Wall clock time and date at job start Wed Apr 1 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.63983 * 2 1 4 4 C 1.54337 * 110.99773 * 236.92188 * 2 1 3 5 5 N 1.47020 * 107.26210 * 219.60002 * 4 2 1 6 6 C 1.36945 * 125.64525 * 178.85184 * 5 4 2 7 7 H 1.07997 * 119.99756 * 359.71717 * 6 5 4 8 8 C 1.38805 * 119.99878 * 179.71622 * 6 5 4 9 9 N 1.31624 * 120.00257 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99929 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47187 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47141 * 300.00154 * 10 8 6 13 13 H 1.48498 * 109.47018 * 60.00200 * 10 8 6 14 14 C 1.47420 * 108.70626 * 358.58837 * 5 4 2 15 15 C 1.54914 * 104.83159 * 24.35323 * 14 5 4 16 16 H 1.09002 * 111.00120 * 81.06703 * 15 14 5 17 17 N 1.46492 * 111.00284 * 204.91262 * 15 14 5 18 18 C 1.34779 * 120.00542 * 273.54715 * 17 15 14 19 19 O 1.21512 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.48162 * 120.00006 * 180.02562 * 18 17 15 21 21 C 1.39387 * 120.66655 * 359.97438 * 20 18 17 22 22 C 1.38866 * 118.61196 * 179.97438 * 21 20 18 23 23 O 1.35690 * 119.69676 * 180.17570 * 22 21 20 24 24 N 1.31836 * 120.61054 * 0.15645 * 22 21 20 25 25 C 1.32739 * 122.68368 * 0.03627 * 24 22 21 26 26 C 1.37454 * 120.23732 * 359.38927 * 25 24 22 27 27 C 1.50501 * 122.88277 * 181.02258 * 26 25 24 28 28 C 1.52769 * 110.56473 * 342.34015 * 27 26 25 29 29 C 1.53320 * 108.34376 * 50.90060 * 28 27 26 30 30 C 1.50757 * 117.46131 * 179.25862 * 25 24 22 31 31 H 1.09000 * 109.47012 * 296.85820 * 1 2 3 32 32 H 1.09000 * 109.47235 * 56.85241 * 1 2 3 33 33 H 1.08999 * 109.47449 * 176.86112 * 1 2 3 34 34 H 1.09001 * 109.98748 * 100.12718 * 4 2 1 35 35 H 1.09001 * 109.78230 * 338.96187 * 4 2 1 36 36 H 0.97001 * 119.99885 * 179.97438 * 9 8 6 37 37 H 1.08999 * 110.36700 * 143.19620 * 14 5 4 38 38 H 1.08999 * 110.36672 * 265.51958 * 14 5 4 39 39 H 0.97002 * 119.99551 * 93.55061 * 17 15 14 40 40 H 1.08001 * 120.69728 * 359.92270 * 21 20 18 41 41 H 0.96699 * 113.99836 * 89.99895 * 23 22 21 42 42 H 1.09004 * 109.25271 * 102.61701 * 27 26 25 43 43 H 1.08997 * 109.25779 * 222.05753 * 27 26 25 44 44 H 1.08997 * 109.68382 * 170.61609 * 28 27 26 45 45 H 1.09003 * 109.68538 * 291.15046 * 28 27 26 46 46 H 1.09001 * 109.64227 * 49.95570 * 29 28 27 47 47 H 1.08999 * 109.63752 * 170.36671 * 29 28 27 48 48 H 1.09006 * 109.25285 * 282.45905 * 30 25 24 49 49 H 1.09002 * 109.25466 * 41.87595 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2074 5 7 3.2493 -1.5470 -0.7354 6 6 4.0124 -2.3919 -1.4965 7 1 3.7712 -2.5469 -2.5378 8 6 5.0957 -3.0490 -0.9298 9 7 5.3894 -2.8604 0.3394 10 14 6.1362 -4.2020 -1.9678 11 1 7.2238 -4.7734 -1.1338 12 1 5.2849 -5.2999 -2.4922 13 1 6.7273 -3.4487 -3.1028 14 6 3.4652 -1.2447 0.6912 15 6 2.0789 -0.7934 1.2151 16 1 1.4469 -1.6529 1.4383 17 7 2.2176 0.0726 2.3885 18 6 2.3114 -0.4695 3.6189 19 8 2.2815 -1.6766 3.7549 20 6 2.4510 0.4065 4.8057 21 6 2.4874 1.7928 4.6657 22 6 2.6190 2.5732 5.8067 23 8 2.6532 3.9252 5.6963 24 7 2.7105 2.0127 6.9965 25 6 2.6839 0.6974 7.1731 26 6 2.5443 -0.1432 6.0946 27 6 2.4844 -1.6410 6.2283 28 6 3.0245 -2.0804 7.5881 29 6 2.3180 -1.2619 8.6752 30 6 2.8148 0.1826 8.5840 31 1 -0.3633 0.4643 0.9168 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3634 -1.0261 -0.0563 34 1 2.3847 -0.0961 -1.9951 35 1 1.3215 -1.4701 -1.5824 36 1 6.1463 -3.3199 0.7355 37 1 3.7993 -2.1364 1.2216 38 1 4.1929 -0.4410 0.8028 39 1 2.2418 1.0362 2.2799 40 1 2.4157 2.2505 3.6901 41 1 1.7840 4.3460 5.7458 42 1 1.4498 -1.9697 6.1292 43 1 3.0829 -2.0966 5.4395 44 1 2.8232 -3.1411 7.7378 45 1 4.0987 -1.9006 7.6321 46 1 1.2401 -1.2965 8.5175 47 1 2.5579 -1.6718 9.6563 48 1 3.8597 0.2341 8.8900 49 1 2.2151 0.8030 9.2501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081059722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:18 Heat of formation + Delta-G solvation = -45.392174 kcal Electronic energy + Delta-G solvation = -30948.614890 eV Core-core repulsion = 26875.111237 eV Total energy + Delta-G solvation = -4073.503654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.27306 -40.74473 -39.29400 -38.77747 -36.66422 -35.72666 -34.65502 -34.12092 -32.18771 -31.04204 -30.63506 -29.48380 -27.45131 -26.22589 -25.14320 -24.38371 -24.13083 -22.44268 -21.80027 -21.27153 -20.65159 -19.59606 -18.95629 -18.31489 -18.03802 -17.18748 -16.97432 -16.87840 -16.36441 -16.08994 -15.64836 -15.59888 -15.22584 -14.91828 -14.77461 -14.53917 -14.42283 -14.37446 -14.19810 -13.89030 -13.77298 -13.41485 -13.32411 -13.04217 -12.83883 -12.82723 -12.59560 -12.59125 -12.27653 -12.07357 -11.90744 -11.83777 -11.77385 -11.65657 -11.56860 -11.42487 -11.19581 -10.90714 -10.77457 -10.27425 -10.08063 -9.69005 -8.92156 -7.78662 -5.25595 -0.48588 -0.14267 1.43748 1.47714 1.54199 1.70061 1.94082 2.41270 2.48203 2.61343 3.28620 3.31018 3.42347 3.62917 3.65706 3.72442 3.80567 3.97232 4.00660 4.03995 4.07295 4.13628 4.35846 4.41027 4.46871 4.50409 4.59772 4.61674 4.63635 4.75299 4.77059 4.87970 5.00454 5.01682 5.03287 5.07833 5.13374 5.15570 5.24083 5.26488 5.36694 5.43372 5.43771 5.48083 5.52731 5.59650 5.78573 6.26317 6.44388 6.56771 6.79914 7.04672 7.12493 7.75136 8.37190 9.21524 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.003108 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.142664 B = 9005.701187 C =10236.480547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.097 0.903 4 C 0.133 3.867 5 N -0.626 5.626 6 C -0.242 4.242 7 H 0.086 0.914 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.981 3.019 11 H -0.296 1.296 12 H -0.275 1.275 13 H -0.275 1.275 14 C 0.157 3.843 15 C 0.139 3.861 16 H 0.073 0.927 17 N -0.692 5.692 18 C 0.551 3.449 19 O -0.550 6.550 20 C -0.085 4.085 21 C -0.150 4.150 22 C 0.308 3.692 23 O -0.483 6.483 24 N -0.507 5.507 25 C 0.150 3.850 26 C -0.090 4.090 27 C -0.080 4.080 28 C -0.124 4.124 29 C -0.111 4.111 30 C -0.065 4.065 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.244 0.756 37 H 0.064 0.936 38 H -0.013 1.013 39 H 0.412 0.588 40 H 0.169 0.831 41 H 0.423 0.577 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 11.917 14.971 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.115 0.885 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.371 4.371 7 H 0.104 0.896 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.809 3.191 11 H -0.223 1.223 12 H -0.201 1.201 13 H -0.201 1.201 14 C 0.030 3.970 15 C 0.033 3.967 16 H 0.091 0.909 17 N -0.344 5.344 18 C 0.338 3.662 19 O -0.429 6.429 20 C -0.096 4.096 21 C -0.172 4.172 22 C 0.127 3.873 23 O -0.293 6.293 24 N -0.227 5.227 25 C 0.014 3.986 26 C -0.093 4.093 27 C -0.117 4.117 28 C -0.161 4.161 29 C -0.149 4.149 30 C -0.103 4.103 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.005 0.995 39 H 0.249 0.751 40 H 0.186 0.814 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.242 11.456 15.647 22.416 hybrid contribution 0.575 -0.590 -1.630 1.827 sum -10.667 10.867 14.016 20.696 Atomic orbital electron populations 1.21699 0.91695 1.02135 1.03159 1.22383 0.97615 0.99038 0.92248 0.88494 1.21611 0.88687 0.93343 0.95604 1.44684 1.32160 1.50885 1.07544 1.19459 1.06478 1.17525 0.93602 0.89599 1.25704 1.00347 1.02515 0.97537 1.70109 1.30114 1.47121 1.12476 0.85109 0.77883 0.78722 0.77379 1.22258 1.20080 1.20055 1.21886 0.91862 0.98285 0.84967 1.22221 0.97399 0.92937 0.84150 0.90906 1.45594 1.73108 1.10705 1.04945 1.18443 0.76617 0.87553 0.83570 1.90762 1.50237 1.15924 1.85987 1.20253 1.02129 0.93677 0.93513 1.22425 1.01165 0.92075 1.01528 1.18896 0.95726 0.85360 0.87300 1.84785 1.37059 1.13337 1.94110 1.66930 1.13870 1.14191 1.27723 1.21185 0.94411 0.86155 0.96835 1.20784 0.98441 0.98558 0.91538 1.20650 1.02614 0.89083 0.99397 1.21688 1.00229 1.00924 0.93288 1.21641 1.00474 0.92880 0.99907 1.20573 1.03746 0.97141 0.88801 0.91087 0.90266 0.93390 0.94922 0.94926 0.94619 0.91792 0.99513 0.75055 0.81404 0.71600 0.90458 0.90625 0.90046 0.91904 0.91110 0.88208 0.88753 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.17 71.98 0.66 -2.29 16 2 C -0.09 -2.85 3.15 -9.60 -0.03 -2.88 16 3 H 0.10 2.54 8.00 -2.39 -0.02 2.52 16 4 C 0.13 5.26 6.85 86.73 0.59 5.85 16 5 N -0.63 -32.80 3.39 -691.97 -2.35 -35.15 16 6 C -0.24 -13.83 10.27 84.03 0.86 -12.97 16 7 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.95 -59.46 10.09 21.65 0.22 -59.24 16 10 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 C 0.16 8.04 5.58 86.86 0.48 8.52 16 15 C 0.14 5.28 2.76 46.38 0.13 5.41 16 16 H 0.07 3.09 7.64 -2.39 -0.02 3.07 16 17 N -0.69 -21.46 5.19 -438.54 -2.27 -23.73 16 18 C 0.55 18.91 7.74 86.88 0.67 19.58 16 19 O -0.55 -23.26 12.95 -3.75 -0.05 -23.31 16 20 C -0.08 -2.40 5.91 -19.83 -0.12 -2.52 16 21 C -0.15 -3.36 9.55 22.70 0.22 -3.15 16 22 C 0.31 6.92 7.75 84.84 0.66 7.57 16 23 O -0.48 -8.45 13.56 -90.09 -1.22 -9.67 16 24 N -0.51 -12.49 10.18 -297.40 -3.03 -15.52 16 25 C 0.15 3.56 6.62 42.25 0.28 3.84 16 26 C -0.09 -2.46 5.77 -19.58 -0.11 -2.57 16 27 C -0.08 -2.21 4.31 29.71 0.13 -2.08 16 28 C -0.12 -2.49 5.98 30.62 0.18 -2.31 16 29 C -0.11 -1.63 5.99 30.71 0.18 -1.45 16 30 C -0.07 -1.09 5.92 29.88 0.18 -0.92 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.03 1.27 7.78 -2.39 -0.02 1.25 16 36 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.06 3.95 5.87 -2.39 -0.01 3.94 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.41 9.55 6.63 -92.71 -0.61 8.94 16 40 H 0.17 2.77 6.51 -2.91 -0.02 2.75 16 41 H 0.42 2.67 9.06 -74.06 -0.67 2.00 16 42 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 43 H 0.08 2.68 5.88 -2.39 -0.01 2.67 16 44 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 46 H 0.07 1.02 8.10 -2.39 -0.02 1.01 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 49 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -79.26 386.09 -1.53 -80.79 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.29 Total: 22.77 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.43 Total: 14.10 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -7.43 Total: -133.65 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.27 Total: -32.98 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.26 -1.53 -80.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081059722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.400 kcal (2) G-P(sol) polarization free energy of solvation -79.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds