Wall clock time and date at job start Wed Apr 1 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.88445 * 2 1 4 4 C 1.54908 * 111.00368 * 236.12120 * 2 1 3 5 5 N 1.47425 * 104.92961 * 204.85960 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.07995 * 120.00281 * 180.02562 * 6 5 4 8 8 C 1.38810 * 119.99650 * 0.02562 * 6 5 4 9 9 N 1.31621 * 120.00025 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47166 * 59.99694 * 10 8 6 12 12 H 1.48493 * 109.47565 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47135 * 300.00010 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.08997 * 110.72163 * 96.18354 * 15 14 5 17 17 C 1.53003 * 110.72022 * 219.45263 * 15 14 5 18 18 N 1.46494 * 109.47093 * 288.52410 * 17 15 14 19 19 C 1.34776 * 119.99924 * 180.02562 * 18 17 15 20 20 O 1.21548 * 120.00177 * 359.97438 * 19 18 17 21 21 C 1.47923 * 120.00354 * 179.97438 * 19 18 17 22 22 C 1.39466 * 119.71614 * 180.02562 * 21 19 18 23 23 C 1.38418 * 119.06876 * 179.97438 * 22 21 19 24 24 C 1.38699 * 118.71604 * 359.83558 * 23 22 21 25 25 C 1.39545 * 119.04782 * 0.23261 * 24 23 22 26 26 N 1.31305 * 120.84511 * 359.59147 * 25 24 23 27 27 O 1.35523 * 121.71992 * 180.46370 * 24 23 22 28 28 C 1.42881 * 117.72928 * 342.43929 * 27 24 23 29 29 C 1.53397 * 108.51279 * 49.39247 * 28 27 24 30 30 C 1.50483 * 119.63353 * 179.59523 * 23 22 21 31 31 H 1.09001 * 109.47276 * 182.42937 * 1 2 3 32 32 H 1.09003 * 109.46690 * 302.42477 * 1 2 3 33 33 H 1.08998 * 109.47248 * 62.42638 * 1 2 3 34 34 H 1.09002 * 110.36632 * 323.75356 * 4 2 1 35 35 H 1.08995 * 110.36781 * 85.96593 * 4 2 1 36 36 H 0.97001 * 119.99611 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 38 38 H 1.08999 * 109.87327 * 118.35916 * 14 5 4 39 39 H 1.09000 * 109.46700 * 48.52364 * 17 15 14 40 40 H 1.09004 * 109.46934 * 168.52488 * 17 15 14 41 41 H 0.96994 * 120.00707 * 0.02562 * 18 17 15 42 42 H 1.07995 * 120.46717 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.58046 * 179.82862 * 25 24 23 44 44 H 1.09000 * 109.62848 * 169.09386 * 28 27 24 45 45 H 1.08995 * 109.62963 * 289.68414 * 28 27 24 46 46 H 1.08998 * 109.68507 * 55.06603 * 29 28 27 47 47 H 1.09000 * 109.68514 * 175.58848 * 29 28 27 48 48 H 1.08999 * 109.45806 * 282.58629 * 30 23 22 49 49 H 1.08997 * 109.45592 * 42.53474 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0852 -0.8061 -1.2006 5 7 3.4280 -1.2427 -0.7766 6 6 4.4637 -1.5645 -1.6126 7 1 5.4129 -1.8750 -1.2017 8 6 4.2935 -1.4915 -2.9883 9 7 3.1367 -1.1126 -3.4891 10 14 5.7060 -1.9310 -4.1289 11 1 6.1137 -3.3392 -3.8920 12 1 5.2707 -1.7729 -5.5397 13 1 6.8566 -1.0310 -3.8615 14 6 3.4675 -1.2744 0.6955 15 6 2.0862 -0.8083 1.2019 16 1 1.4468 -1.6636 1.4204 17 6 2.2350 0.0867 2.4339 18 7 2.6469 -0.7260 3.5810 19 6 2.8403 -0.1468 4.7825 20 8 2.6734 1.0500 4.9142 21 6 3.2557 -0.9674 5.9410 22 6 3.4536 -0.3619 7.1817 23 6 3.8417 -1.1426 8.2568 24 6 4.0172 -2.5046 8.0623 25 6 3.8024 -3.0409 6.7921 26 7 3.4314 -2.2753 5.7920 27 8 4.3871 -3.3270 9.0740 28 6 4.9594 -2.7311 10.2397 29 6 4.0560 -1.5760 10.6899 30 6 4.0676 -0.5010 9.5991 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3633 0.5511 0.8675 33 1 -0.3633 0.4757 -0.9109 34 1 1.4518 -1.6698 -1.4031 35 1 2.1541 -0.1717 -2.0842 36 1 3.0177 -1.0619 -4.4504 37 1 4.2427 -0.6001 1.0596 38 1 3.6651 -2.2897 1.0391 39 1 2.9889 0.8497 2.2396 40 1 1.2807 0.5661 2.6521 41 1 2.7805 -1.6809 3.4759 42 1 3.3053 0.7010 7.3021 43 1 3.9393 -4.0999 6.6304 44 1 5.0276 -3.4737 11.0347 45 1 5.9529 -2.3490 10.0054 46 1 3.0391 -1.9405 10.8353 47 1 4.4328 -1.1573 11.6230 48 1 5.0318 0.0075 9.6008 49 1 3.2757 0.2222 9.7937 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093162310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:27 Heat of formation + Delta-G solvation = -45.053817 kcal Electronic energy + Delta-G solvation = -29628.244235 eV Core-core repulsion = 25554.755253 eV Total energy + Delta-G solvation = -4073.488982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.27284 -40.89191 -39.71006 -39.01591 -36.16408 -35.65318 -34.67875 -32.78595 -32.54511 -32.07595 -30.63087 -27.92561 -27.21608 -26.76834 -25.79876 -24.55309 -24.21143 -22.72236 -21.53485 -21.29409 -20.54661 -19.15443 -18.87241 -18.74456 -18.16208 -17.17135 -16.87733 -16.70583 -16.40681 -16.19390 -15.79031 -15.63829 -15.58401 -15.09061 -14.98803 -14.82040 -14.62593 -14.40178 -14.24519 -14.03930 -13.82462 -13.53472 -13.38231 -13.34309 -12.99911 -12.77004 -12.66135 -12.49105 -12.46604 -12.00057 -11.90225 -11.85354 -11.75768 -11.62537 -11.46078 -11.39216 -11.10339 -10.73840 -10.67071 -10.60929 -10.17424 -9.51481 -8.87664 -7.76299 -5.20941 -0.42916 0.04230 1.45694 1.49185 1.55575 1.60301 2.00284 2.15975 2.49589 2.72222 3.11576 3.31928 3.40496 3.46219 3.62643 3.64255 3.77809 3.87218 3.88989 3.92949 3.98104 4.05667 4.25431 4.37753 4.48069 4.50688 4.53620 4.62483 4.63155 4.69853 4.75558 4.77687 4.85385 4.89218 4.94157 4.98114 5.02456 5.10431 5.14784 5.15723 5.24013 5.33981 5.39188 5.40790 5.50159 5.73472 5.85024 6.12631 6.32444 6.37021 6.71208 7.09018 7.11884 7.78884 8.43502 9.24867 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002077 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.856078 B =13479.955235 C =14541.586881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.068 0.932 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.240 4.240 7 H 0.077 0.923 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.981 3.019 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.093 0.907 17 C 0.143 3.857 18 N -0.701 5.701 19 C 0.571 3.429 20 O -0.572 6.572 21 C 0.019 3.981 22 C -0.075 4.075 23 C -0.130 4.130 24 C 0.108 3.892 25 C 0.073 3.927 26 N -0.440 5.440 27 O -0.312 6.312 28 C 0.046 3.954 29 C -0.155 4.155 30 C -0.084 4.084 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.055 0.945 34 H -0.010 1.010 35 H 0.071 0.929 36 H 0.247 0.753 37 H 0.019 0.981 38 H 0.024 0.976 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.416 0.584 42 H 0.153 0.847 43 H 0.190 0.810 44 H 0.138 0.862 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.118 0.882 48 H 0.099 0.901 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -1.575 32.403 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.087 0.913 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.809 3.191 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.013 3.987 15 C -0.108 4.108 16 H 0.111 0.889 17 C 0.019 3.981 18 N -0.351 5.351 19 C 0.357 3.643 20 O -0.451 6.451 21 C -0.117 4.117 22 C -0.096 4.096 23 C -0.138 4.138 24 C 0.059 3.941 25 C -0.090 4.090 26 N -0.152 5.152 27 O -0.224 6.224 28 C -0.028 4.028 29 C -0.193 4.193 30 C -0.120 4.120 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.008 0.992 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.253 0.747 42 H 0.171 0.829 43 H 0.207 0.793 44 H 0.155 0.845 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.678 -1.280 31.445 31.479 hybrid contribution 0.959 -0.199 -0.447 1.077 sum 0.281 -1.479 30.999 31.035 Atomic orbital electron populations 1.21605 0.92664 1.02023 1.02189 1.22444 0.96815 0.98419 0.94302 0.91329 1.21767 0.83616 0.94973 0.95932 1.44870 1.10570 1.79081 1.00951 1.19395 0.91922 1.37544 0.88073 0.90491 1.25643 0.99836 1.02499 0.98076 1.70050 1.24023 1.54720 1.10900 0.85117 0.78357 0.78129 0.77507 1.20435 1.21764 1.20426 1.21538 0.95653 0.97451 0.84099 1.22328 0.96406 0.98568 0.93535 0.88898 1.21308 1.00491 0.92978 0.83297 1.45864 1.67557 1.13249 1.08407 1.18031 0.76899 0.86421 0.82903 1.90749 1.53929 1.15481 1.84989 1.20836 1.06042 0.90685 0.94162 1.21958 0.94859 1.02064 0.90689 1.20433 1.02270 0.92784 0.98302 1.20069 0.94537 0.89851 0.89617 1.22775 0.99444 1.01507 0.85321 1.67476 1.09514 1.04780 1.33409 1.85980 1.75550 1.35109 1.25781 1.23481 0.96207 0.97926 0.85152 1.22276 1.01465 0.95710 0.99807 1.20653 1.04786 0.98509 0.88089 0.92653 0.90767 0.92633 0.99205 0.91141 0.94306 0.96285 0.95788 0.92451 0.90020 0.74725 0.82885 0.79327 0.84475 0.90537 0.90660 0.86392 0.88233 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 9.29 71.98 0.67 -3.14 16 2 C -0.10 -3.73 3.09 -9.40 -0.03 -3.76 16 3 H 0.07 2.62 8.05 -2.38 -0.02 2.60 16 4 C 0.16 8.14 5.35 86.85 0.47 8.60 16 5 N -0.63 -33.56 3.40 -691.31 -2.35 -35.91 16 6 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 8 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 9 N -0.95 -57.51 10.09 21.65 0.22 -57.29 16 10 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.14 5.87 6.77 86.68 0.59 6.46 16 15 C -0.09 -3.04 2.43 -9.60 -0.02 -3.06 16 16 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16 17 C 0.14 4.36 5.02 86.38 0.43 4.79 16 18 N -0.70 -20.35 5.46 -465.89 -2.54 -22.90 16 19 C 0.57 17.39 7.80 86.81 0.68 18.07 16 20 O -0.57 -20.16 16.32 -3.87 -0.06 -20.22 16 21 C 0.02 0.48 6.75 41.86 0.28 0.77 16 22 C -0.07 -1.58 9.30 22.61 0.21 -1.37 16 23 C -0.13 -2.10 5.75 -19.78 -0.11 -2.22 16 24 C 0.11 1.86 6.50 22.70 0.15 2.01 16 25 C 0.07 1.42 11.12 85.09 0.95 2.36 16 26 N -0.44 -10.70 9.52 -184.33 -1.76 -12.45 16 27 O -0.31 -4.32 10.29 -88.26 -0.91 -5.23 16 28 C 0.05 0.29 7.01 72.12 0.51 0.79 16 29 C -0.16 -0.74 6.20 30.78 0.19 -0.55 16 30 C -0.08 -0.71 5.90 29.83 0.18 -0.53 16 31 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 34 H -0.01 -0.54 8.04 -2.39 -0.02 -0.56 16 35 H 0.07 4.05 5.86 -2.39 -0.01 4.04 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.02 0.83 7.68 -2.38 -0.02 0.82 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.94 7.93 -2.39 -0.02 1.92 16 40 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.42 11.38 7.79 -92.71 -0.72 10.66 16 42 H 0.15 3.05 7.64 -2.91 -0.02 3.03 16 43 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.14 0.18 8.14 -2.39 -0.02 0.17 16 45 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -74.45 394.75 1.31 -73.14 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.24 Total: 19.43 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.45 Total: 12.64 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -6.43 Total: -128.55 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.97 Total: -25.45 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.45 1.31 -73.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093162310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.083 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds