Wall clock time and date at job start Wed Apr 1 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46881 * 90.00394 * 10 8 6 12 12 H 1.48499 * 109.47149 * 210.00031 * 10 8 6 13 13 H 1.48496 * 109.47418 * 330.00294 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34779 * 119.99713 * 180.02562 * 18 17 15 20 20 O 1.21507 * 120.00333 * 359.97438 * 19 18 17 21 21 C 1.48171 * 119.99666 * 179.97438 * 19 18 17 22 22 C 1.39617 * 120.89173 * 0.02562 * 21 19 18 23 23 C 1.38844 * 118.94858 * 179.97438 * 22 21 19 24 24 O 1.35682 * 119.62156 * 179.97438 * 23 22 21 25 25 N 1.32205 * 120.75479 * 0.02562 * 23 22 21 26 26 C 1.31878 * 121.97160 * 359.97186 * 25 23 22 27 27 C 1.50700 * 119.51011 * 180.02562 * 26 25 23 28 28 C 1.53007 * 117.49802 * 163.62622 * 27 26 25 29 29 C 1.52996 * 59.99924 * 252.51011 * 28 27 26 30 30 C 1.38018 * 120.97791 * 359.74702 * 26 25 23 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 42 42 H 1.07994 * 120.52219 * 359.97438 * 22 21 19 43 43 H 0.96695 * 113.99972 * 90.00537 * 24 23 22 44 44 H 1.09001 * 115.55506 * 309.33447 * 27 26 25 45 45 H 1.08995 * 117.49854 * 0.02562 * 28 27 26 46 46 H 1.08997 * 117.49674 * 145.02242 * 28 27 26 47 47 H 1.09003 * 117.50168 * 252.50996 * 29 28 27 48 48 H 1.09002 * 117.50342 * 107.48874 * 29 28 27 49 49 H 1.07994 * 120.43896 * 180.28754 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 5.6569 -3.3861 -4.4388 12 1 5.6003 -1.1502 -5.3758 13 1 6.9993 -1.6237 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1425 4.7668 20 8 2.7029 1.0462 4.9115 21 6 3.3845 -0.9564 5.9101 22 6 3.6279 -2.3235 5.7646 23 6 4.0731 -3.0474 6.8625 24 8 4.3134 -4.3769 6.7366 25 7 4.2646 -2.4564 8.0295 26 6 4.0453 -1.1677 8.2039 27 6 4.2825 -0.5510 9.5583 28 6 4.3911 0.9735 9.6311 29 6 5.6407 0.1083 9.8063 30 6 3.6072 -0.3744 7.1629 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.8697 -1.6697 3.4512 42 1 3.4723 -2.8101 4.8131 43 1 5.2195 -4.5897 6.4748 44 1 3.8109 -1.0628 10.3972 45 1 4.2906 1.5303 8.6995 46 1 3.9908 1.4647 10.5180 47 1 6.0626 0.0303 10.8084 48 1 6.3628 0.0957 8.9898 49 1 3.4348 0.6809 7.3143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092670533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:56 Heat of formation + Delta-G solvation = 9.368444 kcal Electronic energy + Delta-G solvation = -29605.624015 eV Core-core repulsion = 25534.494960 eV Total energy + Delta-G solvation = -4071.129055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.24383 -39.64374 -38.23776 -38.04422 -36.51701 -34.88829 -33.32266 -32.76738 -30.80787 -30.44698 -29.34023 -26.23399 -25.57643 -25.16468 -24.26841 -22.93444 -22.49183 -21.99967 -20.57113 -19.93720 -19.44778 -18.79232 -17.70757 -17.40386 -16.83951 -16.16165 -16.03433 -15.84071 -15.48829 -15.32177 -15.04362 -14.91022 -14.32672 -13.92512 -13.76533 -13.49384 -13.17746 -12.80137 -12.72339 -12.67927 -12.42465 -12.20252 -11.97598 -11.78955 -11.60599 -11.51422 -11.20233 -11.09408 -10.92847 -10.87304 -10.83891 -10.55439 -10.23732 -10.21170 -10.06112 -9.97805 -9.87235 -9.75544 -9.44382 -9.17193 -9.13110 -8.69622 -6.88447 -5.69732 -3.11844 0.31757 0.53971 2.54370 2.87911 3.02401 3.24342 3.36663 3.41760 3.43753 3.62361 3.88673 4.28504 4.43473 4.45115 4.49521 4.57274 4.65138 4.66190 4.93546 5.01859 5.16026 5.18224 5.22845 5.23701 5.34256 5.42932 5.44970 5.51995 5.62747 5.68638 5.70275 5.73381 5.81406 5.98503 6.00084 6.02540 6.13782 6.19671 6.28754 6.47066 6.53757 6.55410 6.72828 6.87880 7.07650 7.30926 7.48688 7.48913 7.58278 7.81900 7.96520 8.31874 9.17529 9.78327 10.42814 11.33960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.002222 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.671819 B =12595.822551 C =13420.842838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.604 5.604 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.921 5.921 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.078 0.922 17 C 0.132 3.868 18 N -0.713 5.713 19 C 0.556 3.444 20 O -0.529 6.529 21 C -0.064 4.064 22 C -0.160 4.160 23 C 0.316 3.684 24 O -0.478 6.478 25 N -0.484 5.484 26 C 0.181 3.819 27 C -0.112 4.112 28 C -0.171 4.171 29 C -0.160 4.160 30 C -0.125 4.125 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.013 0.987 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.402 0.598 42 H 0.148 0.852 43 H 0.404 0.596 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 0.571 23.599 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.131 4.131 16 H 0.096 0.904 17 C 0.009 3.991 18 N -0.364 5.364 19 C 0.341 3.659 20 O -0.406 6.406 21 C -0.075 4.075 22 C -0.182 4.182 23 C 0.137 3.863 24 O -0.285 6.285 25 N -0.204 5.204 26 C 0.043 3.957 27 C -0.131 4.131 28 C -0.209 4.209 29 C -0.197 4.197 30 C -0.145 4.145 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.237 0.763 42 H 0.166 0.834 43 H 0.262 0.738 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.115 0.885 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.525 0.798 24.220 24.238 hybrid contribution 0.977 -0.586 -1.515 1.895 sum 0.452 0.212 22.705 22.710 Atomic orbital electron populations 1.21658 0.95430 1.01467 1.00719 1.22601 0.94642 0.99536 0.96253 0.90957 1.21998 0.84008 0.95906 0.94684 1.44478 1.10598 1.78991 0.98934 1.19060 0.91051 1.37906 0.87208 0.90557 1.24791 0.97302 1.01892 0.96639 1.69784 1.22440 1.53640 1.11110 0.86076 0.81198 0.77836 0.80402 1.21618 1.21604 1.20712 1.21331 0.93364 0.97058 0.86777 1.22516 0.98754 0.98233 0.93574 0.90410 1.21550 0.99815 0.93875 0.83886 1.46011 1.67106 1.13388 1.09904 1.18054 0.78255 0.87063 0.82543 1.90784 1.51257 1.14840 1.83734 1.20328 0.98953 0.93281 0.94901 1.22355 1.02091 0.93429 1.00278 1.18904 0.95499 0.84371 0.87570 1.84807 1.35626 1.17304 1.90784 1.66699 1.16194 1.11889 1.25593 1.20000 0.94067 0.87415 0.94209 1.20790 1.03048 0.95062 0.94160 1.23166 1.01711 0.91675 1.04313 1.22997 0.90635 1.02594 1.03506 1.22100 0.98372 1.02637 0.91415 0.93644 0.92586 0.92925 0.87538 0.96857 0.93675 0.95839 0.96482 0.90837 0.91176 0.76254 0.83434 0.73802 0.85658 0.87842 0.87673 0.87906 0.88531 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.31 37.16 0.35 -1.65 16 2 C -0.11 -1.95 3.09 -88.47 -0.27 -2.22 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.70 5.36 -2.53 -0.01 3.69 16 5 N -0.60 -14.99 3.39 -170.07 -0.58 -15.57 16 6 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 10 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.14 2.74 6.64 -3.07 -0.02 2.72 16 15 C -0.11 -1.76 2.45 -88.79 -0.22 -1.98 16 16 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 17 C 0.13 1.84 5.01 -4.04 -0.02 1.82 16 18 N -0.71 -8.75 5.39 -61.15 -0.33 -9.07 16 19 C 0.56 7.35 7.80 -12.18 -0.09 7.26 16 20 O -0.53 -8.59 16.44 5.36 0.09 -8.50 16 21 C -0.06 -0.72 5.91 -104.67 -0.62 -1.34 16 22 C -0.16 -1.58 9.55 -38.84 -0.37 -1.95 16 23 C 0.32 3.31 7.74 -17.17 -0.13 3.18 16 24 O -0.48 -4.29 13.56 -18.75 -0.25 -4.54 16 25 N -0.48 -5.51 10.27 -9.60 -0.10 -5.61 16 26 C 0.18 1.85 6.46 -82.65 -0.53 1.31 16 27 C -0.11 -0.88 6.22 -91.77 -0.57 -1.45 16 28 C -0.17 -1.07 9.79 -26.73 -0.26 -1.33 16 29 C -0.16 -1.04 10.23 -26.73 -0.27 -1.31 16 30 C -0.12 -1.32 8.92 -39.03 -0.35 -1.67 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.11 2.83 5.87 -51.93 -0.30 2.53 16 35 H 0.01 0.33 7.98 -51.93 -0.41 -0.08 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.40 4.16 6.54 -40.82 -0.27 3.89 16 42 H 0.15 1.17 6.53 -52.49 -0.34 0.82 16 43 H 0.40 1.66 9.06 45.56 0.41 2.07 16 44 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.68 6.37 -51.93 -0.33 0.35 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.15 1.53 5.91 -52.49 -0.31 1.22 16 LS Contribution 399.69 15.07 6.02 6.02 Total: -1.00 -33.54 399.69 -9.82 -43.36 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.56 Total: 4.58 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.65 Total: -1.58 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.45 Total: -56.08 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.17 Total: -13.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.54 -9.82 -43.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092670533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.733 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds