1.03201 1.22539 0.97265 0.99072 0.92190 0.88367 1.21880 0.85127 0.95803 0.96584 1.44745 1.09765 1.79003 1.01920 1.19499 0.88228 1.39314 0.89963 0.89412 1.25733 1.00563 1.02457 0.97414 1.70256 1.22368 1.55899 1.11446 0.85049 0.79055 0.77001 0.78182 1.20950 1.22778 1.18975 1.21115 0.92756 0.96455 0.83579 1.22102 0.96549 0.93647 0.84795 0.90950 1.45617 1.73005 1.10892 1.04688 1.18811 0.75788 0.87561 0.84185 1.90767 1.51644 1.16777 1.86907 1.20120 1.04246 0.94847 0.92617 1.21604 0.96625 0.90739 1.01101 1.22184 0.96336 1.02859 0.89532 1.20094 1.04250 0.93866 0.94056 1.18589 0.78026 0.81534 0.87655 1.90750 1.50100 1.73985 1.31058 1.47756 1.54871 1.19919 1.11666 1.21875 1.02780 0.95192 0.86855 1.22805 1.01357 1.01913 0.83377 1.21160 0.97031 0.92320 0.99017 1.21213 0.96712 1.00904 0.91042 0.91149 0.90171 0.93252 0.92376 0.95896 0.94683 0.96025 0.99674 0.74649 0.81630 0.79556 0.91570 0.90153 0.89679 0.89016 0.88941 0.89045 0.84532 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.31 71.98 0.67 -2.13 16 2 C -0.09 -2.67 3.25 -9.40 -0.03 -2.71 16 3 H 0.10 2.54 8.00 -2.38 -0.02 2.52 16 4 C 0.13 5.02 6.70 86.86 0.58 5.60 16 5 N -0.63 -32.20 3.39 -691.97 -2.35 -34.55 16 6 C -0.24 -13.52 10.26 84.03 0.86 -12.66 16 7 H 0.09 4.63 7.84 -2.91 -0.02 4.61 16 8 C -0.07 -3.98 5.48 84.86 0.46 -3.51 16 9 N -0.95 -59.18 10.36 21.65 0.22 -58.96 16 10 Si 0.98 46.12 29.56 68.60 2.03 48.14 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 13 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 14 C 0.19 9.60 5.13 86.73 0.45 10.04 16 15 C 0.14 5.04 2.70 46.18 0.12 5.16 16 16 H 0.07 2.96 7.59 -2.39 -0.02 2.94 16 17 N -0.69 -20.87 5.08 -439.59 -2.23 -23.10 16 18 C 0.55 18.76 7.78 86.84 0.68 19.43 16 19 O -0.58 -25.82 16.06 -3.80 -0.06 -25.88 16 20 C -0.11 -3.00 5.88 -20.04 -0.12 -3.12 16 21 C -0.08 -1.39 9.53 22.49 0.21 -1.17 16 22 C -0.09 -1.28 7.43 22.49 0.17 -1.11 16 23 C -0.12 -2.40 5.48 -20.04 -0.11 -2.51 16 24 C 0.55 11.90 7.45 86.84 0.65 12.55 16 25 O -0.58 -17.01 16.06 -3.78 -0.06 -17.07 16 26 N -0.61 -8.53 3.27 -875.14 -2.87 -11.40 16 27 C 0.07 0.81 10.70 127.77 1.37 2.18 16 28 C 0.05 0.29 8.83 127.77 1.13 1.42 16 29 C -0.08 -1.80 9.58 22.49 0.22 -1.59 16 30 C -0.08 -2.13 9.58 22.49 0.22 -1.91 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.15 8.08 -2.38 -0.02 1.13 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.02 0.89 7.99 -2.38 -0.02 0.87 16 36 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.02 1.22 7.19 -2.39 -0.02 1.20 16 38 H -0.01 -0.94 7.61 -2.39 -0.02 -0.96 16 39 H 0.41 8.88 6.54 -92.71 -0.61 8.27 16 40 H 0.17 1.70 6.39 -2.91 -0.02 1.69 16 41 H 0.19 1.14 4.73 -2.91 -0.01 1.13 16 42 H 0.07 1.05 6.90 -2.39 -0.02 1.03 16 43 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.09 0.14 7.40 -2.39 -0.02 0.12 16 46 H 0.09 0.29 8.10 -2.39 -0.02 0.27 16 47 H 0.09 0.68 4.75 -2.39 -0.01 0.67 16 48 H 0.14 3.16 7.93 -2.91 -0.02 3.14 16 49 H 0.13 3.74 7.64 -2.91 -0.02 3.72 16 Total: -1.00 -86.17 393.89 2.58 -83.60 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.37 Total: 15.25 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 7.52 Total: 23.97 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -7.22 Total: -128.01 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.12 Total: -42.94 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -86.17 2.58 -83.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080800180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.761 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds