Wall clock time and date at job start Wed Apr 1 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88445 * 2 1 4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.07995 * 120.00281 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 0.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.08997 * 110.72163 * 96.18354 * 15 14 5 17 17 C 1.53003 * 110.72022 * 219.45263 * 15 14 5 18 18 N 1.46494 * 109.47093 * 288.52410 * 17 15 14 19 19 C 1.34776 * 119.99924 * 180.02562 * 18 17 15 20 20 O 1.21548 * 120.00177 * 359.97438 * 19 18 17 21 21 C 1.47923 * 120.00354 * 179.97438 * 19 18 17 22 22 C 1.39466 * 119.71614 * 180.02562 * 21 19 18 23 23 C 1.38418 * 119.06876 * 179.97438 * 22 21 19 24 24 C 1.38699 * 118.71604 * 359.83558 * 23 22 21 25 25 C 1.39545 * 119.04782 * 0.23261 * 24 23 22 26 26 N 1.31305 * 120.84511 * 359.59147 * 25 24 23 27 27 O 1.35523 * 121.71992 * 180.46370 * 24 23 22 28 28 C 1.42881 * 117.72928 * 342.43929 * 27 24 23 29 29 C 1.53397 * 108.51279 * 49.39247 * 28 27 24 30 30 C 1.50483 * 119.63353 * 179.59523 * 23 22 21 31 31 H 1.09001 * 109.47276 * 182.42937 * 1 2 3 32 32 H 1.09003 * 109.46690 * 302.42477 * 1 2 3 33 33 H 1.08998 * 109.47248 * 62.42638 * 1 2 3 34 34 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 35 35 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 36 36 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 38 38 H 1.08999 * 109.87327 * 118.35916 * 14 5 4 39 39 H 1.09000 * 109.46700 * 48.52364 * 17 15 14 40 40 H 1.09004 * 109.46934 * 168.52488 * 17 15 14 41 41 H 0.96994 * 120.00707 * 0.02562 * 18 17 15 42 42 H 1.07995 * 120.46717 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.58046 * 179.82862 * 25 24 23 44 44 H 1.09000 * 109.62848 * 169.09386 * 28 27 24 45 45 H 1.08995 * 109.62963 * 289.68414 * 28 27 24 46 46 H 1.08998 * 109.68507 * 55.06603 * 29 28 27 47 47 H 1.09000 * 109.68514 * 175.58848 * 29 28 27 48 48 H 1.08999 * 109.45806 * 282.58629 * 30 23 22 49 49 H 1.08997 * 109.45592 * 42.53474 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7766 6 6 4.4637 -1.5645 -1.6126 7 1 5.4129 -1.8750 -1.2017 8 6 4.2935 -1.4915 -2.9883 9 7 3.1367 -1.1126 -3.4891 10 14 5.7060 -1.9310 -4.1289 11 1 6.1137 -3.3392 -3.8920 12 1 5.2707 -1.7729 -5.5397 13 1 6.8566 -1.0310 -3.8615 14 6 3.4675 -1.2744 0.6955 15 6 2.0862 -0.8083 1.2019 16 1 1.4468 -1.6636 1.4204 17 6 2.2350 0.0867 2.4339 18 7 2.6469 -0.7260 3.5810 19 6 2.8403 -0.1468 4.7825 20 8 2.6734 1.0500 4.9142 21 6 3.2557 -0.9674 5.9410 22 6 3.4536 -0.3619 7.1817 23 6 3.8417 -1.1426 8.2568 24 6 4.0172 -2.5046 8.0623 25 6 3.8024 -3.0409 6.7921 26 7 3.4314 -2.2753 5.7920 27 8 4.3871 -3.3270 9.0740 28 6 4.9594 -2.7311 10.2397 29 6 4.0560 -1.5760 10.6899 30 6 4.0676 -0.5010 9.5991 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4757 -0.9109 34 1 1.4518 -1.6698 -1.4031 35 1 2.1541 -0.1717 -2.0842 36 1 3.0177 -1.0619 -4.4504 37 1 4.2427 -0.6001 1.0596 38 1 3.6651 -2.2897 1.0391 39 1 2.9889 0.8497 2.2396 40 1 1.2807 0.5661 2.6521 41 1 2.7805 -1.6809 3.4759 42 1 3.3053 0.7010 7.3021 43 1 3.9393 -4.0999 6.6304 44 1 5.0276 -3.4737 11.0347 45 1 5.9529 -2.3490 10.0054 46 1 3.0391 -1.9405 10.8353 47 1 4.4328 -1.1573 11.6230 48 1 5.0318 0.0075 9.6008 49 1 3.2757 0.2222 9.7937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093162310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:29 Heat of formation + Delta-G solvation = -23.398366 kcal Electronic energy + Delta-G solvation = -29627.305184 eV Core-core repulsion = 25554.755253 eV Total energy + Delta-G solvation = -4072.549931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55451 -39.84203 -38.49795 -37.76524 -35.19241 -34.60245 -32.93324 -32.13123 -31.20963 -30.68924 -29.17417 -26.70249 -26.05481 -25.47215 -24.67601 -23.66173 -22.83660 -21.74033 -20.25459 -19.78994 -19.27151 -18.24774 -18.13624 -17.34076 -16.73833 -16.13728 -15.87794 -15.47032 -15.28067 -15.03901 -14.87369 -14.55866 -14.36243 -13.97195 -13.89839 -13.84608 -13.65223 -13.13453 -13.08592 -12.79873 -12.58341 -12.51789 -12.06310 -11.86266 -11.51803 -11.49420 -11.38015 -11.28416 -11.09461 -10.84774 -10.74701 -10.40990 -10.15086 -9.99262 -9.89616 -9.87710 -9.81061 -9.67975 -9.33411 -8.98900 -8.71484 -8.60501 -6.78246 -5.60634 -3.02091 0.42323 0.78781 2.55601 2.72079 3.17457 3.43626 3.47517 3.48968 3.62457 3.92654 3.99690 4.05251 4.17482 4.26403 4.52328 4.57042 4.70097 4.78522 4.89945 4.91705 5.10574 5.17299 5.26075 5.30594 5.36104 5.37717 5.45745 5.53700 5.54610 5.62950 5.70392 5.82397 5.90012 5.94190 6.12137 6.17314 6.26224 6.32922 6.51017 6.58108 6.65348 6.70191 6.74885 6.85325 7.01424 7.37322 7.58611 7.67304 7.69645 7.91076 8.24160 8.41157 9.26876 9.87476 10.53267 11.42983 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002077 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.856078 B =13479.955235 C =14541.586881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.220 4.220 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.915 3.085 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.140 3.860 15 C -0.109 4.109 16 H 0.078 0.922 17 C 0.131 3.869 18 N -0.703 5.703 19 C 0.571 3.429 20 O -0.542 6.542 21 C 0.046 3.954 22 C -0.073 4.073 23 C -0.131 4.131 24 C 0.102 3.898 25 C 0.083 3.917 26 N -0.423 5.423 27 O -0.305 6.305 28 C 0.057 3.943 29 C -0.161 4.161 30 C -0.081 4.081 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.013 0.987 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.024 0.976 38 H 0.020 0.980 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.412 0.588 42 H 0.151 0.849 43 H 0.172 0.828 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 -1.129 29.387 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.745 3.255 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.014 3.986 15 C -0.129 4.129 16 H 0.096 0.904 17 C 0.008 3.992 18 N -0.353 5.353 19 C 0.356 3.644 20 O -0.420 6.420 21 C -0.091 4.091 22 C -0.094 4.094 23 C -0.140 4.140 24 C 0.053 3.947 25 C -0.080 4.080 26 N -0.135 5.135 27 O -0.216 6.216 28 C -0.018 4.018 29 C -0.198 4.198 30 C -0.118 4.118 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.124 0.876 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.169 0.831 43 H 0.189 0.811 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.056 -0.822 28.391 28.422 hybrid contribution 1.004 -0.263 0.352 1.096 sum -0.051 -1.084 28.742 28.763 Atomic orbital electron populations 1.21651 0.95524 1.01217 1.00814 1.22601 0.94570 0.99525 0.96416 0.91021 1.21976 0.84059 0.95903 0.94654 1.44542 1.10512 1.79032 0.99015 1.19030 0.91050 1.37615 0.87176 0.90615 1.24783 0.97284 1.02121 0.96611 1.69786 1.22334 1.53898 1.11132 0.86150 0.81239 0.78158 0.79937 1.21266 1.21601 1.21207 1.21398 0.93406 0.97292 0.86473 1.22498 0.98711 0.98146 0.93517 0.90388 1.21534 1.00208 0.93734 0.83755 1.45936 1.67560 1.13168 1.08647 1.17701 0.77706 0.86554 0.82444 1.90780 1.52500 1.14235 1.84448 1.21084 1.03496 0.90289 0.94268 1.21869 0.94926 1.01745 0.90830 1.20096 1.03590 0.92968 0.97306 1.20026 0.95652 0.89568 0.89450 1.22434 0.99679 1.00834 0.85065 1.67561 1.08750 1.04918 1.32260 1.85978 1.75796 1.34667 1.25207 1.23102 0.95973 0.96792 0.85907 1.22269 1.01745 0.96508 0.99323 1.20499 1.03802 0.97904 0.89580 0.93024 0.93686 0.92596 0.96951 0.87600 0.93732 0.95792 0.96167 0.91052 0.91395 0.75218 0.83122 0.81096 0.86928 0.91295 0.90126 0.89147 0.89521 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.29 37.16 0.35 -1.77 16 2 C -0.11 -2.09 3.09 -88.47 -0.27 -2.36 16 3 H 0.07 1.37 8.05 -51.92 -0.42 0.95 16 4 C 0.16 3.87 5.35 -2.53 -0.01 3.85 16 5 N -0.61 -15.74 3.40 -169.86 -0.58 -16.32 16 6 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 10 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.14 2.96 6.77 -2.92 -0.02 2.95 16 15 C -0.11 -1.90 2.43 -88.78 -0.22 -2.12 16 16 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 17 C 0.13 2.05 5.02 -4.04 -0.02 2.03 16 18 N -0.70 -10.35 5.46 -61.22 -0.33 -10.69 16 19 C 0.57 8.70 7.80 -12.29 -0.10 8.60 16 20 O -0.54 -9.53 16.32 5.32 0.09 -9.44 16 21 C 0.05 0.60 6.75 -83.02 -0.56 0.03 16 22 C -0.07 -0.79 9.30 -39.06 -0.36 -1.16 16 23 C -0.13 -1.17 5.75 -104.49 -0.60 -1.77 16 24 C 0.10 0.95 6.50 -38.92 -0.25 0.70 16 25 C 0.08 0.84 11.12 -17.29 -0.19 0.65 16 26 N -0.42 -5.22 9.52 -9.61 -0.09 -5.31 16 27 O -0.30 -2.46 10.29 -18.26 -0.19 -2.65 16 28 C 0.06 0.27 7.01 37.36 0.26 0.53 16 29 C -0.16 -0.65 6.20 -26.45 -0.16 -0.81 16 30 C -0.08 -0.45 5.90 -27.91 -0.16 -0.62 16 31 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 35 H 0.11 2.91 5.86 -51.93 -0.30 2.61 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.41 5.72 7.79 -40.82 -0.32 5.40 16 42 H 0.15 1.53 7.64 -52.49 -0.40 1.13 16 43 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -33.32 394.75 -9.90 -43.22 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.70 Total: 2.57 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.58 Total: 1.88 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.44 Total: -58.91 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.10 Total: -12.09 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.32 -9.90 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093162310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.826 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds