Wall clock time and date at job start Wed Apr 1 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21551 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.47867 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.39700 * 120.07137 * 359.73249 * 5 3 2 7 7 C 1.38058 * 120.14345 * 179.71820 * 6 5 3 8 8 C 1.38104 * 120.29588 * 0.54784 * 7 6 5 9 9 C 1.39664 * 120.14113 * 359.72625 * 8 7 6 10 10 C 1.47868 * 120.06981 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99574 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99834 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99619 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46911 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.88694 * 54.30074 * 14 13 12 16 16 C 1.54916 * 111.00782 * 290.41705 * 14 13 12 17 17 N 1.47463 * 104.81216 * 204.94996 * 16 14 13 18 18 C 1.36937 * 125.62881 * 204.04966 * 17 16 14 19 19 H 1.08001 * 120.00065 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99879 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46928 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47168 * 119.99767 * 22 20 18 25 25 H 1.48503 * 109.46948 * 239.99631 * 22 20 18 26 26 C 1.47030 * 108.72559 * 24.07005 * 17 16 14 27 27 C 1.54326 * 107.26805 * 358.97589 * 26 17 16 28 28 H 1.08994 * 110.72248 * 96.16856 * 27 26 17 29 29 C 1.53000 * 110.86879 * 219.37440 * 27 26 17 30 30 C 1.39290 * 120.07477 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 32 32 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 34 34 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 35 35 H 1.07996 * 119.93017 * 359.97438 * 6 5 3 36 36 H 1.08001 * 119.85438 * 180.27821 * 7 6 5 37 37 H 1.08003 * 119.92807 * 179.69915 * 8 7 6 38 38 H 0.96998 * 120.00706 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47268 * 299.99670 * 13 12 10 40 40 H 1.08996 * 109.47271 * 59.99722 * 13 12 10 41 41 H 1.08997 * 110.36488 * 323.75876 * 16 14 13 42 42 H 1.09002 * 110.36308 * 86.08149 * 16 14 13 43 43 H 0.97003 * 119.99815 * 179.97438 * 21 20 18 44 44 H 1.08990 * 109.88295 * 239.55983 * 26 17 16 45 45 H 1.09000 * 110.00902 * 118.45978 * 26 17 16 46 46 H 1.09006 * 109.46956 * 173.61105 * 29 27 26 47 47 H 1.09003 * 109.46861 * 293.60542 * 29 27 26 48 48 H 1.08990 * 109.47617 * 53.60908 * 29 27 26 49 49 H 1.08011 * 120.14649 * 0.03168 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3175 -0.0417 0.0068 7 6 5.6981 -0.0434 0.0014 8 6 6.3963 1.1481 0.0014 9 6 5.7088 2.3638 0.0009 10 6 6.4579 3.6387 0.0003 11 8 5.8582 4.6960 -0.0006 12 7 7.8056 3.6283 0.0006 13 6 8.5478 4.8914 -0.0006 14 6 10.0498 4.6003 0.0008 15 1 10.3188 3.9419 -0.8252 16 6 10.4981 4.0012 1.3572 17 7 11.9300 4.3375 1.4630 18 6 12.8546 3.6624 2.2144 19 1 12.5545 2.8029 2.7955 20 6 14.1775 4.0826 2.2290 21 7 14.5433 5.1296 1.5203 22 14 15.4386 3.1620 3.2545 23 1 14.7776 2.0307 3.9534 24 1 16.5102 2.6393 2.3692 25 1 16.0304 4.0845 4.2565 26 6 12.2006 5.5177 0.6289 27 6 10.8713 5.9158 -0.0465 28 1 10.3720 6.7027 0.5188 29 6 11.1053 6.3562 -1.4929 30 6 4.3155 2.3727 0.0000 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.9500 -0.8401 0.0004 35 1 3.7776 -0.9770 0.0115 36 1 6.2346 -0.9808 0.0017 37 1 7.4763 1.1398 0.0021 38 1 8.2842 2.7846 0.0017 39 1 8.2891 5.4640 -0.8912 40 1 8.2886 5.4660 0.8887 41 1 9.9404 4.4561 2.1757 42 1 10.3607 2.9199 1.3582 43 1 15.4676 5.4235 1.5309 44 1 12.9432 5.2727 -0.1302 45 1 12.5614 6.3381 1.2493 46 1 10.1454 6.5228 -1.9818 47 1 11.6831 7.2804 -1.5023 48 1 11.6540 5.5792 -2.0250 49 1 3.7790 3.3101 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093208825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:41 Heat of formation + Delta-G solvation = -24.145080 kcal Electronic energy + Delta-G solvation = -29224.129828 eV Core-core repulsion = 25151.547517 eV Total energy + Delta-G solvation = -4072.582311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.78055 -39.81166 -38.39560 -37.78268 -35.12960 -34.78442 -33.05505 -31.99357 -31.45872 -30.74677 -29.26215 -27.40187 -26.05396 -25.30876 -24.32109 -23.44831 -22.45775 -21.50510 -20.44943 -20.03774 -19.42836 -18.72817 -17.03717 -16.77214 -16.61889 -16.45498 -15.91876 -15.66970 -15.39768 -14.97284 -14.66337 -14.56224 -14.22305 -14.13623 -13.83832 -13.58658 -13.53935 -13.24588 -12.92682 -12.81684 -12.63843 -12.54450 -12.37300 -11.83571 -11.74292 -11.68529 -11.41121 -11.22806 -10.83600 -10.80134 -10.44254 -10.25245 -10.07409 -9.99963 -9.92595 -9.73054 -9.68949 -9.57265 -9.46404 -9.40271 -8.98405 -8.62622 -6.85104 -5.73346 -3.06936 0.24713 0.70573 2.24908 2.67572 2.90770 3.12076 3.37512 3.42881 3.45510 3.58742 4.16377 4.27827 4.40156 4.46842 4.65839 4.68192 4.78456 4.97192 5.04843 5.05428 5.19364 5.20911 5.30350 5.35117 5.48845 5.50976 5.55060 5.73648 5.78046 5.81786 5.85217 5.88497 5.90047 6.00744 6.08628 6.17046 6.26347 6.30389 6.40821 6.47604 6.53962 6.61273 6.74282 6.92122 6.97087 7.46095 7.55134 7.62931 7.75883 7.82414 8.14542 8.23924 9.19985 9.80319 10.46419 11.38220 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.001973 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.162844 B =14190.084182 C =15361.376579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.529 6.529 5 C -0.147 4.147 6 C -0.066 4.066 7 C -0.131 4.131 8 C -0.059 4.059 9 C -0.136 4.136 10 C 0.554 3.446 11 O -0.535 6.535 12 N -0.717 5.717 13 C 0.132 3.868 14 C -0.114 4.114 15 H 0.080 0.920 16 C 0.142 3.858 17 N -0.606 5.606 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.184 3.816 27 C -0.110 4.110 28 H 0.068 0.932 29 C -0.134 4.134 30 C -0.001 4.001 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.401 0.599 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.035 0.965 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.331 -13.331 -6.429 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.150 4.150 6 C -0.085 4.085 7 C -0.149 4.149 8 C -0.077 4.077 9 C -0.139 4.139 10 C 0.341 3.659 11 O -0.413 6.413 12 N -0.369 5.369 13 C 0.009 3.991 14 C -0.133 4.133 15 H 0.099 0.901 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.059 3.941 27 C -0.130 4.130 28 H 0.086 0.914 29 C -0.192 4.192 30 C -0.021 4.021 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.236 0.764 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.236 0.764 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.971 -11.773 -6.370 26.587 hybrid contribution 1.269 -1.388 0.589 1.970 sum -21.702 -13.161 -5.782 26.031 Atomic orbital electron populations 1.21575 0.78990 1.02403 1.02680 1.45689 1.08010 1.08511 1.76365 1.18256 0.87116 0.83822 0.76168 1.90817 1.69790 1.31075 1.48866 1.19824 0.92843 0.94252 1.08119 1.21448 0.94759 0.96796 0.95447 1.21078 0.93807 0.98537 1.01477 1.21638 1.00581 0.91654 0.93872 1.20012 0.94022 0.93583 1.06252 1.18144 0.82322 0.88522 0.76929 1.90798 1.68720 1.32061 1.49692 1.45983 1.05726 1.10693 1.74474 1.21454 0.90576 0.84790 1.02299 1.22690 0.91621 0.99072 0.99958 0.90121 1.21588 0.87091 0.96852 0.92955 1.44475 1.02567 1.32225 1.53961 1.19089 0.88039 1.08354 1.20178 0.90453 1.24807 0.97188 0.98257 1.00252 1.69972 1.16550 1.26332 1.43950 0.86056 0.81552 0.78783 0.79427 1.20547 1.21780 1.21765 1.21214 0.90206 0.89435 0.93233 1.22443 0.98786 0.95244 0.96549 0.91381 1.21693 1.00402 1.01279 0.95820 1.21390 0.92465 0.98533 0.89720 0.91953 0.90450 0.91959 0.76392 0.85276 0.84407 0.84676 0.76395 0.91366 0.91123 0.96270 0.94708 0.93798 0.93305 0.94021 0.93619 0.92742 0.92716 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.70 59.85 0.64 1.08 16 2 N -0.73 -4.54 5.66 -68.04 -0.39 -4.92 16 3 C 0.56 5.73 7.77 -12.32 -0.10 5.64 16 4 O -0.53 -7.63 16.34 5.32 0.09 -7.54 16 5 C -0.15 -1.39 5.87 -105.02 -0.62 -2.01 16 6 C -0.07 -0.41 9.54 -39.10 -0.37 -0.78 16 7 C -0.13 -0.82 10.02 -39.70 -0.40 -1.22 16 8 C -0.06 -0.48 9.54 -39.10 -0.37 -0.85 16 9 C -0.14 -1.52 5.87 -105.02 -0.62 -2.14 16 10 C 0.55 7.71 7.77 -12.32 -0.10 7.61 16 11 O -0.53 -9.43 16.34 5.32 0.09 -9.35 16 12 N -0.72 -8.99 5.40 -61.25 -0.33 -9.32 16 13 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 14 C -0.11 -1.82 2.51 -88.47 -0.22 -2.04 16 15 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 16 C 0.14 2.75 6.56 -2.50 -0.02 2.73 16 17 N -0.61 -15.02 3.40 -170.03 -0.58 -15.59 16 18 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.18 4.33 4.97 -3.06 -0.02 4.31 16 27 C -0.11 -1.96 3.01 -88.78 -0.27 -2.23 16 28 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 29 C -0.13 -2.06 9.17 37.16 0.34 -1.72 16 30 C 0.00 -0.02 9.14 -38.78 -0.35 -0.37 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.18 6.85 -40.82 -0.28 0.90 16 35 H 0.13 0.33 6.39 -52.49 -0.34 0.00 16 36 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.14 0.86 6.39 -52.48 -0.34 0.53 16 38 H 0.40 4.12 6.46 -40.82 -0.26 3.85 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.09 8.03 -51.93 -0.42 0.68 16 41 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 44 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 45 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 49 H 0.15 2.06 7.23 -52.48 -0.38 1.68 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -35.89 400.83 -9.62 -45.51 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.36 Total: 1.37 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -2.73 Total: 3.15 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.72 Total: -55.97 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.17 Total: -16.89 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.89 -9.62 -45.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093208825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.368 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds