Wall clock time and date at job start Wed Apr 1 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.91785 * 2 1 4 4 C 1.55128 * 111.15998 * 236.07042 * 2 1 3 5 5 N 1.47420 * 104.94269 * 205.13573 * 4 2 1 6 6 C 1.36936 * 125.64891 * 204.04407 * 5 4 2 7 7 H 1.08000 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.38818 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99852 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46878 * 90.00152 * 10 8 6 12 12 H 1.48500 * 109.46795 * 209.99550 * 10 8 6 13 13 H 1.48498 * 109.47313 * 329.99774 * 10 8 6 14 14 C 1.47025 * 108.70337 * 23.99937 * 5 4 2 15 15 C 1.54317 * 107.27260 * 358.94652 * 14 5 4 16 16 H 1.09002 * 110.72318 * 96.33988 * 15 14 5 17 17 N 1.46497 * 110.72212 * 219.43801 * 15 14 5 18 18 C 1.34774 * 120.00369 * 271.15763 * 17 15 14 19 19 O 1.21588 * 119.99579 * 359.97438 * 18 17 15 20 20 C 1.47616 * 120.00337 * 179.97438 * 18 17 15 21 21 C 1.40285 * 120.49882 * 179.97438 * 20 18 17 22 22 C 1.37951 * 118.35470 * 180.02562 * 21 20 18 23 23 C 1.39167 * 119.26686 * 0.02562 * 22 21 20 24 24 O 1.35498 * 119.52625 * 180.02562 * 23 22 21 25 25 C 1.42905 * 116.99828 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47079 * 179.97438 * 25 24 23 27 27 C 1.52997 * 117.49712 * 243.62347 * 26 25 24 28 28 C 1.52995 * 117.49779 * 174.99885 * 26 25 24 29 29 N 1.32414 * 120.94697 * 0.26977 * 23 22 21 30 30 C 1.31660 * 121.79759 * 359.43911 * 29 23 22 31 31 H 1.08997 * 109.46619 * 296.10028 * 1 2 3 32 32 H 1.08999 * 109.46946 * 56.09528 * 1 2 3 33 33 H 1.08998 * 109.47229 * 176.09907 * 1 2 3 34 34 H 1.09002 * 110.41702 * 86.20796 * 4 2 1 35 35 H 1.09003 * 110.30012 * 324.00249 * 4 2 1 36 36 H 0.96998 * 120.00164 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.88623 * 239.52566 * 14 5 4 38 38 H 1.09007 * 110.00560 * 118.43215 * 14 5 4 39 39 H 0.97007 * 119.99655 * 91.15367 * 17 15 14 40 40 H 1.08001 * 120.82130 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.36799 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47054 * 299.99612 * 25 24 23 43 43 H 1.09000 * 109.47187 * 59.99667 * 25 24 23 44 44 H 1.09002 * 115.54576 * 29.32703 * 26 25 24 45 45 H 1.09001 * 117.50164 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.50012 * 145.01906 * 27 26 25 47 47 H 1.09003 * 117.49616 * 214.97325 * 28 26 25 48 48 H 1.09000 * 117.50299 * 359.97438 * 28 26 25 49 49 H 1.07997 * 119.68963 * 180.26792 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8075 -1.2003 5 7 3.4298 -1.2476 -0.7706 6 6 4.4679 -1.5730 -1.6022 7 1 4.3396 -1.5175 -2.6731 8 6 5.6851 -1.9741 -1.0688 9 7 5.8415 -2.0412 0.2363 10 14 7.1009 -2.4187 -2.2034 11 1 7.9076 -1.2047 -2.4873 12 1 7.9574 -3.4403 -1.5492 13 1 6.5633 -2.9644 -3.4755 14 6 3.4671 -1.2782 0.6989 15 6 2.0862 -0.8080 1.2022 16 1 1.4450 -1.6614 1.4229 17 7 2.2287 0.0494 2.3815 18 6 2.2498 -0.4969 3.6134 19 8 2.1502 -1.7014 3.7459 20 6 2.3940 0.3670 4.8016 21 6 2.4167 -0.1905 6.0887 22 6 2.5528 0.6579 7.1679 23 6 2.6616 2.0276 6.9470 24 8 2.7960 2.8657 8.0032 25 6 2.9027 4.2612 7.7145 26 6 3.0458 5.0430 9.0219 27 6 1.9305 6.0262 9.3829 28 6 3.2919 6.5496 8.9208 29 7 2.6309 2.5240 5.7198 30 6 2.5081 1.7506 4.6615 31 1 -0.3632 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1733 -2.0838 35 1 1.4552 -1.6696 -1.4053 36 1 6.6919 -2.3219 0.6090 37 1 4.2434 -0.6058 1.0641 38 1 3.6624 -2.2929 1.0459 39 1 2.3079 1.0104 2.2757 40 1 2.3299 -1.2576 6.2311 41 1 2.5738 0.2636 8.1731 42 1 3.7774 4.4369 7.0882 43 1 2.0071 4.5931 7.1893 44 1 3.5293 4.5077 9.8392 45 1 1.0950 6.1164 8.6887 46 1 1.6799 6.1379 10.4377 47 1 3.9370 7.0058 9.6718 48 1 3.3523 6.9839 7.9229 49 1 2.4913 2.1915 3.6758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080994803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:50 Heat of formation + Delta-G solvation = 15.929399 kcal Electronic energy + Delta-G solvation = -29466.284913 eV Core-core repulsion = 25395.440362 eV Total energy + Delta-G solvation = -4070.844551 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.99508 -39.59479 -38.47912 -37.46911 -36.91975 -34.01798 -32.77446 -32.64372 -31.02100 -30.37168 -28.21912 -27.42139 -25.63748 -24.46330 -23.86816 -23.14415 -22.82998 -21.06344 -20.90260 -20.06685 -19.72300 -18.81308 -17.50537 -17.34073 -16.84755 -16.48816 -15.91757 -15.55064 -15.04872 -14.94034 -14.75588 -14.49917 -14.17493 -13.81381 -13.62318 -13.47710 -13.43328 -13.10608 -12.90480 -12.76890 -12.61917 -12.07434 -11.97652 -11.77577 -11.69763 -11.61114 -11.34556 -11.02421 -10.95736 -10.77789 -10.64826 -10.41092 -10.39802 -10.13974 -10.10291 -9.98228 -9.93309 -9.70219 -9.51274 -8.79444 -8.60912 -8.46441 -6.82699 -5.68250 -3.03505 0.61877 1.01289 2.57756 2.98053 3.33918 3.39278 3.42007 3.46372 3.48796 3.80228 3.93473 4.28464 4.42257 4.50006 4.51044 4.64332 4.72161 4.81526 4.88907 5.01328 5.11496 5.12924 5.19371 5.23152 5.30377 5.38448 5.42664 5.43976 5.55537 5.59470 5.64778 5.74269 5.74995 5.92723 5.97512 6.01485 6.13303 6.14931 6.19981 6.34702 6.48451 6.62467 6.73750 6.92048 6.93713 7.50958 7.55745 7.58928 7.83691 7.87633 8.26563 8.50206 9.22641 9.83379 10.48124 11.42388 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002154 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.880495 B =12998.347909 C =13619.728403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.121 3.879 16 H 0.090 0.910 17 N -0.707 5.707 18 C 0.565 3.435 19 O -0.534 6.534 20 C -0.215 4.215 21 C 0.016 3.984 22 C -0.197 4.197 23 C 0.339 3.661 24 O -0.301 6.301 25 C 0.101 3.899 26 C -0.161 4.161 27 C -0.177 4.177 28 C -0.168 4.168 29 N -0.544 5.544 30 C 0.177 3.823 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.394 0.606 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 14.943 16.301 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.047 3.953 15 C 0.016 3.984 16 H 0.108 0.892 17 N -0.357 5.357 18 C 0.351 3.649 19 O -0.411 6.411 20 C -0.221 4.221 21 C -0.009 4.009 22 C -0.217 4.217 23 C 0.160 3.840 24 O -0.207 6.207 25 C 0.026 3.974 26 C -0.179 4.179 27 C -0.214 4.214 28 C -0.205 4.205 29 N -0.268 5.268 30 C 0.020 3.980 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.228 0.772 40 H 0.173 0.827 41 H 0.165 0.835 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.134 0.866 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.049 14.841 16.595 24.426 hybrid contribution 0.926 -0.435 -0.623 1.198 sum -9.124 14.406 15.972 23.364 Atomic orbital electron populations 1.21697 0.94975 1.01847 1.00988 1.22659 0.94847 0.99511 0.96408 0.90443 1.21619 0.87653 0.95008 0.94258 1.44397 1.07985 1.79081 1.01773 1.19042 0.89336 1.38520 0.88945 0.90317 1.24836 0.97915 1.01721 0.96011 1.69967 1.24292 1.53192 1.09121 0.86120 0.82332 0.77792 0.79509 1.21652 1.21690 1.20679 1.21476 0.89964 1.00462 0.83371 1.22541 1.00447 0.92732 0.82669 0.89234 1.45833 1.73743 1.10421 1.05688 1.17795 0.76894 0.87506 0.82711 1.90796 1.49759 1.14367 1.86192 1.20939 1.10817 0.95005 0.95317 1.21559 0.88395 1.01155 0.89822 1.21031 1.09122 0.90231 1.01322 1.20005 0.90007 0.88496 0.85487 1.86174 1.86281 1.18681 1.29595 1.22175 1.02599 0.77124 0.95475 1.22167 1.04791 0.91719 0.99192 1.23113 0.92484 1.03273 1.02487 1.22994 0.99702 0.94483 1.03368 1.67314 1.20368 1.40624 0.98491 1.22621 0.89816 0.89062 0.96541 0.93094 0.92756 0.92543 0.93973 0.96023 0.93724 0.93139 0.93341 0.77174 0.82666 0.83451 0.90822 0.91182 0.86622 0.88472 0.88428 0.88148 0.88318 0.81965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.32 37.16 0.35 -1.42 16 2 C -0.11 -1.85 3.27 -88.35 -0.29 -2.14 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 4 C 0.14 2.83 6.72 -2.41 -0.02 2.81 16 5 N -0.61 -15.42 3.40 -169.93 -0.58 -15.99 16 6 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.17 4.26 5.13 -3.07 -0.02 4.25 16 15 C 0.12 2.26 2.74 -66.10 -0.18 2.08 16 16 H 0.09 1.78 7.51 -51.93 -0.39 1.39 16 17 N -0.71 -11.11 5.07 -53.05 -0.27 -11.38 16 18 C 0.57 9.47 7.77 -12.43 -0.10 9.37 16 19 O -0.53 -10.99 16.10 5.29 0.09 -10.91 16 20 C -0.21 -2.92 5.89 -104.82 -0.62 -3.54 16 21 C 0.02 0.20 9.70 -38.92 -0.38 -0.18 16 22 C -0.20 -2.15 10.02 -39.34 -0.39 -2.54 16 23 C 0.34 4.02 7.49 -16.96 -0.13 3.90 16 24 O -0.30 -3.30 10.10 -18.19 -0.18 -3.48 16 25 C 0.10 0.91 5.58 37.16 0.21 1.12 16 26 C -0.16 -1.16 6.06 -90.62 -0.55 -1.71 16 27 C -0.18 -1.06 10.18 -26.73 -0.27 -1.33 16 28 C -0.17 -0.97 10.25 -26.73 -0.27 -1.24 16 29 N -0.54 -6.63 9.18 -12.96 -0.12 -6.75 16 30 C 0.18 2.10 10.71 -17.14 -0.18 1.92 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16 38 H 0.05 1.40 7.51 -51.92 -0.39 1.01 16 39 H 0.39 4.95 6.59 -40.82 -0.27 4.68 16 40 H 0.16 1.82 7.73 -52.49 -0.41 1.41 16 41 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 44 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 0.57 8.03 -51.93 -0.42 0.15 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.16 1.52 6.41 -52.49 -0.34 1.19 16 LS Contribution 403.86 15.07 6.09 6.09 Total: -1.00 -33.89 403.86 -10.11 -44.00 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.59 Total: 3.68 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.09 Total: 4.42 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.39 Total: -61.12 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.10 Total: -14.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.89 -10.11 -44.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080994803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.929 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds