Wall clock time and date at job start Wed Apr 1 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 C 1.50701 * 109.47202 * 119.99396 * 2 1 3 5 5 C 1.38654 * 120.78824 * 73.90499 * 4 2 1 6 6 C 1.38205 * 119.16389 * 179.75861 * 5 4 2 7 7 N 1.31866 * 120.76176 * 0.52850 * 6 5 4 8 8 C 1.31873 * 121.72857 * 359.74592 * 7 6 5 9 9 C 1.38204 * 120.76188 * 359.97438 * 8 7 6 10 10 N 1.46497 * 109.47227 * 239.99532 * 2 1 3 11 11 C 1.46495 * 120.00178 * 306.27999 * 10 2 1 12 12 C 1.34775 * 119.99682 * 126.28103 * 10 2 1 13 13 O 1.21351 * 120.00629 * 4.02199 * 12 10 2 14 14 C 1.49452 * 119.99836 * 184.02170 * 12 10 2 15 15 O 1.21346 * 119.99807 * 6.69141 * 14 12 10 16 16 N 1.34777 * 120.00059 * 186.68910 * 14 12 10 17 17 C 1.46931 * 120.63003 * 6.29049 * 16 14 12 18 18 C 1.53196 * 108.77206 * 233.58095 * 17 16 14 19 19 C 1.53036 * 109.31252 * 305.36222 * 18 17 16 20 20 C 1.53046 * 109.53950 * 61.36917 * 19 18 17 21 21 H 1.09002 * 109.49525 * 58.57690 * 20 19 18 22 22 C 1.50688 * 109.49910 * 178.68039 * 20 19 18 23 23 H 1.07997 * 120.00494 * 359.97438 * 22 20 19 24 24 C 1.37886 * 120.00161 * 179.97438 * 22 20 19 25 25 N 1.31515 * 119.99565 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00145 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47066 * 90.00250 * 26 24 22 28 28 H 1.48500 * 109.47111 * 209.99795 * 26 24 22 29 29 H 1.48500 * 109.46904 * 330.00295 * 26 24 22 30 30 C 1.46928 * 120.63183 * 186.00362 * 16 14 12 31 31 H 1.09000 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46656 * 60.00506 * 1 2 3 33 33 H 1.09005 * 109.46807 * 300.00309 * 1 2 3 34 34 H 1.08004 * 120.41927 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.61994 * 180.25807 * 6 5 4 36 36 H 1.08000 * 119.61790 * 179.97438 * 8 7 6 37 37 H 1.08002 * 120.41725 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.46945 * 24.74024 * 11 10 2 39 39 H 1.09005 * 109.47137 * 144.73317 * 11 10 2 40 40 H 1.08994 * 109.47482 * 264.74106 * 11 10 2 41 41 H 1.08993 * 109.58302 * 353.36869 * 17 16 14 42 42 H 1.08997 * 109.58846 * 113.65452 * 17 16 14 43 43 H 1.09005 * 109.49649 * 65.31809 * 18 17 16 44 44 H 1.08998 * 109.49464 * 185.40845 * 18 17 16 45 45 H 1.08998 * 109.45876 * 181.38288 * 19 18 17 46 46 H 1.08990 * 109.46343 * 301.35993 * 19 18 17 47 47 H 0.97002 * 119.99853 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.58700 * 246.20418 * 30 16 14 49 49 H 1.09000 * 109.58705 * 6.62966 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.9576 -2.0910 1.3333 6 6 2.4330 -2.7081 2.4749 7 7 2.9430 -1.9987 3.4625 8 6 3.0249 -0.6839 3.4018 9 6 2.5750 0.0017 2.2893 10 7 2.0184 -0.6907 -1.1961 11 6 1.5548 -2.0468 -1.4994 12 6 2.8942 -0.0784 -2.0174 13 8 3.3343 1.0150 -1.7287 14 6 3.3234 -0.7461 -3.2837 15 8 2.7946 -1.7808 -3.6334 16 7 4.2977 -0.1990 -4.0372 17 6 5.0417 0.9754 -3.5616 18 6 4.9722 2.0695 -4.6316 19 6 5.4714 1.5066 -5.9643 20 6 4.5717 0.3476 -6.3996 21 1 3.5444 0.6999 -6.4931 22 6 5.0446 -0.1849 -7.7275 23 1 5.9010 0.2589 -8.2133 24 6 4.3839 -1.2388 -8.3226 25 7 3.3406 -1.7788 -7.7313 26 14 4.9696 -1.8984 -9.9691 27 1 5.9676 -2.9749 -9.7444 28 1 3.8130 -2.4453 -10.7231 29 1 5.5939 -0.7995 -10.7488 30 6 4.6404 -0.7694 -5.3472 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.5372 -2.6772 0.5295 35 1 2.3823 -3.7834 2.5609 36 1 3.4485 -0.1366 4.2309 37 1 2.6452 1.0786 2.2453 38 1 0.5831 -2.2113 -1.0336 39 1 1.4651 -2.1672 -2.5791 40 1 2.2710 -2.7710 -1.1113 41 1 4.5958 1.3402 -2.6364 42 1 6.0815 0.7015 -3.3830 43 1 3.9411 2.4056 -4.7419 44 1 5.5993 2.9099 -4.3338 45 1 5.4462 2.2901 -6.7216 46 1 6.4939 1.1480 -5.8468 47 1 2.8760 -2.5205 -8.1496 48 1 5.6488 -1.1820 -5.3136 49 1 3.9297 -1.5561 -5.6004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118503366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:42 Heat of formation + Delta-G solvation = 3.492936 kcal Electronic energy + Delta-G solvation = -31208.994828 eV Core-core repulsion = 27137.610991 eV Total energy + Delta-G solvation = -4071.383836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.12581 -40.23725 -38.49431 -37.23796 -36.46449 -33.46253 -33.01574 -31.77390 -31.47205 -30.41926 -29.76383 -27.41891 -26.13213 -25.05927 -24.43541 -23.63666 -22.97135 -21.82004 -20.89742 -19.71345 -18.66374 -17.32640 -17.12796 -17.00531 -16.29543 -16.11325 -15.86161 -15.63947 -15.43352 -14.70358 -14.60094 -14.29521 -14.17174 -13.83483 -13.81180 -13.74425 -13.47058 -13.17149 -12.81090 -12.67271 -12.56943 -12.51098 -12.31546 -12.11582 -11.80120 -11.74815 -11.47462 -11.30243 -11.00300 -10.67301 -10.50475 -10.28243 -10.02321 -9.92615 -9.80118 -9.72952 -9.39998 -9.20307 -9.14997 -8.92348 -8.50550 -8.36766 -7.87644 -6.05517 -4.13221 0.88492 0.92609 1.69456 2.49540 3.27923 3.35360 3.37957 3.51405 3.57561 3.77003 4.15929 4.22789 4.38766 4.46976 4.55698 4.74786 4.86136 4.91126 4.92198 5.02987 5.25268 5.29969 5.38363 5.45289 5.52479 5.54871 5.61654 5.65778 5.68399 5.81164 5.86414 5.96980 6.09219 6.16248 6.27607 6.36713 6.43262 6.50228 6.57240 6.68606 6.84517 6.95264 6.99308 7.08675 7.16525 7.54467 7.71532 7.77072 7.86956 7.92426 8.10896 8.31594 8.52579 8.90633 9.52332 11.00217 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.002690 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.450761 B =10405.416637 C =11020.717590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.115 0.885 4 C -0.049 4.049 5 C -0.171 4.171 6 C 0.098 3.902 7 N -0.488 5.488 8 C 0.097 3.903 9 C -0.160 4.160 10 N -0.581 5.581 11 C 0.040 3.960 12 C 0.514 3.486 13 O -0.514 6.514 14 C 0.498 3.502 15 O -0.517 6.517 16 N -0.563 5.563 17 C 0.048 3.952 18 C -0.127 4.127 19 C -0.114 4.114 20 C 0.042 3.958 21 H 0.030 0.970 22 C -0.519 4.519 23 H 0.059 0.941 24 C 0.062 3.938 25 N -0.883 5.883 26 Si 0.894 3.106 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.108 3.892 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.058 0.942 41 H 0.144 0.856 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.264 0.736 48 H 0.048 0.952 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 2.518 19.642 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.133 0.867 4 C -0.058 4.058 5 C -0.190 4.190 6 C -0.059 4.059 7 N -0.197 5.197 8 C -0.059 4.059 9 C -0.181 4.181 10 N -0.314 5.314 11 C -0.101 4.101 12 C 0.299 3.701 13 O -0.392 6.392 14 C 0.279 3.721 15 O -0.396 6.396 16 N -0.294 5.294 17 C -0.073 4.073 18 C -0.165 4.165 19 C -0.152 4.152 20 C 0.023 3.977 21 H 0.048 0.952 22 C -0.557 4.557 23 H 0.077 0.923 24 C -0.140 4.140 25 N -0.520 5.520 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.011 4.011 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.766 1.963 20.286 20.931 hybrid contribution 0.115 -0.021 -1.660 1.664 sum -4.651 1.942 18.626 19.296 Atomic orbital electron populations 1.22143 0.92893 1.03224 1.03269 1.20067 0.94863 0.97405 0.81008 0.86726 1.20572 0.95614 0.94301 0.95289 1.22476 1.01521 0.95050 1.00002 1.22783 0.93757 1.00341 0.89006 1.67666 1.14247 1.08184 1.29588 1.22752 0.95892 0.90225 0.97068 1.22054 0.99858 1.01606 0.94544 1.47781 1.43606 1.17278 1.22737 1.22904 0.98791 0.80861 1.07549 1.20838 0.78941 0.85555 0.84788 1.90279 1.53598 1.21168 1.74171 1.19664 0.82215 0.85472 0.84737 1.90550 1.54410 1.22805 1.71807 1.48486 1.32239 1.29189 1.19531 1.23106 0.96626 0.85869 1.01710 1.21851 1.01231 0.97016 0.96397 1.21673 0.99641 0.99193 0.94651 1.19044 0.95605 0.90266 0.92832 0.95211 1.21097 1.14423 1.16571 1.03648 0.92254 1.25056 0.94719 0.96612 0.97648 1.69871 1.19328 1.24276 1.38565 0.86568 0.78293 0.79158 0.83845 1.20619 1.21183 1.19911 1.22605 1.00839 1.00307 0.77389 0.91545 0.90992 0.90882 0.83782 0.82708 0.82697 0.84555 0.91357 0.85126 0.92310 0.84006 0.92687 0.92335 0.92255 0.93039 0.93237 0.92645 0.93328 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.00 37.16 0.33 -0.94 16 2 C 0.17 1.76 2.95 -69.08 -0.20 1.55 16 3 H 0.11 1.26 6.81 -51.93 -0.35 0.90 16 4 C -0.05 -0.49 4.97 -104.32 -0.52 -1.00 16 5 C -0.17 -1.64 8.85 -39.44 -0.35 -1.99 16 6 C 0.10 0.95 11.18 -17.55 -0.20 0.76 16 7 N -0.49 -5.37 10.36 -13.25 -0.14 -5.51 16 8 C 0.10 0.91 11.18 -17.55 -0.20 0.72 16 9 C -0.16 -1.46 9.77 -39.44 -0.39 -1.85 16 10 N -0.58 -7.53 2.73 -175.77 -0.48 -8.01 16 11 C 0.04 0.47 7.54 59.84 0.45 0.92 16 12 C 0.51 8.38 7.63 -11.58 -0.09 8.29 16 13 O -0.51 -8.61 12.45 5.50 0.07 -8.54 16 14 C 0.50 9.73 7.64 -11.58 -0.09 9.64 16 15 O -0.52 -10.95 12.53 5.50 0.07 -10.88 16 16 N -0.56 -11.54 2.97 -173.00 -0.51 -12.05 16 17 C 0.05 0.86 6.27 -3.71 -0.02 0.84 16 18 C -0.13 -2.23 6.08 -26.61 -0.16 -2.40 16 19 C -0.11 -2.33 5.10 -26.69 -0.14 -2.46 16 20 C 0.04 1.02 2.26 -91.43 -0.21 0.82 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 C -0.52 -13.88 8.56 -34.44 -0.29 -14.17 16 23 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 24 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 25 N -0.88 -24.94 11.41 55.43 0.63 -24.31 16 26 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 30 C 0.11 2.58 5.41 -3.48 -0.02 2.56 16 31 H 0.07 0.50 6.42 -51.93 -0.33 0.16 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.14 1.21 4.42 -52.48 -0.23 0.98 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.14 0.98 8.05 -52.49 -0.42 0.55 16 38 H 0.07 0.60 5.44 -51.93 -0.28 0.31 16 39 H 0.13 1.94 4.93 -52.93 -0.26 1.68 16 40 H 0.06 0.67 7.00 -51.93 -0.36 0.30 16 41 H 0.14 2.45 3.76 -56.84 -0.21 2.23 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.12 3.34 5.19 -51.93 -0.27 3.07 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -30.74 380.48 -8.75 -39.49 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.92 Total: 5.32 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.18 Total: 2.87 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.50 Total: -49.88 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.14 Total: -19.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.74 -8.75 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118503366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.982 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds