Wall clock time and date at job start Wed Apr 1 2020 03:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 300.00154 * 10 8 6 13 13 H 1.48498 * 109.47018 * 60.00200 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.09002 * 111.00120 * 81.06703 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21512 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.48162 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.39387 * 120.66655 * 359.97438 * 20 18 17 22 22 C 1.38866 * 118.61196 * 179.97438 * 21 20 18 23 23 O 1.35690 * 119.69676 * 180.17570 * 22 21 20 24 24 N 1.31836 * 120.61054 * 0.15645 * 22 21 20 25 25 C 1.32739 * 122.68368 * 0.03627 * 24 22 21 26 26 C 1.37454 * 120.23732 * 359.38927 * 25 24 22 27 27 C 1.50501 * 122.88277 * 181.02258 * 26 25 24 28 28 C 1.52769 * 110.56473 * 342.34015 * 27 26 25 29 29 C 1.53320 * 108.34376 * 50.90060 * 28 27 26 30 30 C 1.50757 * 117.46131 * 179.25862 * 25 24 22 31 31 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 32 32 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 33 33 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 34 34 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 35 35 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 36 36 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 38 38 H 1.08999 * 110.36672 * 265.51958 * 14 5 4 39 39 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 40 40 H 1.08001 * 120.69728 * 359.92270 * 21 20 18 41 41 H 0.96699 * 113.99836 * 89.99895 * 23 22 21 42 42 H 1.09004 * 109.25271 * 102.61701 * 27 26 25 43 43 H 1.08997 * 109.25779 * 222.05753 * 27 26 25 44 44 H 1.08997 * 109.68382 * 170.61609 * 28 27 26 45 45 H 1.09003 * 109.68538 * 291.15046 * 28 27 26 46 46 H 1.09001 * 109.64227 * 49.95570 * 29 28 27 47 47 H 1.08999 * 109.63752 * 170.36671 * 29 28 27 48 48 H 1.09006 * 109.25285 * 282.45905 * 30 25 24 49 49 H 1.09002 * 109.25466 * 41.87595 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 7.2238 -4.7734 -1.1338 12 1 5.2849 -5.2999 -2.4922 13 1 6.7273 -3.4487 -3.1028 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4469 -1.6529 1.4383 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2815 -1.6766 3.7549 20 6 2.4510 0.4065 4.8057 21 6 2.4874 1.7928 4.6657 22 6 2.6190 2.5732 5.8067 23 8 2.6532 3.9252 5.6963 24 7 2.7105 2.0127 6.9965 25 6 2.6839 0.6974 7.1731 26 6 2.5443 -0.1432 6.0946 27 6 2.4844 -1.6410 6.2283 28 6 3.0245 -2.0804 7.5881 29 6 2.3180 -1.2619 8.6752 30 6 2.8148 0.1826 8.5840 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3847 -0.0961 -1.9951 35 1 1.3215 -1.4701 -1.5824 36 1 6.1463 -3.3199 0.7355 37 1 3.7993 -2.1364 1.2216 38 1 4.1929 -0.4410 0.8028 39 1 2.2418 1.0362 2.2799 40 1 2.4157 2.2505 3.6901 41 1 1.7840 4.3460 5.7458 42 1 1.4498 -1.9697 6.1292 43 1 3.0829 -2.0966 5.4395 44 1 2.8232 -3.1411 7.7378 45 1 4.0987 -1.9006 7.6321 46 1 1.2401 -1.2965 8.5175 47 1 2.5579 -1.6718 9.6563 48 1 3.8597 0.2341 8.8900 49 1 2.2151 0.8030 9.2501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081059722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:20 Heat of formation + Delta-G solvation = -19.463525 kcal Electronic energy + Delta-G solvation = -30947.490540 eV Core-core repulsion = 26875.111237 eV Total energy + Delta-G solvation = -4072.379303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.24216 -39.41214 -38.16678 -37.48677 -35.79513 -34.08887 -33.41254 -32.66751 -30.40247 -30.09238 -29.72185 -27.84242 -25.72782 -24.99735 -23.77800 -23.46236 -22.99449 -21.02100 -20.28823 -20.02078 -19.50331 -18.62985 -17.33653 -16.97572 -16.80306 -16.02613 -15.77714 -15.39286 -15.02057 -14.73848 -14.45633 -14.32300 -13.96268 -13.81488 -13.74104 -13.36541 -13.19547 -12.97749 -12.83236 -12.53582 -12.49120 -12.23442 -12.01885 -11.76873 -11.73036 -11.27072 -11.13545 -11.01637 -10.95701 -10.78482 -10.77071 -10.66744 -10.42231 -10.08412 -10.02779 -9.87177 -9.79643 -9.74689 -9.14866 -8.77740 -8.66023 -8.53746 -6.85606 -5.64050 -3.08101 0.57689 0.79674 2.86953 3.22983 3.32401 3.41435 3.45352 3.47277 3.64831 4.20248 4.46429 4.51263 4.61485 4.69902 4.79946 4.81515 4.94123 5.05456 5.21641 5.24975 5.34130 5.37869 5.40311 5.46206 5.51945 5.54294 5.64822 5.70223 5.76526 5.79899 5.89350 5.94118 5.97904 6.08437 6.09366 6.17642 6.23599 6.24264 6.31829 6.41158 6.52337 6.62733 6.73440 6.89016 7.24358 7.40400 7.59843 7.69635 7.72874 7.88735 8.34828 8.41365 9.20453 9.81821 10.44494 11.38759 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.003108 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.142664 B = 9005.701187 C =10236.480547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.915 3.085 11 H -0.290 1.290 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.149 3.851 15 C 0.120 3.880 16 H 0.093 0.907 17 N -0.704 5.704 18 C 0.554 3.446 19 O -0.512 6.512 20 C -0.070 4.070 21 C -0.157 4.157 22 C 0.305 3.695 23 O -0.479 6.479 24 N -0.495 5.495 25 C 0.150 3.850 26 C -0.075 4.075 27 C -0.085 4.085 28 C -0.126 4.126 29 C -0.120 4.120 30 C -0.066 4.066 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.028 0.972 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.013 0.987 39 H 0.393 0.607 40 H 0.144 0.856 41 H 0.398 0.602 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 9.777 14.465 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.215 1.215 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.023 3.977 15 C 0.015 3.985 16 H 0.111 0.889 17 N -0.354 5.354 18 C 0.339 3.661 19 O -0.388 6.388 20 C -0.081 4.081 21 C -0.179 4.179 22 C 0.124 3.876 23 O -0.286 6.286 24 N -0.214 5.214 25 C 0.014 3.986 26 C -0.078 4.078 27 C -0.122 4.122 28 C -0.163 4.163 29 C -0.158 4.158 30 C -0.103 4.103 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.132 0.868 38 H 0.031 0.969 39 H 0.228 0.772 40 H 0.162 0.838 41 H 0.255 0.745 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.703 9.249 15.161 20.237 hybrid contribution 0.121 0.006 -1.453 1.458 sum -9.582 9.255 13.708 19.115 Atomic orbital electron populations 1.21744 0.94860 1.01986 1.00914 1.22432 0.95257 0.99206 0.96220 0.90848 1.21336 0.90337 0.93197 0.93613 1.44380 1.30972 1.50464 1.07072 1.19012 1.06262 1.17470 0.92925 0.90372 1.24815 0.98704 1.00510 0.96389 1.69784 1.29964 1.46022 1.10781 0.86150 0.79786 0.80610 0.78916 1.21539 1.21074 1.21222 1.22242 0.89085 1.01244 0.85130 1.22764 1.01360 0.92211 0.82142 0.88924 1.45821 1.73425 1.10114 1.06067 1.17975 0.77698 0.87671 0.82711 1.90762 1.48697 1.13994 1.85327 1.20409 1.00257 0.93016 0.94443 1.22262 1.02126 0.93210 1.00260 1.18765 0.96773 0.84514 0.87541 1.84832 1.34910 1.14598 1.94238 1.66811 1.13430 1.13993 1.27215 1.20758 0.95528 0.86447 0.95837 1.20655 0.97583 0.98368 0.91148 1.20811 1.03590 0.89055 0.98769 1.21692 1.00366 1.00004 0.94281 1.21666 1.00684 0.93906 0.99573 1.20446 1.02942 0.96444 0.90496 0.93140 0.92775 0.92379 0.95821 0.95399 0.93577 0.86829 0.96945 0.77209 0.83818 0.74459 0.89857 0.86769 0.90875 0.91523 0.91375 0.90855 0.89498 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.17 37.16 0.34 -1.44 16 2 C -0.11 -1.80 3.15 -88.78 -0.28 -2.08 16 3 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 4 C 0.14 2.86 6.85 -3.06 -0.02 2.84 16 5 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 6 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -27.27 10.09 55.49 0.56 -26.72 16 10 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.15 3.64 5.58 -2.53 -0.01 3.63 16 15 C 0.12 2.24 2.76 -65.79 -0.18 2.06 16 16 H 0.09 1.89 7.64 -51.93 -0.40 1.50 16 17 N -0.70 -10.91 5.19 -52.57 -0.27 -11.19 16 18 C 0.55 9.16 7.74 -12.18 -0.09 9.07 16 19 O -0.51 -10.05 12.95 5.36 0.07 -9.98 16 20 C -0.07 -0.99 5.91 -104.57 -0.62 -1.61 16 21 C -0.16 -1.87 9.55 -38.92 -0.37 -2.25 16 22 C 0.30 3.73 7.75 -17.32 -0.13 3.60 16 23 O -0.48 -4.87 13.56 -18.77 -0.25 -5.13 16 24 N -0.49 -6.53 10.18 -9.62 -0.10 -6.62 16 25 C 0.15 1.86 6.62 -82.46 -0.55 1.32 16 26 C -0.07 -1.00 5.77 -104.18 -0.60 -1.61 16 27 C -0.09 -1.11 4.31 -28.10 -0.12 -1.23 16 28 C -0.13 -1.27 5.98 -26.68 -0.16 -1.43 16 29 C -0.12 -0.99 5.99 -26.55 -0.16 -1.15 16 30 C -0.07 -0.61 5.92 -27.84 -0.16 -0.78 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.03 0.56 7.78 -51.93 -0.40 0.15 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.11 3.26 5.87 -51.93 -0.31 2.96 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.39 4.89 6.63 -40.82 -0.27 4.62 16 40 H 0.14 1.37 6.51 -52.49 -0.34 1.03 16 41 H 0.40 1.91 9.06 45.56 0.41 2.32 16 42 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 43 H 0.11 1.83 5.88 -51.93 -0.31 1.53 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 46 H 0.07 0.56 8.10 -51.93 -0.42 0.13 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -34.07 386.09 -9.79 -43.86 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.64 Total: 6.61 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -3.38 Total: 2.06 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.39 Total: -60.49 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.19 Total: -15.10 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.07 -9.79 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081059722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.395 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds