Wall clock time and date at job start Wed Apr 1 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.28520 * 2 1 4 4 C 1.54381 * 110.41212 * 237.81855 * 2 1 3 5 5 N 1.48553 * 104.59354 * 264.91376 * 4 2 1 6 6 C 1.46901 * 111.00150 * 200.95663 * 5 4 2 7 7 C 1.50701 * 109.47380 * 176.49038 * 6 5 4 8 8 O 1.21289 * 120.00055 * 6.05630 * 7 6 5 9 9 N 1.34776 * 120.00063 * 186.06506 * 7 6 5 10 10 C 1.37098 * 119.99907 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99790 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99799 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47495 * 90.00023 * 14 12 10 16 16 H 1.48506 * 109.47095 * 210.00067 * 14 12 10 17 17 H 1.48501 * 109.47296 * 329.99268 * 14 12 10 18 18 C 1.48561 * 104.22097 * 320.51523 * 5 4 2 19 19 C 1.54261 * 110.32466 * 122.12830 * 2 1 3 20 20 H 1.08997 * 110.32364 * 0.02562 * 19 2 1 21 21 C 1.52997 * 110.32420 * 237.89681 * 19 2 1 22 22 N 1.46497 * 109.47298 * 175.00270 * 21 19 2 23 23 C 1.34775 * 120.00176 * 180.02562 * 22 21 19 24 24 O 1.21554 * 120.00166 * 359.97438 * 23 22 21 25 25 C 1.47852 * 119.99928 * 179.97438 * 23 22 21 26 26 C 1.39576 * 120.14247 * 359.72304 * 25 23 22 27 27 C 1.37955 * 119.84937 * 179.74574 * 26 25 23 28 28 C 1.38359 * 120.14737 * 0.52976 * 27 26 25 29 29 C 1.38362 * 120.29030 * 359.74314 * 28 27 26 30 30 C 1.37958 * 120.14427 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47280 * 297.87219 * 1 2 3 32 32 H 1.08998 * 109.47276 * 57.87137 * 1 2 3 33 33 H 1.09000 * 109.47256 * 177.86671 * 1 2 3 34 34 H 1.09002 * 110.40863 * 23.68939 * 4 2 1 35 35 H 1.09000 * 110.41505 * 146.01046 * 4 2 1 36 36 H 1.08994 * 109.47253 * 296.49235 * 6 5 4 37 37 H 1.09000 * 109.46937 * 56.49214 * 6 5 4 38 38 H 0.97001 * 119.99563 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 40 40 H 1.08998 * 110.41164 * 280.70147 * 18 5 4 41 41 H 1.09000 * 110.41054 * 158.26294 * 18 5 4 42 42 H 1.09000 * 109.47745 * 54.99703 * 21 19 2 43 43 H 1.09003 * 109.46942 * 294.99876 * 21 19 2 44 44 H 0.97001 * 119.99850 * 359.97438 * 22 21 19 45 45 H 1.07996 * 120.07377 * 359.97438 * 26 25 23 46 46 H 1.07997 * 119.92649 * 180.26925 * 27 26 25 47 47 H 1.07995 * 119.86078 * 179.76151 * 28 27 26 48 48 H 1.08000 * 119.92753 * 179.97438 * 29 28 27 49 49 H 1.08005 * 120.07484 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7706 -1.2246 5 7 2.3184 -2.1457 -0.7212 6 6 3.2703 -2.8574 -1.5845 7 6 3.5647 -4.2135 -0.9968 8 8 2.9530 -4.5981 -0.0226 9 7 4.5078 -4.9990 -1.5536 10 6 4.7760 -6.2325 -1.0186 11 1 4.2318 -6.5745 -0.1507 12 6 5.7479 -7.0425 -1.5930 13 7 6.4098 -6.6264 -2.6493 14 14 6.1128 -8.7233 -0.8645 15 1 5.2407 -9.7404 -1.5049 16 1 7.5366 -9.0692 -1.1064 17 1 5.8515 -8.6967 0.5971 18 6 2.8828 -1.9400 0.6375 19 6 2.0658 -0.7693 1.2250 20 1 1.2388 -1.1473 1.8261 21 6 2.9653 0.1357 2.0691 22 7 3.3669 -0.5733 3.2866 23 6 4.1660 0.0328 4.1869 24 8 4.5539 1.1676 3.9885 25 6 4.5708 -0.6826 5.4158 26 6 4.1224 -1.9835 5.6494 27 6 4.5081 -2.6473 6.7956 28 6 5.3286 -2.0223 7.7178 29 6 5.7719 -0.7307 7.4951 30 6 5.3983 -0.0578 6.3501 31 1 -0.3634 0.4805 0.9085 32 1 -0.3634 0.5465 -0.8703 33 1 -0.3634 -1.0269 -0.0383 34 1 1.3242 -0.7867 -2.0208 35 1 2.9948 -0.3197 -1.5803 36 1 2.8396 -2.9780 -2.5784 37 1 4.1946 -2.2841 -1.6561 38 1 4.9968 -4.6915 -2.3328 39 1 7.0880 -7.1920 -3.0505 40 1 3.9378 -1.6735 0.5746 41 1 2.7518 -2.8366 1.2433 42 1 2.4204 1.0405 2.3385 43 1 3.8526 0.4033 1.4952 44 1 3.0571 -1.4787 3.4451 45 1 3.4780 -2.4708 4.9327 46 1 4.1654 -3.6556 6.9755 47 1 5.6245 -2.5449 8.6154 48 1 6.4118 -0.2483 8.2191 49 1 5.7454 0.9502 6.1772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101683106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:37 Heat of formation + Delta-G solvation = -45.233611 kcal Electronic energy + Delta-G solvation = -29795.281517 eV Core-core repulsion = 25721.784739 eV Total energy + Delta-G solvation = -4073.496778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.42463 -39.53336 -38.38522 -37.74567 -35.08375 -34.00810 -33.01844 -31.69450 -31.24412 -31.17348 -29.93309 -27.67390 -26.29100 -25.02633 -24.05979 -23.06706 -22.51857 -21.05721 -20.70785 -19.75913 -19.16237 -18.24654 -17.86249 -16.50548 -16.30385 -15.99350 -15.58377 -15.41330 -15.12913 -14.87003 -14.67997 -14.57913 -14.27713 -13.90817 -13.84056 -13.60942 -13.43759 -13.35670 -13.06062 -12.95953 -12.63540 -12.29382 -12.21447 -11.92493 -11.62384 -11.52035 -11.40256 -11.31748 -11.16402 -10.93006 -10.91680 -10.65478 -10.56261 -10.41096 -10.23960 -10.04480 -9.50565 -9.34968 -9.25009 -9.07733 -8.46775 -8.06079 -7.95534 -6.43724 -3.84628 0.62696 1.11158 2.72063 3.00840 3.15880 3.24693 3.29807 3.67124 3.88438 4.03386 4.22696 4.45345 4.54896 4.58182 4.63410 4.68645 4.73493 4.87978 5.10079 5.11233 5.15287 5.21189 5.23204 5.25070 5.35973 5.49550 5.53962 5.61440 5.67157 5.67968 5.72098 5.74517 5.88621 5.92861 5.97305 6.04033 6.05746 6.13029 6.16743 6.18066 6.24438 6.26450 6.33940 6.45769 6.61684 7.12183 7.22297 7.35428 7.52898 8.03827 8.06104 8.59387 9.15758 9.52215 10.03643 10.74051 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007077 B = 0.003158 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3955.745889 B = 8862.958233 C =12075.945249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.076 0.924 4 C 0.031 3.969 5 N -0.483 5.483 6 C 0.034 3.966 7 C 0.443 3.557 8 O -0.580 6.580 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.041 3.959 19 C -0.105 4.105 20 H 0.088 0.912 21 C 0.129 3.871 22 N -0.722 5.722 23 C 0.558 3.442 24 O -0.542 6.542 25 C -0.135 4.135 26 C -0.084 4.084 27 C -0.126 4.126 28 C -0.096 4.096 29 C -0.131 4.131 30 C -0.062 4.062 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.039 0.961 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.404 0.596 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.602 13.685 12.876 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.097 4.097 5 N -0.207 5.207 6 C -0.098 4.098 7 C 0.229 3.771 8 O -0.464 6.464 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.087 4.087 19 C -0.124 4.124 20 H 0.107 0.893 21 C 0.006 3.994 22 N -0.373 5.373 23 C 0.346 3.654 24 O -0.421 6.421 25 C -0.138 4.138 26 C -0.102 4.102 27 C -0.144 4.144 28 C -0.114 4.114 29 C -0.149 4.149 30 C -0.081 4.081 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.240 0.760 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.076 13.803 13.242 20.070 hybrid contribution 1.288 -0.758 -0.359 1.537 sum -4.788 13.045 12.882 18.949 Atomic orbital electron populations 1.21804 0.94054 1.02650 1.01140 1.21812 0.96603 0.98480 0.93577 0.90544 1.23259 0.99874 0.89284 0.97266 1.65174 1.40600 1.13144 1.01739 1.22081 0.94753 0.95201 0.97780 1.19694 0.83745 0.86671 0.87008 1.90474 1.52577 1.74865 1.28507 1.41873 1.33388 1.15997 1.28743 1.19684 1.18608 0.91907 1.12655 0.87924 1.25264 0.96355 1.00124 0.96190 1.69613 1.24900 1.38359 1.21386 0.85865 0.77461 0.81592 0.79414 1.20376 1.20933 1.19435 1.23272 0.95524 0.98314 0.91571 1.22326 0.98190 0.95558 0.96330 0.89337 1.21525 0.98434 0.94858 0.84603 1.45945 1.50883 1.19019 1.21496 1.18288 0.78229 0.85868 0.83037 1.90758 1.55366 1.18286 1.77650 1.19974 1.02276 0.95420 0.96152 1.21404 0.98120 0.93338 0.97366 1.21167 0.98587 1.00402 0.94231 1.21402 0.96116 0.94898 0.98987 1.21167 1.00849 0.95175 0.97661 1.21284 0.94375 1.00109 0.92300 0.92941 0.92765 0.91535 0.90008 0.94030 0.89125 0.93481 0.77501 0.91853 0.94315 0.87885 0.91204 0.91331 0.76040 0.85342 0.85160 0.85562 0.85361 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.91 37.16 0.33 -1.00 16 2 C -0.09 -0.90 3.30 -89.24 -0.29 -1.19 16 3 H 0.08 0.72 7.71 -51.93 -0.40 0.31 16 4 C 0.03 0.39 6.04 -2.19 -0.01 0.37 16 5 N -0.48 -7.78 5.18 -231.42 -1.20 -8.98 16 6 C 0.03 0.60 5.39 -4.97 -0.03 0.57 16 7 C 0.44 10.27 7.43 -10.98 -0.08 10.19 16 8 O -0.58 -15.06 14.01 5.55 0.08 -14.98 16 9 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 11 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 12 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 13 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 14 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C 0.04 0.63 4.93 -2.18 -0.01 0.62 16 19 C -0.10 -1.21 2.74 -89.24 -0.24 -1.45 16 20 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 21 C 0.13 1.49 4.79 -4.04 -0.02 1.47 16 22 N -0.72 -8.44 5.38 -61.25 -0.33 -8.77 16 23 C 0.56 7.52 7.77 -12.33 -0.10 7.43 16 24 O -0.54 -8.93 16.35 5.32 0.09 -8.84 16 25 C -0.14 -1.59 5.87 -104.97 -0.62 -2.20 16 26 C -0.08 -0.84 9.54 -39.19 -0.37 -1.22 16 27 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 28 C -0.10 -0.78 10.04 -39.49 -0.40 -1.18 16 29 C -0.13 -1.13 10.03 -39.64 -0.40 -1.53 16 30 C -0.06 -0.67 9.60 -39.19 -0.38 -1.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 35 H 0.04 0.49 7.92 -51.93 -0.41 0.08 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.05 0.78 7.98 -51.93 -0.41 0.36 16 38 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.04 0.63 7.56 -51.93 -0.39 0.23 16 41 H 0.10 1.86 6.53 -51.93 -0.34 1.52 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 44 H 0.40 4.15 6.44 -40.82 -0.26 3.89 16 45 H 0.13 1.12 6.41 -52.49 -0.34 0.78 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.13 1.44 7.65 -52.48 -0.40 1.03 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -32.94 401.73 -10.32 -43.26 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.40 Total: 13.89 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.25 Total: 0.43 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.86 Total: -55.66 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.16 Total: -23.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.94 -10.32 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101683106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.970 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds