Wall clock time and date at job start Wed Apr 1 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99824 * 2 1 4 4 O 1.21551 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.47867 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.39700 * 120.07137 * 359.73249 * 5 3 2 7 7 C 1.38058 * 120.14345 * 179.71820 * 6 5 3 8 8 C 1.38104 * 120.29588 * 0.54784 * 7 6 5 9 9 C 1.39664 * 120.14113 * 359.72625 * 8 7 6 10 10 C 1.47868 * 120.06981 * 180.02562 * 9 8 7 11 11 O 1.21552 * 119.99574 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99834 * 359.97438 * 10 9 8 13 13 C 1.46503 * 119.99619 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46911 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.88694 * 54.30074 * 14 13 12 16 16 C 1.54916 * 111.00782 * 290.41705 * 14 13 12 17 17 N 1.47463 * 104.81216 * 204.94996 * 16 14 13 18 18 C 1.36937 * 125.62881 * 204.04966 * 17 16 14 19 19 H 1.08001 * 120.00065 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99879 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00183 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99816 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46928 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47168 * 119.99767 * 22 20 18 25 25 H 1.48503 * 109.46948 * 239.99631 * 22 20 18 26 26 C 1.47030 * 108.72559 * 24.07005 * 17 16 14 27 27 C 1.54326 * 107.26805 * 358.97589 * 26 17 16 28 28 H 1.08994 * 110.72248 * 96.16856 * 27 26 17 29 29 C 1.53000 * 110.86879 * 219.37440 * 27 26 17 30 30 C 1.39290 * 120.07477 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47391 * 300.00144 * 1 2 3 32 32 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47041 * 60.00328 * 1 2 3 34 34 H 0.97004 * 120.00104 * 179.97438 * 2 1 3 35 35 H 1.07996 * 119.93017 * 359.97438 * 6 5 3 36 36 H 1.08001 * 119.85438 * 180.27821 * 7 6 5 37 37 H 1.08003 * 119.92807 * 179.69915 * 8 7 6 38 38 H 0.96998 * 120.00706 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.47268 * 299.99670 * 13 12 10 40 40 H 1.08996 * 109.47271 * 59.99722 * 13 12 10 41 41 H 1.08997 * 110.36488 * 323.75876 * 16 14 13 42 42 H 1.09002 * 110.36308 * 86.08149 * 16 14 13 43 43 H 0.97003 * 119.99815 * 179.97438 * 21 20 18 44 44 H 1.08990 * 109.88295 * 239.55983 * 26 17 16 45 45 H 1.09000 * 110.00902 * 118.45978 * 26 17 16 46 46 H 1.09006 * 109.46956 * 173.61105 * 29 27 26 47 47 H 1.09003 * 109.46861 * 293.60542 * 29 27 26 48 48 H 1.08990 * 109.47617 * 53.60908 * 29 27 26 49 49 H 1.08011 * 120.14649 * 0.03168 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5311 2.2199 -0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3175 -0.0417 0.0068 7 6 5.6981 -0.0434 0.0014 8 6 6.3963 1.1481 0.0014 9 6 5.7088 2.3638 0.0009 10 6 6.4579 3.6387 0.0003 11 8 5.8582 4.6960 -0.0006 12 7 7.8056 3.6283 0.0006 13 6 8.5478 4.8914 -0.0006 14 6 10.0498 4.6003 0.0008 15 1 10.3188 3.9419 -0.8252 16 6 10.4981 4.0012 1.3572 17 7 11.9300 4.3375 1.4630 18 6 12.8546 3.6624 2.2144 19 1 12.5545 2.8029 2.7955 20 6 14.1775 4.0826 2.2290 21 7 14.5433 5.1296 1.5203 22 14 15.4386 3.1620 3.2545 23 1 14.7776 2.0307 3.9534 24 1 16.5102 2.6393 2.3692 25 1 16.0304 4.0845 4.2565 26 6 12.2006 5.5177 0.6289 27 6 10.8713 5.9158 -0.0465 28 1 10.3720 6.7027 0.5188 29 6 11.1053 6.3562 -1.4929 30 6 4.3155 2.3727 0.0000 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.9500 -0.8401 0.0004 35 1 3.7776 -0.9770 0.0115 36 1 6.2346 -0.9808 0.0017 37 1 7.4763 1.1398 0.0021 38 1 8.2842 2.7846 0.0017 39 1 8.2891 5.4640 -0.8912 40 1 8.2886 5.4660 0.8887 41 1 9.9404 4.4561 2.1757 42 1 10.3607 2.9199 1.3582 43 1 15.4676 5.4235 1.5309 44 1 12.9432 5.2727 -0.1302 45 1 12.5614 6.3381 1.2493 46 1 10.1454 6.5228 -1.9818 47 1 11.6831 7.2804 -1.5023 48 1 11.6540 5.5792 -2.0250 49 1 3.7790 3.3101 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093208825.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:39 Heat of formation + Delta-G solvation = -50.008754 kcal Electronic energy + Delta-G solvation = -29225.251361 eV Core-core repulsion = 25151.547517 eV Total energy + Delta-G solvation = -4073.703844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.59250 -40.78424 -39.68269 -38.83038 -36.14625 -35.80999 -34.74126 -32.81441 -32.52719 -32.13510 -30.63904 -28.07308 -27.75588 -26.72647 -25.25221 -24.54500 -23.62374 -22.32123 -21.63343 -21.41882 -20.71253 -19.67823 -18.78357 -17.78211 -17.51145 -17.20031 -16.93109 -16.66067 -16.48526 -16.30104 -15.91823 -15.61613 -15.41520 -15.22648 -14.79963 -14.78369 -14.60448 -14.36858 -14.15188 -14.08146 -13.47946 -13.43875 -13.22609 -13.20293 -13.10836 -12.90390 -12.84685 -12.67859 -12.46606 -12.38253 -11.89819 -11.83188 -11.58270 -11.44540 -11.36709 -11.24481 -10.98404 -10.69789 -10.39851 -10.26647 -10.02703 -9.95903 -8.87628 -7.82924 -5.18386 -0.41578 -0.03399 1.46930 1.48057 1.50627 1.58068 1.97047 2.01315 2.21963 2.50599 2.83475 3.35301 3.54017 3.58228 3.62421 3.79757 3.81804 3.93231 3.95933 4.03173 4.08296 4.33194 4.36299 4.42393 4.50362 4.59940 4.61407 4.61962 4.74232 4.81516 4.85075 4.88195 4.95464 4.97681 5.09248 5.14261 5.16360 5.18750 5.25122 5.32217 5.32785 5.36919 5.47127 5.49832 5.71607 5.72864 5.83454 6.21960 6.44946 6.46648 7.11521 7.12267 7.12945 7.80055 8.44699 9.27509 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.001973 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.162844 B =14190.084182 C =15361.376579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.552 3.448 4 O -0.586 6.586 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.120 4.120 8 C -0.053 4.053 9 C -0.155 4.155 10 C 0.553 3.447 11 O -0.583 6.583 12 N -0.706 5.706 13 C 0.143 3.857 14 C -0.090 4.090 15 H 0.094 0.906 16 C 0.137 3.863 17 N -0.628 5.628 18 C -0.238 4.238 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.952 5.952 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.297 1.297 26 C 0.193 3.807 27 C -0.103 4.103 28 H 0.071 0.929 29 C -0.128 4.128 30 C -0.026 4.026 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.420 0.580 35 H 0.175 0.825 36 H 0.180 0.820 37 H 0.156 0.844 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.015 0.985 42 H 0.054 0.946 43 H 0.245 0.755 44 H 0.018 0.982 45 H -0.002 1.002 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.156 -17.712 -6.878 29.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C 0.340 3.660 4 O -0.467 6.467 5 C -0.161 4.161 6 C -0.062 4.062 7 C -0.137 4.137 8 C -0.072 4.072 9 C -0.158 4.158 10 C 0.342 3.658 11 O -0.465 6.465 12 N -0.358 5.358 13 C 0.019 3.981 14 C -0.109 4.109 15 H 0.112 0.888 16 C 0.012 3.988 17 N -0.354 5.354 18 C -0.367 4.367 19 H 0.103 0.897 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.224 1.224 26 C 0.068 3.932 27 C -0.122 4.122 28 H 0.090 0.910 29 C -0.185 4.185 30 C -0.046 4.046 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.069 0.931 34 H 0.259 0.741 35 H 0.192 0.808 36 H 0.197 0.803 37 H 0.174 0.826 38 H 0.252 0.748 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.036 0.964 45 H 0.016 0.984 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.814 -16.253 -6.818 29.627 hybrid contribution 1.457 -0.117 0.764 1.649 sum -22.358 -16.370 -6.054 28.364 Atomic orbital electron populations 1.21745 0.78144 1.04732 1.01533 1.45586 1.08613 1.08087 1.74210 1.18546 0.87654 0.84122 0.75696 1.90788 1.70833 1.33260 1.51794 1.19837 0.92485 0.94753 1.09048 1.21927 0.95148 0.96913 0.92229 1.21574 0.93780 0.99222 0.99142 1.21928 1.01684 0.90993 0.92573 1.19784 0.93487 0.93505 1.09008 1.18600 0.82462 0.89041 0.75739 1.90770 1.69637 1.34040 1.52018 1.45808 1.05369 1.10697 1.73931 1.21206 0.89198 0.85562 1.02114 1.22479 0.92352 0.97731 0.98374 0.88773 1.21777 0.84233 0.98217 0.94594 1.44802 1.04505 1.32394 1.53727 1.19516 0.88768 1.08428 1.20003 0.89655 1.25662 0.99286 0.99388 1.01895 1.70202 1.16336 1.27953 1.45611 0.85022 0.78906 0.77824 0.77659 1.18686 1.21909 1.22449 1.20958 0.92552 0.87888 0.91841 1.22322 0.95847 0.96332 0.97747 0.91034 1.21639 1.01933 1.01022 0.93908 1.21203 0.93030 0.98333 0.92062 0.93225 0.86279 0.93131 0.74106 0.80771 0.80280 0.82601 0.74797 0.90623 0.92441 0.96700 0.92734 0.94556 0.96420 0.98416 0.90706 0.92846 0.93048 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.70 127.77 1.37 2.05 16 2 N -0.71 -7.20 5.66 -487.44 -2.76 -9.96 16 3 C 0.55 11.19 7.77 86.79 0.67 11.86 16 4 O -0.59 -18.07 16.34 -3.88 -0.06 -18.13 16 5 C -0.16 -2.82 5.87 -20.12 -0.12 -2.93 16 6 C -0.04 -0.35 9.54 22.58 0.22 -0.14 16 7 C -0.12 -0.87 10.02 22.20 0.22 -0.65 16 8 C -0.05 -0.69 9.54 22.58 0.22 -0.47 16 9 C -0.15 -3.39 5.87 -20.12 -0.12 -3.51 16 10 C 0.55 15.42 7.77 86.79 0.67 16.10 16 11 O -0.58 -21.57 16.34 -3.88 -0.06 -21.64 16 12 N -0.71 -16.63 5.40 -465.96 -2.52 -19.15 16 13 C 0.14 3.89 5.12 86.38 0.44 4.33 16 14 C -0.09 -2.74 2.51 -9.40 -0.02 -2.76 16 15 H 0.09 2.69 8.05 -2.38 -0.02 2.67 16 16 C 0.14 5.16 6.56 86.85 0.57 5.73 16 17 N -0.63 -31.37 3.40 -691.87 -2.35 -33.72 16 18 C -0.24 -13.04 10.28 84.03 0.86 -12.17 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 21 N -0.95 -57.14 10.31 21.65 0.22 -56.92 16 22 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 C 0.19 9.37 4.97 86.73 0.43 9.80 16 27 C -0.10 -3.62 3.01 -9.60 -0.03 -3.65 16 28 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 29 C -0.13 -3.75 9.17 71.98 0.66 -3.09 16 30 C -0.03 -0.64 9.14 22.79 0.21 -0.43 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.00 8.14 -2.39 -0.02 -0.01 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.42 0.68 6.85 -92.71 -0.64 0.04 16 35 H 0.18 -0.23 6.39 -2.91 -0.02 -0.25 16 36 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 37 H 0.16 1.30 6.39 -2.91 -0.02 1.29 16 38 H 0.41 7.35 6.46 -92.71 -0.60 6.75 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 41 H 0.02 0.59 7.96 -2.39 -0.02 0.57 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.02 0.96 7.02 -2.39 -0.02 0.94 16 45 H 0.00 -0.14 7.50 -2.39 -0.02 -0.15 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 49 H 0.11 3.54 7.23 -2.90 -0.02 3.51 16 Total: -1.00 -85.96 400.83 0.97 -84.99 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -0.25 Total: 10.69 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.72 Total: 16.61 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -7.40 Total: -119.74 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.13 Total: -39.77 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -85.96 0.97 -84.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093208825.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.985 kcal (2) G-P(sol) polarization free energy of solvation -85.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds