Wall clock time and date at job start Wed Apr 1 2020 03:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 110.91785 * 2 1 4 4 C 1.55128 * 111.15998 * 236.07042 * 2 1 3 5 5 N 1.47420 * 104.94269 * 205.13573 * 4 2 1 6 6 C 1.36936 * 125.64891 * 204.04407 * 5 4 2 7 7 H 1.08000 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.38818 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31614 * 119.99852 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46878 * 90.00152 * 10 8 6 12 12 H 1.48500 * 109.46795 * 209.99550 * 10 8 6 13 13 H 1.48498 * 109.47313 * 329.99774 * 10 8 6 14 14 C 1.47025 * 108.70337 * 23.99937 * 5 4 2 15 15 C 1.54317 * 107.27260 * 358.94652 * 14 5 4 16 16 H 1.09002 * 110.72318 * 96.33988 * 15 14 5 17 17 N 1.46497 * 110.72212 * 219.43801 * 15 14 5 18 18 C 1.34774 * 120.00369 * 271.15763 * 17 15 14 19 19 O 1.21588 * 119.99579 * 359.97438 * 18 17 15 20 20 C 1.47616 * 120.00337 * 179.97438 * 18 17 15 21 21 C 1.40285 * 120.49882 * 179.97438 * 20 18 17 22 22 C 1.37951 * 118.35470 * 180.02562 * 21 20 18 23 23 C 1.39167 * 119.26686 * 0.02562 * 22 21 20 24 24 O 1.35498 * 119.52625 * 180.02562 * 23 22 21 25 25 C 1.42905 * 116.99828 * 180.02562 * 24 23 22 26 26 C 1.53002 * 109.47079 * 179.97438 * 25 24 23 27 27 C 1.52997 * 117.49712 * 243.62347 * 26 25 24 28 28 C 1.52995 * 117.49779 * 174.99885 * 26 25 24 29 29 N 1.32414 * 120.94697 * 0.26977 * 23 22 21 30 30 C 1.31660 * 121.79759 * 359.43911 * 29 23 22 31 31 H 1.08997 * 109.46619 * 296.10028 * 1 2 3 32 32 H 1.08999 * 109.46946 * 56.09528 * 1 2 3 33 33 H 1.08998 * 109.47229 * 176.09907 * 1 2 3 34 34 H 1.09002 * 110.41702 * 86.20796 * 4 2 1 35 35 H 1.09003 * 110.30012 * 324.00249 * 4 2 1 36 36 H 0.96998 * 120.00164 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.88623 * 239.52566 * 14 5 4 38 38 H 1.09007 * 110.00560 * 118.43215 * 14 5 4 39 39 H 0.97007 * 119.99655 * 91.15367 * 17 15 14 40 40 H 1.08001 * 120.82130 * 0.02562 * 21 20 18 41 41 H 1.08000 * 120.36799 * 179.97438 * 22 21 20 42 42 H 1.09004 * 109.47054 * 299.99612 * 25 24 23 43 43 H 1.09000 * 109.47187 * 59.99667 * 25 24 23 44 44 H 1.09002 * 115.54576 * 29.32703 * 26 25 24 45 45 H 1.09001 * 117.50164 * 359.97438 * 27 26 25 46 46 H 1.08996 * 117.50012 * 145.01906 * 27 26 25 47 47 H 1.09003 * 117.49616 * 214.97325 * 28 26 25 48 48 H 1.09000 * 117.50299 * 359.97438 * 28 26 25 49 49 H 1.07997 * 119.68963 * 180.26792 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0901 -0.8075 -1.2003 5 7 3.4298 -1.2476 -0.7706 6 6 4.4679 -1.5730 -1.6022 7 1 4.3396 -1.5175 -2.6731 8 6 5.6851 -1.9741 -1.0688 9 7 5.8415 -2.0412 0.2363 10 14 7.1009 -2.4187 -2.2034 11 1 7.9076 -1.2047 -2.4873 12 1 7.9574 -3.4403 -1.5492 13 1 6.5633 -2.9644 -3.4755 14 6 3.4671 -1.2782 0.6989 15 6 2.0862 -0.8080 1.2022 16 1 1.4450 -1.6614 1.4229 17 7 2.2287 0.0494 2.3815 18 6 2.2498 -0.4969 3.6134 19 8 2.1502 -1.7014 3.7459 20 6 2.3940 0.3670 4.8016 21 6 2.4167 -0.1905 6.0887 22 6 2.5528 0.6579 7.1679 23 6 2.6616 2.0276 6.9470 24 8 2.7960 2.8657 8.0032 25 6 2.9027 4.2612 7.7145 26 6 3.0458 5.0430 9.0219 27 6 1.9305 6.0262 9.3829 28 6 3.2919 6.5496 8.9208 29 7 2.6309 2.5240 5.7198 30 6 2.5081 1.7506 4.6615 31 1 -0.3632 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1643 -0.1733 -2.0838 35 1 1.4552 -1.6696 -1.4053 36 1 6.6919 -2.3219 0.6090 37 1 4.2434 -0.6058 1.0641 38 1 3.6624 -2.2929 1.0459 39 1 2.3079 1.0104 2.2757 40 1 2.3299 -1.2576 6.2311 41 1 2.5738 0.2636 8.1731 42 1 3.7774 4.4369 7.0882 43 1 2.0071 4.5931 7.1893 44 1 3.5293 4.5077 9.8392 45 1 1.0950 6.1164 8.6887 46 1 1.6799 6.1379 10.4377 47 1 3.9370 7.0058 9.6718 48 1 3.3523 6.9839 7.9229 49 1 2.4913 2.1915 3.6758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080994803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:49 Heat of formation + Delta-G solvation = -6.899393 kcal Electronic energy + Delta-G solvation = -29467.274843 eV Core-core repulsion = 25395.440362 eV Total energy + Delta-G solvation = -4071.834482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.98377 -40.86053 -39.50087 -38.83512 -37.64826 -35.69806 -34.38148 -33.65983 -32.25316 -31.97595 -29.55465 -28.52896 -27.34873 -25.75585 -25.04498 -24.35182 -23.27710 -22.45123 -21.71171 -21.53264 -21.20981 -19.69830 -18.90290 -18.69790 -18.27075 -17.35583 -17.13015 -16.89679 -16.38554 -16.06838 -15.90704 -15.59437 -15.56517 -15.12974 -14.81948 -14.62511 -14.40490 -14.32386 -14.17987 -14.05653 -13.78343 -13.70086 -13.32237 -13.02630 -12.87953 -12.64535 -12.57512 -12.37859 -12.26456 -12.20711 -12.05394 -11.85110 -11.65428 -11.46890 -11.43592 -11.26316 -11.10526 -10.96143 -10.75192 -10.68811 -10.09547 -9.63928 -8.91936 -7.84573 -5.22133 -0.39839 0.08365 1.44231 1.46895 1.55618 1.77202 1.78022 2.09461 2.49414 2.72754 2.83285 3.05898 3.33663 3.52799 3.67035 3.69538 3.73094 3.79784 3.90364 3.94757 3.98602 4.06609 4.12024 4.17044 4.22509 4.44300 4.50251 4.55035 4.57286 4.62717 4.72335 4.74203 4.77500 4.90417 4.99712 5.01616 5.07827 5.10636 5.12097 5.20298 5.22797 5.27740 5.30675 5.45619 5.51654 5.62583 5.79030 6.06963 6.17133 6.51293 6.58319 7.06597 7.20425 7.76284 8.39891 9.24532 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002154 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.880495 B =12998.347909 C =13619.728403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.095 0.905 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.239 4.239 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.980 3.020 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.266 1.266 14 C 0.188 3.812 15 C 0.137 3.863 16 H 0.077 0.923 17 N -0.695 5.695 18 C 0.565 3.435 19 O -0.580 6.580 20 C -0.232 4.232 21 C 0.012 3.988 22 C -0.190 4.190 23 C 0.335 3.665 24 O -0.304 6.304 25 C 0.100 3.900 26 C -0.174 4.174 27 C -0.174 4.174 28 C -0.161 4.161 29 N -0.550 5.550 30 C 0.186 3.814 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.244 0.756 37 H 0.018 0.982 38 H -0.010 1.010 39 H 0.412 0.588 40 H 0.156 0.844 41 H 0.172 0.828 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.102 0.898 49 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.580 17.468 16.253 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.113 0.887 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.368 4.368 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.602 5.602 10 Si 0.808 3.192 11 H -0.210 1.210 12 H -0.226 1.226 13 H -0.191 1.191 14 C 0.061 3.939 15 C 0.031 3.969 16 H 0.095 0.905 17 N -0.346 5.346 18 C 0.353 3.647 19 O -0.461 6.461 20 C -0.238 4.238 21 C -0.013 4.013 22 C -0.211 4.211 23 C 0.156 3.844 24 O -0.210 6.210 25 C 0.025 3.975 26 C -0.193 4.193 27 C -0.211 4.211 28 C -0.198 4.198 29 N -0.274 5.274 30 C 0.029 3.971 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.036 0.964 38 H 0.008 0.992 39 H 0.250 0.750 40 H 0.173 0.827 41 H 0.190 0.810 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.130 0.870 48 H 0.120 0.880 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.384 17.429 16.530 26.582 hybrid contribution 1.312 -1.188 -0.565 1.858 sum -10.072 16.242 15.965 24.902 Atomic orbital electron populations 1.21656 0.91628 1.02311 1.03083 1.22590 0.97310 0.98996 0.92437 0.88718 1.21901 0.85201 0.95800 0.96418 1.44715 1.09627 1.79079 1.01971 1.19510 0.90110 1.37334 0.89867 0.89330 1.25736 1.00769 1.02532 0.97425 1.70233 1.24238 1.54696 1.11024 0.85048 0.78898 0.77262 0.77959 1.20970 1.22633 1.19062 1.21111 0.92667 0.96598 0.83519 1.22101 0.96554 0.93636 0.84657 0.90534 1.45630 1.73300 1.11039 1.04668 1.18282 0.75551 0.87254 0.83611 1.90771 1.51930 1.16542 1.86878 1.20721 1.13391 0.95392 0.94295 1.21658 0.88283 1.01514 0.89878 1.21222 1.08062 0.89760 1.02013 1.20272 0.89320 0.89072 0.85685 1.86185 1.85868 1.19608 1.29342 1.22301 1.02376 0.76211 0.96567 1.22150 1.06358 0.92362 0.98393 1.23198 0.92487 1.02220 1.03171 1.23096 0.99648 0.93084 1.03948 1.67389 1.20766 1.40567 0.98679 1.22904 0.88474 0.88210 0.97546 0.91277 0.90294 0.93038 0.92570 0.95683 0.94721 0.96395 0.99168 0.75041 0.82678 0.81018 0.91326 0.91096 0.86755 0.88340 0.87460 0.86989 0.87972 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.32 71.98 0.67 -2.21 16 2 C -0.09 -2.84 3.27 -9.32 -0.03 -2.87 16 3 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 4 C 0.13 5.13 6.72 86.93 0.58 5.72 16 5 N -0.63 -32.55 3.40 -691.55 -2.35 -34.90 16 6 C -0.24 -13.56 10.28 84.04 0.86 -12.69 16 7 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 8 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16 9 N -0.95 -59.97 10.31 21.65 0.22 -59.75 16 10 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 C 0.19 9.70 5.13 86.73 0.44 10.14 16 15 C 0.14 5.17 2.74 46.18 0.13 5.29 16 16 H 0.08 3.13 7.51 -2.39 -0.02 3.11 16 17 N -0.70 -21.72 5.07 -440.00 -2.23 -23.95 16 18 C 0.56 19.29 7.77 86.72 0.67 19.97 16 19 O -0.58 -25.05 16.10 -3.99 -0.06 -25.12 16 20 C -0.23 -6.24 5.89 -19.99 -0.12 -6.36 16 21 C 0.01 0.30 9.70 22.70 0.22 0.52 16 22 C -0.19 -3.93 10.02 22.42 0.22 -3.71 16 23 C 0.33 7.50 7.49 84.83 0.64 8.14 16 24 O -0.30 -6.25 10.10 -87.99 -0.89 -7.14 16 25 C 0.10 1.68 5.58 71.98 0.40 2.08 16 26 C -0.17 -2.27 6.06 -10.80 -0.07 -2.33 16 27 C -0.17 -1.76 10.18 30.59 0.31 -1.45 16 28 C -0.16 -1.54 10.25 30.59 0.31 -1.23 16 29 N -0.55 -12.58 9.18 -307.81 -2.82 -15.41 16 30 C 0.19 4.16 10.71 85.03 0.91 5.07 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 0.98 7.99 -2.39 -0.02 0.96 16 36 H 0.24 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.02 1.02 7.27 -2.39 -0.02 1.01 16 38 H -0.01 -0.62 7.51 -2.38 -0.02 -0.64 16 39 H 0.41 9.70 6.59 -92.70 -0.61 9.09 16 40 H 0.16 3.73 7.73 -2.91 -0.02 3.70 16 41 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.07 1.21 8.10 -2.38 -0.02 1.19 16 43 H 0.07 1.16 7.83 -2.39 -0.02 1.15 16 44 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.10 0.97 8.03 -2.39 -0.02 0.95 16 46 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 48 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.19 3.07 6.41 -2.91 -0.02 3.05 16 Total: -1.00 -77.78 403.86 0.87 -76.90 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.35 Total: 20.15 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 6.63 Total: 20.32 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -7.18 Total: -134.00 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.95 Total: -32.25 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -77.78 0.87 -76.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080994803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.005 kcal (2) G-P(sol) polarization free energy of solvation -77.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds