Wall clock time and date at job start Wed Apr 1 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.50691 * 109.46979 * 239.99942 * 2 1 3 5 5 C 1.38651 * 120.79140 * 295.91959 * 4 2 1 6 6 C 1.38204 * 119.16248 * 179.75785 * 5 4 2 7 7 N 1.31872 * 120.76337 * 0.53237 * 6 5 4 8 8 C 1.31869 * 121.72571 * 359.74160 * 7 6 5 9 9 C 1.38207 * 120.76457 * 359.97438 * 8 7 6 10 10 N 1.46502 * 109.46986 * 119.99630 * 2 1 3 11 11 C 1.46506 * 119.99581 * 57.51325 * 10 2 1 12 12 C 1.34768 * 120.00180 * 237.51071 * 10 2 1 13 13 O 1.21351 * 120.00061 * 4.72437 * 12 10 2 14 14 C 1.49451 * 120.00323 * 184.72595 * 12 10 2 15 15 O 1.21345 * 120.00326 * 85.08286 * 14 12 10 16 16 N 1.34777 * 119.99616 * 265.09452 * 14 12 10 17 17 C 1.46920 * 120.63405 * 4.79742 * 16 14 12 18 18 C 1.53192 * 108.77500 * 126.37357 * 17 16 14 19 19 C 1.53036 * 109.31226 * 54.63953 * 18 17 16 20 20 C 1.53044 * 109.53626 * 298.62946 * 19 18 17 21 21 H 1.08998 * 109.49992 * 301.42093 * 20 19 18 22 22 C 1.50695 * 109.50025 * 181.35066 * 20 19 18 23 23 H 1.08007 * 119.99939 * 0.02562 * 22 20 19 24 24 C 1.37874 * 120.00449 * 180.02562 * 22 20 19 25 25 N 1.31515 * 120.00195 * 180.02562 * 24 22 20 26 26 Si 1.86801 * 119.99717 * 0.02562 * 24 22 20 27 27 H 1.48502 * 109.46903 * 89.99953 * 26 24 22 28 28 H 1.48499 * 109.47048 * 209.99587 * 26 24 22 29 29 H 1.48498 * 109.47087 * 330.00309 * 26 24 22 30 30 C 1.46927 * 120.62889 * 184.52562 * 16 14 12 31 31 H 1.09001 * 109.46817 * 59.99920 * 1 2 3 32 32 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47023 * 300.00208 * 1 2 3 34 34 H 1.07997 * 120.41980 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.61786 * 180.25365 * 6 5 4 36 36 H 1.08000 * 119.61327 * 179.97438 * 8 7 6 37 37 H 1.07991 * 120.41729 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.46646 * 206.58871 * 11 10 2 39 39 H 1.09000 * 109.46983 * 86.59361 * 11 10 2 40 40 H 1.08990 * 109.47321 * 326.58902 * 11 10 2 41 41 H 1.09009 * 109.58785 * 246.16026 * 17 16 14 42 42 H 1.09003 * 109.58837 * 6.58640 * 17 16 14 43 43 H 1.09009 * 109.49567 * 174.58772 * 18 17 16 44 44 H 1.08998 * 109.49467 * 294.68175 * 18 17 16 45 45 H 1.08994 * 109.46744 * 58.65279 * 19 18 17 46 46 H 1.09000 * 109.46194 * 178.61615 * 19 18 17 47 47 H 0.97004 * 119.99955 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.58507 * 353.41352 * 30 16 14 49 49 H 1.08994 * 109.59329 * 113.83929 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7780 -2.0595 -1.4246 6 6 2.2503 -2.6761 -2.5677 7 7 2.9439 -1.9990 -3.4619 8 6 3.2093 -0.7165 -3.3075 9 6 2.7647 -0.0318 -2.1924 10 7 2.0183 -0.6905 1.1962 11 6 1.6199 -2.0763 1.4559 12 6 2.8340 -0.0511 2.0577 13 8 3.0953 1.1218 1.8889 14 6 3.4168 -0.7866 3.2209 15 8 4.4375 -1.4282 3.0834 16 7 2.8085 -0.7372 4.4226 17 6 1.5182 -0.0528 4.5810 18 6 0.5229 -1.0205 5.2288 19 6 1.1147 -1.5562 6.5345 20 6 2.4065 -2.3204 6.2355 21 1 2.1943 -3.1384 5.5471 22 6 2.9708 -2.8756 7.5177 23 1 2.4593 -2.7014 8.4529 24 6 4.1401 -3.6058 7.4972 25 7 4.6323 -4.0908 8.6162 26 14 5.0252 -3.9064 5.8798 27 1 5.9972 -2.8104 5.6364 28 1 5.7467 -5.2027 5.9439 29 1 4.0353 -3.9449 4.7736 30 6 3.4204 -1.3721 5.5979 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.2143 -2.6204 -0.6939 35 1 2.0530 -3.7257 -2.7284 36 1 3.7808 -0.1954 -4.0613 37 1 2.9849 1.0185 -2.0719 38 1 1.6533 -2.2689 2.5283 39 1 2.3039 -2.7530 0.9438 40 1 0.6064 -2.2378 1.0891 41 1 1.6446 0.8224 5.2184 42 1 1.1454 0.2550 3.6040 43 1 -0.4093 -0.4964 5.4398 44 1 0.3284 -1.8508 4.5498 45 1 1.3319 -0.7234 7.2034 46 1 0.3983 -2.2261 7.0100 47 1 5.4552 -4.6043 8.6017 48 1 4.3024 -1.9346 5.2917 49 1 3.7050 -0.6068 6.3200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118503369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:54 Heat of formation + Delta-G solvation = -17.564363 kcal Electronic energy + Delta-G solvation = -31688.820886 eV Core-core repulsion = 27616.523936 eV Total energy + Delta-G solvation = -4072.296949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25458 -40.37396 -38.90832 -37.19471 -36.75630 -33.66879 -33.32929 -32.11808 -31.56652 -30.77657 -30.50770 -27.56748 -26.44135 -25.34868 -24.66960 -23.71737 -23.17202 -22.19454 -21.03951 -19.60769 -18.92663 -17.81345 -17.43938 -16.98912 -16.84021 -16.56732 -16.25651 -15.87236 -15.28670 -14.99909 -14.54802 -14.38078 -14.22886 -14.12751 -14.03923 -13.81839 -13.79364 -13.26239 -13.20746 -13.00871 -12.86318 -12.68294 -12.60065 -12.46274 -12.30869 -11.91997 -11.60407 -11.48794 -11.30888 -11.16890 -10.73363 -10.53202 -10.21936 -10.06556 -9.87410 -9.86878 -9.57703 -9.46838 -9.30728 -9.16505 -9.12662 -8.70478 -8.33307 -6.18404 -4.20804 0.81605 0.82864 2.05502 2.16466 2.66488 3.28267 3.30871 3.40301 3.47891 3.52748 4.02251 4.15758 4.19508 4.33755 4.39600 4.64315 4.69040 4.74070 4.84413 4.84971 4.93974 5.12588 5.14313 5.15814 5.16089 5.29591 5.33692 5.36746 5.42027 5.48536 5.60321 5.65761 5.71144 5.83443 5.88944 5.95098 5.99975 6.06115 6.24276 6.35985 6.36922 6.46460 6.58462 6.62255 6.78863 7.01526 7.28162 7.47292 7.60446 7.61415 7.65433 8.04612 8.39657 8.84846 9.42373 10.93441 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003341 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.438788 B = 8378.855516 C = 9170.521588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.115 0.885 4 C -0.052 4.052 5 C -0.165 4.165 6 C 0.099 3.901 7 N -0.485 5.485 8 C 0.099 3.901 9 C -0.158 4.158 10 N -0.596 5.596 11 C 0.063 3.937 12 C 0.524 3.476 13 O -0.513 6.513 14 C 0.507 3.493 15 O -0.515 6.515 16 N -0.588 5.588 17 C 0.107 3.893 18 C -0.134 4.134 19 C -0.102 4.102 20 C 0.007 3.993 21 H 0.031 0.969 22 C -0.517 4.517 23 H 0.079 0.921 24 C 0.074 3.926 25 N -0.893 5.893 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.294 1.294 29 H -0.263 1.263 30 C 0.099 3.901 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.266 0.734 48 H 0.081 0.919 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 7.698 -19.988 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.133 0.867 4 C -0.062 4.062 5 C -0.185 4.185 6 C -0.058 4.058 7 N -0.194 5.194 8 C -0.058 4.058 9 C -0.179 4.179 10 N -0.331 5.331 11 C -0.079 4.079 12 C 0.307 3.693 13 O -0.387 6.387 14 C 0.288 3.712 15 O -0.391 6.391 16 N -0.322 5.322 17 C -0.016 4.016 18 C -0.172 4.172 19 C -0.139 4.139 20 C -0.013 4.013 21 H 0.049 0.951 22 C -0.555 4.555 23 H 0.097 0.903 24 C -0.129 4.129 25 N -0.530 5.530 26 Si 0.706 3.294 27 H -0.200 1.200 28 H -0.221 1.221 29 H -0.188 1.188 30 C -0.020 4.020 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.155 0.845 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.083 7.454 -20.767 24.691 hybrid contribution 0.456 0.169 -0.052 0.489 sum -10.627 7.623 -20.819 24.586 Atomic orbital electron populations 1.22142 0.92836 1.03143 1.03375 1.20044 0.94944 0.97350 0.80645 0.86672 1.20515 0.95726 0.94491 0.95425 1.22264 1.01902 0.95000 0.99369 1.22791 0.93160 1.00159 0.89659 1.67679 1.12524 1.08746 1.30457 1.22776 0.96492 0.90298 0.96190 1.22092 0.98685 1.01805 0.95275 1.47909 1.47601 1.14704 1.22849 1.22149 1.01095 0.81382 1.03323 1.20618 0.77778 0.87006 0.83880 1.90760 1.58494 1.14778 1.74716 1.20065 0.85661 0.81514 0.83943 1.90820 1.24287 1.40516 1.83429 1.48539 1.21428 1.53410 1.08788 1.21793 0.83098 0.95755 1.00913 1.21994 0.97396 0.98698 0.99129 1.21462 0.97975 0.99793 0.94704 1.19411 0.91621 0.93214 0.97034 0.95054 1.20919 1.08761 1.32956 0.92904 0.90273 1.25046 0.96982 0.94810 0.96052 1.69880 1.21258 1.35485 1.26350 0.87032 0.80757 0.77398 0.84185 1.19955 1.22083 1.18796 1.22756 0.98575 0.96976 0.83730 0.90740 0.91604 0.91020 0.84307 0.82595 0.82596 0.84539 0.90023 0.91448 0.89773 0.90630 0.91204 0.91166 0.91926 0.92242 0.91847 0.92381 0.90156 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 8.97 37.16 0.33 -0.69 16 2 C 0.17 1.63 2.98 -69.08 -0.21 1.43 16 3 H 0.12 1.20 6.71 -51.93 -0.35 0.85 16 4 C -0.05 -0.50 4.98 -104.32 -0.52 -1.02 16 5 C -0.17 -1.46 8.07 -39.44 -0.32 -1.77 16 6 C 0.10 0.93 11.18 -17.55 -0.20 0.73 16 7 N -0.48 -5.28 10.36 -13.25 -0.14 -5.42 16 8 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 9 C -0.16 -1.45 9.76 -39.44 -0.39 -1.84 16 10 N -0.60 -7.10 2.75 -175.77 -0.48 -7.58 16 11 C 0.06 0.65 8.17 59.85 0.49 1.13 16 12 C 0.52 8.36 5.47 -11.59 -0.06 8.30 16 13 O -0.51 -9.07 16.44 5.50 0.09 -8.98 16 14 C 0.51 9.65 5.64 -11.58 -0.07 9.59 16 15 O -0.52 -11.81 16.51 5.50 0.09 -11.72 16 16 N -0.59 -10.63 2.97 -173.54 -0.52 -11.14 16 17 C 0.11 1.47 6.33 -3.71 -0.02 1.45 16 18 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 19 C -0.10 -1.74 5.11 -26.69 -0.14 -1.87 16 20 C 0.01 0.15 1.83 -91.87 -0.17 -0.02 16 21 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 22 C -0.52 -13.69 9.15 -34.44 -0.32 -14.01 16 23 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 24 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 25 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 26 Si 0.88 22.45 24.32 -169.99 -4.13 18.32 16 27 H -0.27 -7.15 6.93 56.52 0.39 -6.76 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 30 C 0.10 2.13 5.10 -3.93 -0.02 2.11 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.37 6.20 -51.93 -0.32 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.14 0.96 5.11 -52.49 -0.27 0.69 16 35 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.14 1.02 8.01 -52.49 -0.42 0.60 16 38 H 0.08 0.99 6.84 -51.93 -0.36 0.63 16 39 H 0.07 0.72 7.05 -51.93 -0.37 0.35 16 40 H 0.08 0.56 5.52 -51.93 -0.29 0.27 16 41 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 42 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 43 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.08 1.96 2.30 -51.93 -0.12 1.84 16 49 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -34.69 382.16 -7.62 -42.31 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.02 Total: -0.01 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.05 Total: 4.35 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.36 Total: -50.02 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.18 Total: -20.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.13 Total: 18.32 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.69 -7.62 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118503369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -34.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds