Wall clock time and date at job start Wed Apr 1 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.28520 * 2 1 4 4 C 1.54381 * 110.41212 * 237.81855 * 2 1 3 5 5 N 1.48553 * 104.59354 * 264.91376 * 4 2 1 6 6 C 1.46901 * 111.00150 * 200.95663 * 5 4 2 7 7 C 1.50701 * 109.47380 * 176.49038 * 6 5 4 8 8 O 1.21289 * 120.00055 * 6.05630 * 7 6 5 9 9 N 1.34776 * 120.00063 * 186.06506 * 7 6 5 10 10 C 1.37098 * 119.99907 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99800 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99790 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99860 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99799 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47495 * 90.00023 * 14 12 10 16 16 H 1.48506 * 109.47095 * 210.00067 * 14 12 10 17 17 H 1.48501 * 109.47296 * 329.99268 * 14 12 10 18 18 C 1.48561 * 104.22097 * 320.51523 * 5 4 2 19 19 C 1.54261 * 110.32466 * 122.12830 * 2 1 3 20 20 H 1.08997 * 110.32364 * 0.02562 * 19 2 1 21 21 C 1.52997 * 110.32420 * 237.89681 * 19 2 1 22 22 N 1.46497 * 109.47298 * 175.00270 * 21 19 2 23 23 C 1.34775 * 120.00176 * 180.02562 * 22 21 19 24 24 O 1.21554 * 120.00166 * 359.97438 * 23 22 21 25 25 C 1.47852 * 119.99928 * 179.97438 * 23 22 21 26 26 C 1.39576 * 120.14247 * 359.72304 * 25 23 22 27 27 C 1.37955 * 119.84937 * 179.74574 * 26 25 23 28 28 C 1.38359 * 120.14737 * 0.52976 * 27 26 25 29 29 C 1.38362 * 120.29030 * 359.74314 * 28 27 26 30 30 C 1.37958 * 120.14427 * 359.97438 * 29 28 27 31 31 H 1.09006 * 109.47280 * 297.87219 * 1 2 3 32 32 H 1.08998 * 109.47276 * 57.87137 * 1 2 3 33 33 H 1.09000 * 109.47256 * 177.86671 * 1 2 3 34 34 H 1.09002 * 110.40863 * 23.68939 * 4 2 1 35 35 H 1.09000 * 110.41505 * 146.01046 * 4 2 1 36 36 H 1.08994 * 109.47253 * 296.49235 * 6 5 4 37 37 H 1.09000 * 109.46937 * 56.49214 * 6 5 4 38 38 H 0.97001 * 119.99563 * 359.97438 * 9 7 6 39 39 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 40 40 H 1.08998 * 110.41164 * 280.70147 * 18 5 4 41 41 H 1.09000 * 110.41054 * 158.26294 * 18 5 4 42 42 H 1.09000 * 109.47745 * 54.99703 * 21 19 2 43 43 H 1.09003 * 109.46942 * 294.99876 * 21 19 2 44 44 H 0.97001 * 119.99850 * 359.97438 * 22 21 19 45 45 H 1.07996 * 120.07377 * 359.97438 * 26 25 23 46 46 H 1.07997 * 119.92649 * 180.26925 * 27 26 25 47 47 H 1.07995 * 119.86078 * 179.76151 * 28 27 26 48 48 H 1.08000 * 119.92753 * 179.97438 * 29 28 27 49 49 H 1.08005 * 120.07484 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7706 -1.2246 5 7 2.3184 -2.1457 -0.7212 6 6 3.2703 -2.8574 -1.5845 7 6 3.5647 -4.2135 -0.9968 8 8 2.9530 -4.5981 -0.0226 9 7 4.5078 -4.9990 -1.5536 10 6 4.7760 -6.2325 -1.0186 11 1 4.2318 -6.5745 -0.1507 12 6 5.7479 -7.0425 -1.5930 13 7 6.4098 -6.6264 -2.6493 14 14 6.1128 -8.7233 -0.8645 15 1 5.2407 -9.7404 -1.5049 16 1 7.5366 -9.0692 -1.1064 17 1 5.8515 -8.6967 0.5971 18 6 2.8828 -1.9400 0.6375 19 6 2.0658 -0.7693 1.2250 20 1 1.2388 -1.1473 1.8261 21 6 2.9653 0.1357 2.0691 22 7 3.3669 -0.5733 3.2866 23 6 4.1660 0.0328 4.1869 24 8 4.5539 1.1676 3.9885 25 6 4.5708 -0.6826 5.4158 26 6 4.1224 -1.9835 5.6494 27 6 4.5081 -2.6473 6.7956 28 6 5.3286 -2.0223 7.7178 29 6 5.7719 -0.7307 7.4951 30 6 5.3983 -0.0578 6.3501 31 1 -0.3634 0.4805 0.9085 32 1 -0.3634 0.5465 -0.8703 33 1 -0.3634 -1.0269 -0.0383 34 1 1.3242 -0.7867 -2.0208 35 1 2.9948 -0.3197 -1.5803 36 1 2.8396 -2.9780 -2.5784 37 1 4.1946 -2.2841 -1.6561 38 1 4.9968 -4.6915 -2.3328 39 1 7.0880 -7.1920 -3.0505 40 1 3.9378 -1.6735 0.5746 41 1 2.7518 -2.8366 1.2433 42 1 2.4204 1.0405 2.3385 43 1 3.8526 0.4033 1.4952 44 1 3.0571 -1.4787 3.4451 45 1 3.4780 -2.4708 4.9327 46 1 4.1654 -3.6556 6.9755 47 1 5.6245 -2.5449 8.6154 48 1 6.4118 -0.2483 8.2191 49 1 5.7454 0.9502 6.1772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101683106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:36 Heat of formation + Delta-G solvation = -68.154043 kcal Electronic energy + Delta-G solvation = -29796.275421 eV Core-core repulsion = 25721.784739 eV Total energy + Delta-G solvation = -4074.490683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.41309 -40.75551 -39.59333 -39.08478 -36.26774 -35.87328 -34.21862 -33.24735 -32.51272 -31.90869 -30.90508 -29.10455 -27.29783 -26.69623 -25.16005 -24.07572 -23.35067 -22.15010 -21.72079 -21.00042 -20.65404 -19.87196 -19.11220 -17.83906 -17.34700 -17.10617 -16.72852 -16.63459 -16.43199 -16.24656 -15.90630 -15.72111 -15.48815 -15.39537 -14.97114 -14.67558 -14.51365 -14.26643 -14.17464 -13.97580 -13.84158 -13.61915 -13.44503 -13.35017 -12.95689 -12.72151 -12.62175 -12.44299 -12.40372 -12.20269 -12.12480 -12.04510 -11.84449 -11.64881 -11.57917 -11.42749 -11.07937 -10.32033 -10.26476 -10.01286 -9.98662 -9.90307 -9.37791 -8.47059 -5.95683 -0.17812 0.38116 1.37386 1.41051 1.53642 1.78987 2.04101 2.06761 2.27934 2.83863 2.87227 3.19861 3.28996 3.54286 3.61237 3.72267 3.82000 3.89613 3.98922 4.21569 4.21988 4.24947 4.29933 4.32636 4.41735 4.43640 4.49858 4.52231 4.61826 4.66546 4.72783 4.75291 4.83894 4.95158 5.02409 5.03568 5.13465 5.18558 5.26794 5.28852 5.36773 5.40499 5.41921 5.47870 5.50345 5.84831 5.91875 5.93998 6.08620 6.38107 6.59646 7.05191 7.12160 7.55391 8.10494 8.70564 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007077 B = 0.003158 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3955.745889 B = 8862.958233 C =12075.945249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.097 0.903 4 C 0.031 3.969 5 N -0.501 5.501 6 C 0.045 3.955 7 C 0.442 3.558 8 O -0.611 6.611 9 N -0.575 5.575 10 C -0.331 4.331 11 H 0.081 0.919 12 C -0.014 4.014 13 N -0.922 5.922 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.045 3.955 19 C -0.089 4.089 20 H 0.094 0.906 21 C 0.134 3.866 22 N -0.716 5.716 23 C 0.555 3.445 24 O -0.580 6.580 25 C -0.159 4.159 26 C -0.092 4.092 27 C -0.132 4.132 28 C -0.090 4.090 29 C -0.129 4.129 30 C -0.078 4.078 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.277 0.723 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.409 0.591 45 H 0.135 0.865 46 H 0.151 0.849 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 13.893 13.612 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 H 0.115 0.885 4 C -0.097 4.097 5 N -0.225 5.225 6 C -0.087 4.087 7 C 0.229 3.771 8 O -0.497 6.497 9 N -0.212 5.212 10 C -0.460 4.460 11 H 0.099 0.901 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.816 3.184 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.083 4.083 19 C -0.108 4.108 20 H 0.112 0.888 21 C 0.011 3.989 22 N -0.368 5.368 23 C 0.344 3.656 24 O -0.462 6.462 25 C -0.162 4.162 26 C -0.111 4.111 27 C -0.150 4.150 28 C -0.108 4.108 29 C -0.147 4.147 30 C -0.097 4.097 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.247 0.753 45 H 0.152 0.848 46 H 0.168 0.832 47 H 0.175 0.825 48 H 0.172 0.828 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.412 14.013 13.955 20.790 hybrid contribution 1.362 -0.820 -0.547 1.681 sum -5.050 13.193 13.408 19.476 Atomic orbital electron populations 1.21769 0.92957 1.01914 1.02556 1.21853 0.97420 0.98930 0.91744 0.88528 1.23385 1.00756 0.87161 0.98362 1.65155 1.39924 1.15573 1.01821 1.21960 0.96166 0.92194 0.98376 1.20664 0.82206 0.88095 0.86139 1.90454 1.53335 1.76050 1.29844 1.41953 1.34294 1.15875 1.29127 1.19665 1.19759 0.93588 1.13000 0.90097 1.26052 0.95626 1.03333 0.96376 1.69680 1.25085 1.39594 1.21990 0.84934 0.77752 0.77232 0.78491 1.19625 1.19720 1.19534 1.23117 0.95457 0.98363 0.91390 1.22199 0.97584 0.94240 0.96804 0.88774 1.21498 0.97986 0.95151 0.84310 1.45957 1.50301 1.19230 1.21273 1.18643 0.77824 0.85526 0.83655 1.90721 1.56965 1.19862 1.78622 1.19978 1.03896 0.96306 0.96012 1.21556 0.98402 0.92878 0.98275 1.21503 0.98449 1.01288 0.93763 1.21811 0.94805 0.94615 0.99600 1.21486 1.00612 0.95448 0.97165 1.21406 0.94856 1.00199 0.93244 0.91711 0.91232 0.93306 0.88681 0.93190 0.87203 0.92026 0.77202 0.91363 0.95633 0.91181 0.90096 0.92500 0.75342 0.84751 0.83173 0.82479 0.82771 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.91 71.98 0.64 -1.60 16 2 C -0.08 -1.52 3.30 -9.90 -0.03 -1.55 16 3 H 0.10 1.51 7.71 -2.39 -0.02 1.50 16 4 C 0.03 0.70 6.04 86.45 0.52 1.22 16 5 N -0.50 -15.84 5.18 -886.07 -4.59 -20.44 16 6 C 0.04 1.57 5.39 85.56 0.46 2.03 16 7 C 0.44 20.91 7.43 87.66 0.65 21.56 16 8 O -0.61 -32.80 14.01 -3.06 -0.04 -32.84 16 9 N -0.58 -29.57 5.29 -306.99 -1.62 -31.20 16 10 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 13 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 14 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.04 1.40 4.93 86.45 0.43 1.82 16 19 C -0.09 -1.99 2.74 -9.90 -0.03 -2.02 16 20 H 0.09 2.04 7.71 -2.39 -0.02 2.02 16 21 C 0.13 3.04 4.79 86.38 0.41 3.46 16 22 N -0.72 -17.20 5.38 -465.97 -2.51 -19.70 16 23 C 0.55 15.52 7.77 86.79 0.67 16.19 16 24 O -0.58 -19.87 16.35 -3.88 -0.06 -19.93 16 25 C -0.16 -3.83 5.87 -20.09 -0.12 -3.95 16 26 C -0.09 -1.86 9.54 22.53 0.21 -1.65 16 27 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 28 C -0.09 -1.27 10.04 22.33 0.22 -1.05 16 29 C -0.13 -2.05 10.03 22.23 0.22 -1.83 16 30 C -0.08 -1.70 9.60 22.53 0.22 -1.49 16 31 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.93 7.86 -2.39 -0.02 1.91 16 35 H 0.05 1.07 7.92 -2.39 -0.02 1.05 16 36 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.06 1.99 7.98 -2.39 -0.02 1.97 16 38 H 0.39 19.47 7.90 -92.71 -0.73 18.74 16 39 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.03 0.85 7.56 -2.39 -0.02 0.83 16 41 H 0.07 2.65 6.53 -2.39 -0.02 2.63 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.45 7.98 -2.39 -0.02 1.43 16 44 H 0.41 8.76 6.44 -92.71 -0.60 8.16 16 45 H 0.13 2.39 6.41 -2.91 -0.02 2.38 16 46 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 47 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 48 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 49 H 0.13 2.86 7.65 -2.91 -0.02 2.84 16 Total: -1.00 -73.10 401.73 -0.88 -73.98 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -0.35 Total: 44.07 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.99 Total: 11.06 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -8.44 Total: -121.08 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.11 Total: -52.77 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.10 -0.88 -73.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101683106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.822 kcal (2) G-P(sol) polarization free energy of solvation -73.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds