Wall clock time and date at job start Wed Apr 1 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 C 1.50701 * 109.47202 * 119.99396 * 2 1 3 5 5 C 1.38654 * 120.78824 * 73.90499 * 4 2 1 6 6 C 1.38205 * 119.16389 * 179.75861 * 5 4 2 7 7 N 1.31866 * 120.76176 * 0.52850 * 6 5 4 8 8 C 1.31873 * 121.72857 * 359.74592 * 7 6 5 9 9 C 1.38204 * 120.76188 * 359.97438 * 8 7 6 10 10 N 1.46497 * 109.47227 * 239.99532 * 2 1 3 11 11 C 1.46495 * 120.00178 * 306.27999 * 10 2 1 12 12 C 1.34775 * 119.99682 * 126.28103 * 10 2 1 13 13 O 1.21351 * 120.00629 * 4.02199 * 12 10 2 14 14 C 1.49452 * 119.99836 * 184.02170 * 12 10 2 15 15 O 1.21346 * 119.99807 * 6.69141 * 14 12 10 16 16 N 1.34777 * 120.00059 * 186.68910 * 14 12 10 17 17 C 1.46931 * 120.63003 * 6.29049 * 16 14 12 18 18 C 1.53196 * 108.77206 * 233.58095 * 17 16 14 19 19 C 1.53036 * 109.31252 * 305.36222 * 18 17 16 20 20 C 1.53046 * 109.53950 * 61.36917 * 19 18 17 21 21 H 1.09002 * 109.49525 * 58.57690 * 20 19 18 22 22 C 1.50688 * 109.49910 * 178.68039 * 20 19 18 23 23 H 1.07997 * 120.00494 * 359.97438 * 22 20 19 24 24 C 1.37886 * 120.00161 * 179.97438 * 22 20 19 25 25 N 1.31515 * 119.99565 * 0.02562 * 24 22 20 26 26 Si 1.86800 * 120.00145 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47066 * 90.00250 * 26 24 22 28 28 H 1.48500 * 109.47111 * 209.99795 * 26 24 22 29 29 H 1.48500 * 109.46904 * 330.00295 * 26 24 22 30 30 C 1.46928 * 120.63183 * 186.00362 * 16 14 12 31 31 H 1.09000 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46656 * 60.00506 * 1 2 3 33 33 H 1.09005 * 109.46807 * 300.00309 * 1 2 3 34 34 H 1.08004 * 120.41927 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.61994 * 180.25807 * 6 5 4 36 36 H 1.08000 * 119.61790 * 179.97438 * 8 7 6 37 37 H 1.08002 * 120.41725 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.46945 * 24.74024 * 11 10 2 39 39 H 1.09005 * 109.47137 * 144.73317 * 11 10 2 40 40 H 1.08994 * 109.47482 * 264.74106 * 11 10 2 41 41 H 1.08993 * 109.58302 * 353.36869 * 17 16 14 42 42 H 1.08997 * 109.58846 * 113.65452 * 17 16 14 43 43 H 1.09005 * 109.49649 * 65.31809 * 18 17 16 44 44 H 1.08998 * 109.49464 * 185.40845 * 18 17 16 45 45 H 1.08998 * 109.45876 * 181.38288 * 19 18 17 46 46 H 1.08990 * 109.46343 * 301.35993 * 19 18 17 47 47 H 0.97002 * 119.99853 * 180.02562 * 25 24 22 48 48 H 1.09003 * 109.58700 * 246.20418 * 30 16 14 49 49 H 1.09000 * 109.58705 * 6.62966 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.9576 -2.0910 1.3333 6 6 2.4330 -2.7081 2.4749 7 7 2.9430 -1.9987 3.4625 8 6 3.0249 -0.6839 3.4018 9 6 2.5750 0.0017 2.2893 10 7 2.0184 -0.6907 -1.1961 11 6 1.5548 -2.0468 -1.4994 12 6 2.8942 -0.0784 -2.0174 13 8 3.3343 1.0150 -1.7287 14 6 3.3234 -0.7461 -3.2837 15 8 2.7946 -1.7808 -3.6334 16 7 4.2977 -0.1990 -4.0372 17 6 5.0417 0.9754 -3.5616 18 6 4.9722 2.0695 -4.6316 19 6 5.4714 1.5066 -5.9643 20 6 4.5717 0.3476 -6.3996 21 1 3.5444 0.6999 -6.4931 22 6 5.0446 -0.1849 -7.7275 23 1 5.9010 0.2589 -8.2133 24 6 4.3839 -1.2388 -8.3226 25 7 3.3406 -1.7788 -7.7313 26 14 4.9696 -1.8984 -9.9691 27 1 5.9676 -2.9749 -9.7444 28 1 3.8130 -2.4453 -10.7231 29 1 5.5939 -0.7995 -10.7488 30 6 4.6404 -0.7694 -5.3472 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.5372 -2.6772 0.5295 35 1 2.3823 -3.7834 2.5609 36 1 3.4485 -0.1366 4.2309 37 1 2.6452 1.0786 2.2453 38 1 0.5831 -2.2113 -1.0336 39 1 1.4651 -2.1672 -2.5791 40 1 2.2710 -2.7710 -1.1113 41 1 4.5958 1.3402 -2.6364 42 1 6.0815 0.7015 -3.3830 43 1 3.9411 2.4056 -4.7419 44 1 5.5993 2.9099 -4.3338 45 1 5.4462 2.2901 -6.7216 46 1 6.4939 1.1480 -5.8468 47 1 2.8760 -2.5205 -8.1496 48 1 5.6488 -1.1820 -5.3136 49 1 3.9297 -1.5561 -5.6004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118503366.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:41 Heat of formation + Delta-G solvation = -14.750376 kcal Electronic energy + Delta-G solvation = -31209.785917 eV Core-core repulsion = 27137.610991 eV Total energy + Delta-G solvation = -4072.174926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30555 -41.19465 -39.85597 -38.71300 -37.68462 -35.23928 -34.08369 -33.42892 -32.17599 -31.58291 -31.15922 -28.47996 -27.65657 -26.81485 -25.47974 -24.39029 -24.16563 -23.48463 -22.07237 -21.01808 -20.22603 -18.68468 -18.41597 -17.95828 -17.89138 -17.42576 -16.88476 -16.75172 -16.54452 -16.47251 -15.71043 -15.61076 -15.45724 -15.04795 -14.87181 -14.72872 -14.56976 -14.46933 -14.44390 -14.12972 -13.84298 -13.53509 -13.49897 -13.35450 -13.09090 -12.90505 -12.82772 -12.54586 -12.40770 -12.31174 -12.18305 -12.10303 -11.72080 -11.34579 -11.05982 -10.95005 -10.66264 -10.56670 -10.55078 -10.09858 -10.06167 -9.73992 -9.53264 -8.12523 -6.28303 0.15921 0.19753 0.32020 1.26433 1.42045 1.42602 1.52932 2.09485 2.37429 2.43888 2.86156 3.09868 3.17576 3.40599 3.60298 3.78599 4.00680 4.03331 4.16360 4.16806 4.17858 4.24265 4.28421 4.35721 4.56477 4.57310 4.63818 4.68212 4.71850 4.75521 4.80152 4.84621 4.91638 4.96252 5.03134 5.09698 5.15686 5.19126 5.23162 5.27407 5.32874 5.36892 5.54872 5.59189 5.75467 5.83684 5.85601 5.94385 6.27712 6.39589 6.65912 6.82174 6.97947 7.01608 7.41198 8.91639 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.002690 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.450761 B =10405.416637 C =11020.717590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.111 0.889 4 C -0.059 4.059 5 C -0.175 4.175 6 C 0.088 3.912 7 N -0.512 5.512 8 C 0.090 3.910 9 C -0.161 4.161 10 N -0.569 5.569 11 C 0.041 3.959 12 C 0.518 3.482 13 O -0.520 6.520 14 C 0.487 3.513 15 O -0.542 6.542 16 N -0.574 5.574 17 C 0.048 3.952 18 C -0.119 4.119 19 C -0.108 4.108 20 C 0.040 3.960 21 H -0.010 1.010 22 C -0.536 4.536 23 H 0.061 0.939 24 C 0.013 3.987 25 N -0.913 5.913 26 Si 0.958 3.042 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.266 1.266 30 C 0.123 3.877 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.155 0.845 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.262 0.738 48 H 0.042 0.958 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 3.366 21.284 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 H 0.129 0.871 4 C -0.068 4.068 5 C -0.195 4.195 6 C -0.068 4.068 7 N -0.222 5.222 8 C -0.066 4.066 9 C -0.181 4.181 10 N -0.300 5.300 11 C -0.100 4.100 12 C 0.301 3.699 13 O -0.399 6.399 14 C 0.270 3.730 15 O -0.421 6.421 16 N -0.305 5.305 17 C -0.072 4.072 18 C -0.157 4.157 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.009 0.991 22 C -0.574 4.574 23 H 0.079 0.921 24 C -0.187 4.187 25 N -0.551 5.551 26 Si 0.783 3.217 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.190 1.190 30 C 0.002 3.998 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.171 0.829 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.503 2.822 21.966 22.599 hybrid contribution -0.029 -0.307 -2.096 2.118 sum -4.532 2.515 19.870 20.535 Atomic orbital electron populations 1.22142 0.90929 1.04037 1.03971 1.20268 0.96286 0.96820 0.79766 0.87067 1.20595 0.96316 0.94595 0.95323 1.22594 1.01553 0.95083 1.00270 1.23123 0.93514 1.01338 0.88854 1.67696 1.15024 1.09129 1.30330 1.23181 0.95590 0.89966 0.97889 1.22284 0.99072 1.02639 0.94104 1.47826 1.42002 1.17474 1.22730 1.22864 1.00817 0.80392 1.05916 1.20089 0.80082 0.85507 0.84184 1.90246 1.54387 1.21178 1.74108 1.20364 0.81492 0.85292 0.85846 1.90569 1.54831 1.23898 1.72836 1.48498 1.33179 1.30164 1.18644 1.23315 0.97126 0.84758 1.01985 1.21810 1.01217 0.97990 0.94689 1.21569 0.98974 0.97638 0.96352 1.18969 0.94196 0.91973 0.92745 0.99147 1.21472 1.14422 1.16711 1.04844 0.92085 1.25849 0.94805 0.96938 1.01068 1.70039 1.20477 1.24644 1.39961 0.85559 0.77778 0.78649 0.79701 1.20030 1.21127 1.19032 1.22034 0.99254 0.99195 0.79364 0.90677 0.91582 0.88880 0.82910 0.80964 0.80439 0.82663 0.87856 0.88169 0.91690 0.82870 0.91391 0.93438 0.88480 0.92826 0.92553 0.92908 0.93948 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.00 71.98 0.65 -1.45 16 2 C 0.17 3.18 2.95 44.25 0.13 3.31 16 3 H 0.11 2.20 6.81 -2.39 -0.02 2.18 16 4 C -0.06 -1.05 4.97 -19.67 -0.10 -1.15 16 5 C -0.18 -3.02 8.85 22.36 0.20 -2.82 16 6 C 0.09 1.57 11.18 84.68 0.95 2.51 16 7 N -0.51 -10.43 10.36 -195.85 -2.03 -12.46 16 8 C 0.09 1.50 11.18 84.68 0.95 2.45 16 9 C -0.16 -2.55 9.77 22.36 0.22 -2.33 16 10 N -0.57 -14.10 2.73 -828.38 -2.26 -16.36 16 11 C 0.04 0.93 7.54 127.77 0.96 1.89 16 12 C 0.52 16.63 7.63 87.27 0.67 17.29 16 13 O -0.52 -16.76 12.45 -3.25 -0.04 -16.80 16 14 C 0.49 19.51 7.64 87.27 0.67 20.18 16 15 O -0.54 -23.99 12.53 -3.23 -0.04 -24.03 16 16 N -0.57 -23.96 2.97 -819.63 -2.43 -26.39 16 17 C 0.05 1.66 6.27 86.36 0.54 2.21 16 18 C -0.12 -4.03 6.08 30.67 0.19 -3.84 16 19 C -0.11 -4.36 5.10 30.62 0.16 -4.20 16 20 C 0.04 2.05 2.26 -11.32 -0.03 2.02 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 C -0.54 -29.31 8.56 25.60 0.22 -29.09 16 23 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 24 C 0.01 0.73 5.30 84.66 0.45 1.17 16 25 N -0.91 -53.57 11.41 21.45 0.24 -53.33 16 26 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 30 C 0.12 6.09 5.41 86.51 0.47 6.56 16 31 H 0.07 0.90 6.42 -2.39 -0.02 0.89 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.15 2.24 4.42 -2.91 -0.01 2.22 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.78 8.05 -2.91 -0.02 1.76 16 38 H 0.10 1.60 5.44 -2.38 -0.01 1.58 16 39 H 0.10 3.04 4.93 -18.25 -0.09 2.95 16 40 H 0.06 1.42 7.00 -2.39 -0.02 1.40 16 41 H 0.16 5.04 3.76 -80.04 -0.30 4.74 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.09 4.97 5.19 -2.39 -0.01 4.96 16 Total: -1.00 -68.97 380.48 3.36 -65.61 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.60 Total: 23.52 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 7.28 Total: 14.70 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -6.48 Total: -108.54 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.08 Total: -40.83 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.97 3.36 -65.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118503366.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.862 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds