Wall clock time and date at job start Wed Apr 1 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.36937 * 125.65098 * 204.09440 * 5 4 2 7 7 H 1.08000 * 120.00262 * 180.02562 * 6 5 4 8 8 C 1.38813 * 119.99548 * 0.03593 * 6 5 4 9 9 N 1.31615 * 120.00732 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99599 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46881 * 90.00394 * 10 8 6 12 12 H 1.48499 * 109.47149 * 210.00031 * 10 8 6 13 13 H 1.48496 * 109.47418 * 330.00294 * 10 8 6 14 14 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 15 15 C 1.54322 * 107.27336 * 358.94171 * 14 5 4 16 16 H 1.09002 * 110.71963 * 96.17078 * 15 14 5 17 17 C 1.53001 * 110.71941 * 219.26699 * 15 14 5 18 18 N 1.46496 * 109.47222 * 291.15682 * 17 15 14 19 19 C 1.34779 * 119.99713 * 180.02562 * 18 17 15 20 20 O 1.21507 * 120.00333 * 359.97438 * 19 18 17 21 21 C 1.48171 * 119.99666 * 179.97438 * 19 18 17 22 22 C 1.39617 * 120.89173 * 0.02562 * 21 19 18 23 23 C 1.38844 * 118.94858 * 179.97438 * 22 21 19 24 24 O 1.35682 * 119.62156 * 179.97438 * 23 22 21 25 25 N 1.32205 * 120.75479 * 0.02562 * 23 22 21 26 26 C 1.31878 * 121.97160 * 359.97186 * 25 23 22 27 27 C 1.50700 * 119.51011 * 180.02562 * 26 25 23 28 28 C 1.53007 * 117.49802 * 163.62622 * 27 26 25 29 29 C 1.52996 * 59.99924 * 252.51011 * 28 27 26 30 30 C 1.38018 * 120.97791 * 359.74702 * 26 25 23 31 31 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 32 32 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 33 33 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 34 34 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 35 35 H 1.09003 * 110.36973 * 323.75054 * 4 2 1 36 36 H 0.96996 * 120.00556 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.88222 * 239.52595 * 14 5 4 38 38 H 1.09005 * 110.01447 * 118.43174 * 14 5 4 39 39 H 1.08999 * 109.47061 * 51.15825 * 17 15 14 40 40 H 1.09006 * 109.46767 * 171.15478 * 17 15 14 41 41 H 0.97003 * 120.00294 * 359.97438 * 18 17 15 42 42 H 1.07994 * 120.52219 * 359.97438 * 22 21 19 43 43 H 0.96695 * 113.99972 * 90.00537 * 24 23 22 44 44 H 1.09001 * 115.55506 * 309.33447 * 27 26 25 45 45 H 1.08995 * 117.49854 * 0.02562 * 28 27 26 46 46 H 1.08997 * 117.49674 * 145.02242 * 28 27 26 47 47 H 1.09003 * 117.50168 * 252.50996 * 29 28 27 48 48 H 1.09002 * 117.50342 * 107.48874 * 29 28 27 49 49 H 1.07994 * 120.43896 * 180.28754 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4640 -1.5667 -1.6073 7 1 5.4125 -1.8770 -1.1944 8 6 4.2960 -1.4957 -2.9834 9 7 3.1404 -1.1170 -3.4868 10 14 5.7107 -1.9365 -4.1209 11 1 5.6569 -3.3861 -4.4388 12 1 5.6003 -1.1502 -5.3758 13 1 6.9993 -1.6237 -3.4525 14 6 3.4675 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4468 -1.6633 1.4209 17 6 2.2349 0.0839 2.4364 18 7 2.7054 -0.7207 3.5665 19 6 2.9091 -0.1425 4.7668 20 8 2.7029 1.0462 4.9115 21 6 3.3845 -0.9564 5.9101 22 6 3.6279 -2.3235 5.7646 23 6 4.0731 -3.0474 6.8625 24 8 4.3134 -4.3769 6.7366 25 7 4.2646 -2.4564 8.0295 26 6 4.0453 -1.1677 8.2039 27 6 4.2825 -0.5510 9.5583 28 6 4.3911 0.9735 9.6311 29 6 5.6407 0.1083 9.8063 30 6 3.6072 -0.3744 7.1629 31 1 -0.3633 0.4520 0.9229 32 1 -0.3633 0.5732 -0.8529 33 1 -0.3634 -1.0253 -0.0699 34 1 2.1559 -0.1720 -2.0837 35 1 1.4519 -1.6704 -1.4025 36 1 3.0231 -1.0670 -4.4483 37 1 4.2426 -0.5998 1.0598 38 1 3.6662 -2.2885 1.0422 39 1 2.9555 0.8748 2.2284 40 1 1.2699 0.5271 2.6827 41 1 2.8697 -1.6697 3.4512 42 1 3.4723 -2.8101 4.8131 43 1 5.2195 -4.5897 6.4748 44 1 3.8109 -1.0628 10.3972 45 1 4.2906 1.5303 8.6995 46 1 3.9908 1.4647 10.5180 47 1 6.0626 0.0303 10.8084 48 1 6.3628 0.0957 8.9898 49 1 3.4348 0.6809 7.3143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092670533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:55 Heat of formation + Delta-G solvation = -15.015393 kcal Electronic energy + Delta-G solvation = -29606.681378 eV Core-core repulsion = 25534.494960 eV Total energy + Delta-G solvation = -4072.186418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06021 -40.69951 -39.54868 -38.84305 -37.17280 -36.20521 -34.81389 -33.84626 -32.55930 -31.24642 -30.68498 -27.93162 -26.94246 -26.04125 -25.35288 -24.19502 -23.20688 -22.76064 -21.69134 -21.45271 -20.69813 -19.66576 -18.86530 -18.46950 -18.22259 -17.23541 -16.90870 -16.76808 -16.62469 -16.46126 -16.06862 -15.78459 -15.65499 -15.56006 -14.90130 -14.73768 -14.43948 -14.10687 -14.01199 -13.58163 -13.39288 -13.36848 -13.05099 -13.02831 -12.88803 -12.75559 -12.70228 -12.47095 -12.29275 -11.97807 -11.86751 -11.69032 -11.67411 -11.51900 -11.40523 -11.38627 -11.10736 -11.03738 -10.74412 -10.58982 -10.21632 -9.89442 -8.87676 -7.77251 -5.21518 -0.52624 -0.20835 1.46163 1.47476 1.56127 1.62821 1.87758 2.33891 2.48546 2.49098 2.98045 3.20439 3.31873 3.42894 3.63036 3.75546 3.78078 3.80688 3.88228 3.94519 3.97053 4.03170 4.08776 4.24682 4.36429 4.48310 4.52857 4.57222 4.61611 4.73843 4.75443 4.79061 4.84283 4.85851 4.96804 5.02332 5.09579 5.13197 5.15121 5.23329 5.26791 5.31977 5.38870 5.40223 5.50541 5.72911 5.85159 6.31109 6.33319 6.51216 6.76758 6.96135 7.11474 7.79412 8.42634 9.24145 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.002222 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.671819 B =12595.822551 C =13420.842838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.067 0.933 4 C 0.161 3.839 5 N -0.629 5.629 6 C -0.238 4.238 7 H 0.080 0.920 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.136 3.864 15 C -0.091 4.091 16 H 0.096 0.904 17 C 0.143 3.857 18 N -0.705 5.705 19 C 0.559 3.441 20 O -0.562 6.562 21 C -0.073 4.073 22 C -0.154 4.154 23 C 0.312 3.688 24 O -0.485 6.485 25 N -0.503 5.503 26 C 0.178 3.822 27 C -0.127 4.127 28 C -0.163 4.163 29 C -0.156 4.156 30 C -0.130 4.130 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.068 0.932 35 H -0.010 1.010 36 H 0.246 0.754 37 H 0.021 0.979 38 H 0.030 0.970 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.413 0.587 42 H 0.167 0.833 43 H 0.423 0.577 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 0.154 25.577 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.036 3.964 5 N -0.355 5.355 6 C -0.367 4.367 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.195 1.195 14 C 0.011 3.989 15 C -0.110 4.110 16 H 0.114 0.886 17 C 0.020 3.980 18 N -0.356 5.356 19 C 0.346 3.654 20 O -0.442 6.442 21 C -0.084 4.084 22 C -0.176 4.176 23 C 0.133 3.867 24 O -0.295 6.295 25 N -0.223 5.223 26 C 0.041 3.959 27 C -0.146 4.146 28 C -0.200 4.200 29 C -0.193 4.193 30 C -0.151 4.151 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.008 0.992 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.250 0.750 42 H 0.185 0.815 43 H 0.285 0.715 44 H 0.149 0.851 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.107 0.893 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.354 0.348 26.224 26.229 hybrid contribution 0.981 -0.504 -2.090 2.363 sum 0.627 -0.156 24.134 24.143 Atomic orbital electron populations 1.21612 0.92787 1.01951 1.02232 1.22429 0.96710 0.98431 0.94423 0.91424 1.21772 0.83711 0.94943 0.95944 1.44804 1.10501 1.79012 1.01144 1.19430 0.91977 1.37243 0.88014 0.90245 1.25615 0.99680 1.02573 0.98164 1.70050 1.24124 1.54817 1.10764 0.85085 0.78840 0.77294 0.78152 1.21335 1.22080 1.19538 1.21521 0.95581 0.97738 0.84035 1.22349 0.96570 0.98682 0.93407 0.88551 1.21307 1.00148 0.93113 0.83465 1.45867 1.66682 1.13814 1.09247 1.18263 0.77506 0.86721 0.82929 1.90768 1.52819 1.16316 1.84285 1.20201 1.00027 0.93738 0.94412 1.22469 1.01361 0.92787 1.00989 1.19054 0.95278 0.84855 0.87522 1.84763 1.37501 1.16430 1.90847 1.66767 1.16821 1.12480 1.26211 1.20323 0.93373 0.87126 0.95073 1.20886 1.04399 0.96103 0.93191 1.23242 1.01222 0.90665 1.04850 1.23068 0.90166 1.01980 1.04124 1.22193 0.98517 1.02898 0.91468 0.90690 0.92754 0.92738 0.91374 0.99156 0.94378 0.96075 0.95232 0.92263 0.89945 0.74957 0.81520 0.71486 0.85076 0.88375 0.85853 0.86250 0.89333 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.31 71.98 0.67 -2.87 16 2 C -0.10 -3.45 3.09 -9.40 -0.03 -3.48 16 3 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 4 C 0.16 7.68 5.36 86.85 0.47 8.15 16 5 N -0.63 -31.48 3.39 -691.99 -2.35 -33.83 16 6 C -0.24 -13.12 10.27 84.03 0.86 -12.26 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 9 N -0.95 -56.01 10.09 21.65 0.22 -55.79 16 10 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 14 C 0.14 5.17 6.64 86.73 0.58 5.74 16 15 C -0.09 -2.70 2.45 -9.61 -0.02 -2.72 16 16 H 0.10 2.56 8.04 -2.39 -0.02 2.54 16 17 C 0.14 3.68 5.01 86.38 0.43 4.12 16 18 N -0.70 -15.74 5.39 -465.66 -2.51 -18.25 16 19 C 0.56 13.98 7.80 86.88 0.68 14.65 16 20 O -0.56 -17.73 16.44 -3.74 -0.06 -17.79 16 21 C -0.07 -1.55 5.91 -19.90 -0.12 -1.66 16 22 C -0.15 -2.76 9.55 22.75 0.22 -2.55 16 23 C 0.31 6.06 7.74 84.78 0.66 6.72 16 24 O -0.48 -7.80 13.56 -90.00 -1.22 -9.02 16 25 N -0.50 -10.87 10.27 -297.17 -3.05 -13.92 16 26 C 0.18 3.48 6.46 42.50 0.27 3.75 16 27 C -0.13 -1.83 6.22 -11.54 -0.07 -1.90 16 28 C -0.16 -1.77 9.79 30.60 0.30 -1.47 16 29 C -0.16 -1.80 10.23 30.59 0.31 -1.48 16 30 C -0.13 -2.65 8.92 22.63 0.20 -2.45 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.49 8.07 -2.38 -0.02 1.47 16 34 H 0.07 3.79 5.87 -2.39 -0.01 3.77 16 35 H -0.01 -0.49 7.98 -2.39 -0.02 -0.51 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.02 0.82 7.73 -2.39 -0.02 0.80 16 38 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.06 1.74 8.00 -2.39 -0.02 1.72 16 40 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.41 7.41 6.54 -92.71 -0.61 6.80 16 42 H 0.17 2.20 6.53 -2.91 -0.02 2.18 16 43 H 0.42 2.65 9.06 -74.06 -0.67 1.98 16 44 H 0.13 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.10 1.18 6.37 -2.39 -0.02 1.17 16 46 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.16 3.02 5.91 -2.91 -0.02 3.00 16 Total: -1.00 -73.81 399.69 -1.36 -75.17 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.29 Total: 19.16 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 5.87 Total: 6.94 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -7.69 Total: -121.78 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -1.28 Total: -26.80 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.81 -1.36 -75.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092670533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.156 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds